├── Data ├── archs4_predictions.tsv ├── autorif_predictions.tsv ├── biojupies_genes1.tsv ├── biojupies_genes2.tsv ├── biojupies_genes3.tsv ├── creeds_rapamycin.tsv ├── enrichr_predictions.tsv ├── example_metadata.csv ├── generif_predictions.tsv ├── geneshot_genes.tsv ├── probe2gene.txt.zip └── tagger_predictions.tsv ├── LICENSE ├── Notebooks ├── Analysis from CSV to Clustergrammer Matrix.ipynb ├── Analysis from CSV to GMT.ipynb └── Microarray Analysis Single Study.ipynb ├── README.md └── Scripts └── microarray_analysis.py /Data/archs4_predictions.tsv: -------------------------------------------------------------------------------- 1 | Rank Gene Score Genes contributing most to score:similarity score 2 | 1 FAM214B 0.0977 TFEB:0.398;ULK1:0.3069;LAMP1:0.3003;ATG9A:0.2735;ATG4D:0.2562;GABARAP:0.228;PINK1:0.2113;ZFYVE1:0.1894;WIPI1:0.1883 3 | 2 TOM1 0.09 DRAM1:0.3611;LAMP1:0.3054;ATG7:0.2707;ATG16L2:0.2704;MAP1LC3A:0.2425;GABARAP:0.2365;ULK1:0.2088;ATG4D:0.2083;ATG101:0.1953 4 | 3 OPTN 0.09 GABARAPL1:0.2337;NBR1:0.2229;WIPI1:0.2101;ATG9A:0.1936;LAMP1:0.1776;BNIP3L:0.1708;SQSTM1:0.1704;MAP1LC3A:0.1694;BAG3:0.1576 5 | 4 NDEL1 0.0857 ATG16L1:0.2169;TFEB:0.215;GABARAPL1:0.1654;ULK1:0.1613;WDFY3:0.1576;BNIP3L:0.1463;RB1CC1:0.1239;ZFYVE1:0.1178;ATG7:0.1155 6 | 5 NATD1 0.0846 ULK1:0.2837;TFEB:0.2822;ATG4D:0.2813;ATG9A:0.2479;PINK1:0.221;ATG14:0.1822;WIPI2:0.1714;ZFYVE1:0.1707;GABARAP:0.1575 7 | 6 ELL 0.0837 TFEB:0.5318;ULK1:0.3699;ATG4D:0.276;LAMP1:0.2367;ATG9A:0.1898;WIPI2:0.1828;AMBRA1:0.1762;GABARAP:0.1614;ATG4B:0.1584 8 | 7 ATP6V0D1 0.083 TFEB:0.2822;ATG7:0.2688;ATG16L2:0.236;DRAM1:0.2307;MAP1LC3A:0.2162;ZFYVE1:0.2144;ATG101:0.2087;LAMP1:0.1832;ATG13:0.1741 9 | 8 TECPR2 0.0822 TFEB:0.3701;WDFY3:0.3375;ULK1:0.3249;PINK1:0.3007;ATG9A:0.1751;GABARAPL1:0.1709;BNIP3L:0.1519;NBR1:0.1389;MAP1LC3A:0.1377 10 | 9 MOB2 0.0813 ATG4D:0.2872;ATG16L2:0.2842;ATG9A:0.2644;ULK1:0.2479;MAP1LC3A:0.2429;GABARAP:0.2227;LAMP1:0.2034;ATG4B:0.2005;PINK1:0.1933 11 | 10 WBP2 0.0812 TFEB:0.3447;ULK1:0.3351;ATG9A:0.3339;ATG16L2:0.3282;PINK1:0.3235;GABARAP:0.259;GABARAPL2:0.2521;GABARAPL1:0.2444;ATG13:0.2194 12 | 11 ZER1 0.0812 ULK1:0.4566;ATG9A:0.4198;TFEB:0.3083;ATG4D:0.298;MAP1LC3A:0.2945;ATG16L2:0.2922;GABARAPL1:0.2737;NBR1:0.2283;WIPI2:0.2038 13 | 12 RNF10 0.0811 