├── Cargo.lock ├── Cargo.toml ├── Example_data └── test_data.fastq ├── LICENSE ├── README.md ├── isONclust_rs.iml └── src ├── Parallelization_side.rs ├── clustering.rs ├── file_actions.rs ├── generate_sorted_fastq_for_cluster.rs ├── gff_handling.rs ├── main.rs ├── seeding_and_filtering_seeds.rs ├── side_functions_corr.rs ├── structs.rs └── write_output.rs /Cargo.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/Cargo.lock -------------------------------------------------------------------------------- /Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/Cargo.toml -------------------------------------------------------------------------------- /Example_data/test_data.fastq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/Example_data/test_data.fastq -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/README.md -------------------------------------------------------------------------------- /isONclust_rs.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/isONclust_rs.iml -------------------------------------------------------------------------------- /src/Parallelization_side.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/Parallelization_side.rs -------------------------------------------------------------------------------- /src/clustering.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/clustering.rs -------------------------------------------------------------------------------- /src/file_actions.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/file_actions.rs -------------------------------------------------------------------------------- /src/generate_sorted_fastq_for_cluster.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/generate_sorted_fastq_for_cluster.rs -------------------------------------------------------------------------------- /src/gff_handling.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/gff_handling.rs -------------------------------------------------------------------------------- /src/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/main.rs -------------------------------------------------------------------------------- /src/seeding_and_filtering_seeds.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/seeding_and_filtering_seeds.rs -------------------------------------------------------------------------------- /src/side_functions_corr.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/side_functions_corr.rs -------------------------------------------------------------------------------- /src/structs.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/structs.rs -------------------------------------------------------------------------------- /src/write_output.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aljpetri/isONclust3/HEAD/src/write_output.rs --------------------------------------------------------------------------------