├── .gitignore ├── LICENSE ├── README.md ├── __init__.py ├── affine_utils.py ├── environment.yml ├── graphical_abstract.jpg ├── preprocessing ├── depth_propagation.py ├── preprocess_images_for_projection.py └── preprocess_images_for_training.py ├── train ├── cfg.yaml ├── config.py ├── dataset.py ├── evaluator.py ├── hdf5_decoder.py ├── metrics.py ├── projector_2D.py ├── trainer.py ├── unet.py └── visualization.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /affine_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/affine_utils.py -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/environment.yml -------------------------------------------------------------------------------- /graphical_abstract.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/graphical_abstract.jpg -------------------------------------------------------------------------------- /preprocessing/depth_propagation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/preprocessing/depth_propagation.py -------------------------------------------------------------------------------- /preprocessing/preprocess_images_for_projection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/preprocessing/preprocess_images_for_projection.py -------------------------------------------------------------------------------- /preprocessing/preprocess_images_for_training.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/preprocessing/preprocess_images_for_training.py -------------------------------------------------------------------------------- /train/cfg.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/cfg.yaml -------------------------------------------------------------------------------- /train/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/config.py -------------------------------------------------------------------------------- /train/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/dataset.py -------------------------------------------------------------------------------- /train/evaluator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/evaluator.py -------------------------------------------------------------------------------- /train/hdf5_decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/hdf5_decoder.py -------------------------------------------------------------------------------- /train/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/metrics.py -------------------------------------------------------------------------------- /train/projector_2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/projector_2D.py -------------------------------------------------------------------------------- /train/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/trainer.py -------------------------------------------------------------------------------- /train/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/unet.py -------------------------------------------------------------------------------- /train/visualization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/train/visualization.py -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alinafdima/3Dseg-mip-depth/HEAD/utils.py --------------------------------------------------------------------------------