TFEB:0.2673;ULK1:0.2425;BNIP3L:0.2313;ATG4D:0.2271;PINK1:0.2147;ATG9A:0.1956;ZFYVE1:0.1648;AMBRA1:0.1406;WIPI2:0.1391 14 | 13 NCF2 0.0803 TFEB:0.5766;ATG7:0.2572;ULK1:0.2526;WDFY3:0.2377;GABARAP:0.2172;BNIP3L:0.2004;DRAM1:0.1632;LAMP1:0.163;LAMP2:0.1294 15 | 14 PLEKHO2 0.0795 ATG16L2:0.5158;LAMP1:0.3564;ATG7:0.3147;DRAM1:0.3106;GABARAP:0.2416;ULK1:0.2157;ATG4D:0.1668;ZFYVE1:0.161;WIPI2:0.1213 16 | 15 PILRA 0.0793 TFEB:0.5344;DRAM1:0.3776;ATG7:0.3243;GABARAP:0.2999;ULK1:0.2253;LAMP1:0.2104;ATG4D:0.1623;MAP1LC3A:0.1521;ZFYVE1:0.1352 17 | 16 HCK 0.0791 TFEB:0.6245;GABARAP:0.2872;ULK1:0.2824;ATG7:0.2794;DRAM1:0.215;ATG4D:0.1778;LAMP1:0.1509;WDFY3:0.1462;ZFYVE1:0.1347 18 | 17 SIGLEC9 0.0789 TFEB:0.4971;ATG7:0.3623;DRAM1:0.3179;GABARAP:0.2604;ULK1:0.183;LAMP1:0.1744;WDFY3:0.138;ZFYVE1:0.1282;ATG4D:0.1131 19 | 18 YPEL3 0.0783 TFEB:0.6221;ULK1:0.4065;GABARAP:0.3248;PINK1:0.2788;ATG4D:0.2695;MAP1LC3A:0.1931;WIPI2:0.1707;ATG9A:0.157;ATG4B:0.1467 20 | 19 AQP9 0.0779 TFEB:0.3769;DRAM1:0.323;ATG7:0.3063;WDFY3:0.1949;GABARAP:0.1828;ULK1:0.1673;LAMP2:0.1309;ZFYVE1:0.1286;ATG101:0.1216 21 | 20 UBAP1 0.0776 ATG13:0.2131;ATG101:0.1606;ATG4D:0.1541;ATG16L2:0.153;ULK1:0.1506;GABARAPL1:0.1421;TFEB:0.1412;ATG9A:0.1373;ZFYVE1:0.1222 22 | 21 PPP2R5B 0.0775 MAP1LC3A:0.3743;GABARAPL1:0.3615;ULK1:0.3426;ATG9A:0.3281;WIPI2:0.1805;ATG13:0.1601;ATG4D:0.1571;TFEB:0.1566;LAMP1:0.1511 23 | 22 NLRC4 0.0771 TFEB:0.4775;WDFY3:0.2591;ATG7:0.2511;BNIP3L:0.2438;GABARAP:0.1969;ULK1:0.1968;LAMP2:0.1382;UVRAG:0.1152;LAMP1:0.1105 24 | 23 YPEL2 0.0769 GABARAPL1:0.1833;ATG2B:0.1666;RB1CC1:0.1495;PINK1:0.1433;NBR1:0.1339;GABARAPL2:0.1321;UVRAG:0.1299;ULK1:0.1094;SIRT1:0.1083 25 | 24 SIRPA 0.0768 LAMP1:0.4086;TFEB:0.3983;PINK1:0.2924;ULK1:0.2723;GABARAPL1:0.2695;MAP1LC3A:0.2629;DRAM1:0.248;ATG7:0.2044;WDFY3:0.2001 26 | 25 NR1H2 0.0768 ATG4D:0.2882;ATG16L2:0.2706;ULK1:0.2576;ATG9A:0.2488;GABARAP:0.2222;ATG101:0.2158;LAMP1:0.2073;ATG13:0.1996;MAP1LC3A:0.1913 27 | 26 GLT1D1 0.0767 TFEB:0.5748;ULK1:0.3361;WDFY3:0.2307;GABARAP:0.2247;PINK1:0.191;ATG4D:0.1505;ATG7:0.1376;BNIP3L:0.1344;NBR1:0.1342 28 | 27 PSAP 0.0767 DRAM1:0.3119;TFEB:0.3006;ATG16L2:0.2629;ATG7:0.2169;ULK1:0.1915;SQSTM1:0.1836;LAMP2:0.1833;GABARAP:0.1823;ATG9A:0.1727 29 | 28 RNF149 0.0766 TFEB:0.4136;BNIP3L:0.3044;WDFY3:0.2842;ATG7:0.1599;ULK1:0.1592;GABARAP:0.1567;VMP1:0.1481;LAMP2:0.139;UVRAG:0.1101 30 | 29 ACSL1 0.0765 TFEB:0.3237;WDFY3:0.2661;BNIP3L:0.1907;DRAM1:0.1725;PINK1:0.1632;ATG7:0.1571;NBR1:0.1406;ULK1:0.1405;LAMP2:0.1399 31 | 30 TLR2 0.0763 TFEB:0.4081;ATG7:0.2803;DRAM1:0.2673;WDFY3:0.2522;GABARAP:0.1803;BNIP3L:0.1735;LAMP2:0.1504;ULK1:0.1365;VMP1:0.1334 32 | 31 TOLLIP 0.0761 MAP1LC3A:0.4275;GABARAPL1:0.3383;ATG9A:0.321;ULK1:0.2669;LAMP1:0.2356;GABARAP:0.1954;TFEB:0.1873;ATG13:0.1859;ATG4D:0.1733 33 | 32 NPL 0.0758 TFEB:0.3525;LAMP1:0.2981;ATG7:0.2979;DRAM1:0.2895;GABARAP:0.2111;LAMP2:0.161;WDFY3:0.1342;WIPI1:0.1337;BNIP3L:0.1294 34 | 33 TMEM127 0.0751 TFEB:0.4462;LAMP1:0.4282;ULK1:0.3771;ATG9A:0.2573;PINK1:0.1961;ATG4D:0.1881;ATG7:0.1767;DRAM1:0.1693;WIPI2:0.1658 35 | 34 STK40 0.0748 TFEB:0.5367;ULK1:0.3579;ATG4D:0.2917;ATG9A:0.2308;LAMP1:0.2174;GABARAP:0.2028;PINK1:0.1675;WIPI1:0.1561;WIPI2:0.1547 36 | 35 RILP 0.0747 ATG4D:0.3448;ATG16L2:0.3302;PINK1:0.2424;GABARAP:0.2148;ATG9A:0.2095;LAMP1:0.1812;ULK1:0.1785;MAP1LC3A:0.1561;WIPI1:0.1479 37 | 36 NAPA 0.0744 TFEB:0.3167;GABARAP:0.2876;ATG4D:0.275;ULK1:0.2689;ATG9A:0.2677;LAMP1:0.2435;ATG16L2:0.2429;PINK1:0.2093;ATG13:0.1953 38 | 37 TPRG1L 0.0744 GABARAPL1:0.2936;ATG9A:0.2853;LAMP1:0.2591;ULK1:0.2531;MAP1LC3A:0.2215;TFEB:0.2103;ATG4D:0.2003;NBR1:0.1859;WIPI2:0.181 39 | 38 TLR4 0.0743 WDFY3:0.4035;BNIP3L:0.295;TFEB:0.2949;ATG7:0.2331;LAMP2:0.1937;DRAM1:0.1696;UVRAG:0.1376;VMP1:0.1369;NBR1:0.1316 40 | 39 MARCH8 0.0741 ATG16L2:0.2678;WDFY3:0.2275;TFEB:0.1898;PINK1:0.1337;ATG2B:0.133;NBR1:0.1319;ATG4D:0.12;WIPI2:0.1145;ULK1:0.1059 41 | 40 MOB3C 0.0739 DRAM1:0.288;ATG16L2:0.2604;ATG7:0.2523;LAMP1:0.2242;ATG4D:0.1546;GABARAP:0.1515;WIPI1:0.1499;BECN1:0.133;ZFYVE1:0.131 42 | 41 PLEKHM1 0.0737 TFEB:0.4005;ULK1:0.2643;LAMP1:0.2093;ZFYVE1:0.1658;ATG4D:0.1514;ATG7:0.1406;GABARAP:0.14;ATG9A:0.1319;ATG13:0.1319 43 | 42 ATP6V1B2 0.0734 ATG16L2:0.2707;DRAM1:0.262;TFEB:0.2257;GABARAP:0.1881;WDFY3:0.1648;MAP1LC3A:0.1506;LAMP2:0.1482;GABARAPL1:0.1478;PINK1:0.1338 44 | 43 AP5Z1 0.073 ULK1:0.3726;TFEB:0.3613;ATG16L2:0.357;ATG4D:0.2849;ATG4B:0.2559;ATF4:0.2323;ATG9A:0.2037;WIPI2:0.1922;ZFYVE1:0.185 45 | 44 TLR8 0.0729 TFEB:0.4255;WDFY3:0.3235;BNIP3L:0.283;ATG7:0.2048;ULK1:0.1755;LAMP2:0.1634;GABARAP:0.1477;DRAM1:0.1347;NBR1:0.126 46 | 45 TCP11L2 0.0723 WDFY3:0.3202;ATG16L2:0.2355;ATG2B:0.2081;PIK3C3:0.1597;UVRAG:0.1423;NBR1:0.1411;TFEB:0.1392;RB1CC1:0.1206;LAMP2:0.1204 47 | 46 FAM129A 0.0721 TFEB:0.352;WDFY3:0.3247;BNIP3L:0.2739;ATG7:0.167;NBR1:0.1455;ULK1:0.1312;LAMP2:0.1213;UVRAG:0.1203;VMP1:0.1159 48 | 47 CALCOCO1 0.072 ULK1:0.2576;PINK1:0.2563;NBR1:0.2268;TFEB:0.2211;ATG9A:0.2162;GABARAPL1:0.216;MAP1LC3A:0.1698;ATG2B:0.1593;LAMP1:0.1527 49 | 48 LILRB3 0.0719 TFEB:0.6191;ULK1:0.3293;GABARAP:0.2751;ATG4D:0.1922;ATG7:0.1837;WDFY3:0.1471;PINK1:0.1307;ZFYVE1:0.1208;DRAM1:0.1175 50 | 49 ABTB1 0.0719 TFEB:0.659;ULK1:0.4101;GABARAP:0.2922;ATG4D:0.2577;PINK1:0.1981;WIPI2:0.1611;ATG4B:0.1546;ATG9A:0.1491;ATG13:0.1384 51 | 50 ADIPOR1 0.0718 ATG16L2:0.3227;TFEB:0.2465;GABARAPL2:0.164;WIPI1:0.1587;PINK1:0.1266;WDFY3:0.1252;BECN1:0.1203;ATG4D:0.1188;ATG7:0.1183 52 | 51 PINK1 0.0717 ATG9A:0.3383;MAP1LC3A:0.302;ULK1:0.2389;WDFY3:0.1862;NBR1:0.1784;BAG3:0.1621;ATG4D:0.1594;TFEB:0.1587;LAMP1:0.1572 53 | 52 CHST15 0.0716 TFEB:0.4426;WDFY3:0.3017;ULK1:0.2951;ATG7:0.1629;BNIP3L:0.1592;NBR1:0.1411;PINK1:0.1391;VMP1:0.1373;GABARAP:0.1297 54 | 53 NCOA4 0.0715 ATG16L2:0.2394;GABARAPL2:0.1879;BECN1:0.1668;WIPI1:0.163;ATG7:0.1611;WDFY3:0.1503;TFEB:0.1422;NBR1:0.1411;PIK3C3:0.1364 55 | 54 DYSF 0.0714 TFEB:0.4689;ULK1:0.3108;WDFY3:0.2467;PINK1:0.2294;GABARAP:0.1565;ATG9A:0.1485;ATG4D:0.1458;ZFYVE1:0.1373;LAMP1:0.1234 56 | 55 MAP3K3 0.0714 TFEB:0.4972;ULK1:0.3694;ATG4D:0.2009;WIPI2:0.1929;LAMP1:0.1769;ATG9A:0.1577;ATG4B:0.1486;WDFY3:0.1469;GABARAP:0.1458 57 | 56 SIGLEC5 0.0714 TFEB:0.5856;ULK1:0.3113;GABARAP:0.2723;ATG7:0.1854;ATG4D:0.1774;WDFY3:0.1672;PINK1:0.1273;ZFYVE1:0.1139;WIPI2:0.1117 58 | 57 PNRC1 0.0711 TFEB:0.2838;DRAM1:0.1671;UVRAG:0.1491;GABARAP:0.1435;WDFY3:0.1299;BNIP3L:0.1266;GABARAPL1:0.124;ATG7:0.118;ULK1:0.1046 59 | 58 DMTN 0.0711 ATG16L2:0.3431;TFEB:0.3034;ULK1:0.2838;ATG9A:0.2634;GABARAPL1:0.2154;MAP1LC3A:0.2044;ATG4D:0.1995;BNIP3L:0.1906;GABARAPL2:0.1527 60 | 59 ADGRE1 0.071 TFEB:0.4167;GABARAP:0.2112;ATG7:0.2014;DRAM1:0.194;BNIP3L:0.1685;ULK1:0.1581;ATG4D:0.1318;WDFY3:0.1145;BECN1:0.1057 61 | 60 LRP10 0.071 TFEB:0.4919;ULK1:0.4219;LAMP1:0.362;ATG9A:0.2955;ATG4D:0.2528;PINK1:0.2134;NBR1:0.1982;GABARAP:0.1963;WIPI2:0.1781 62 | 61 PQLC1 0.0709 LAMP1:0.3163;PINK1:0.3087;ATG4D:0.2992;MAP1LC3A:0.2957;ULK1:0.2944;ATG9A:0.2768;ATG16L2:0.2658;WIPI2:0.2131;ATG4B:0.1877 63 | 62 PLEKHM2 0.0709 PINK1:0.4061;ULK1:0.386;ATG9A:0.3776;TFEB:0.2953;MAP1LC3A:0.2922;GABARAPL1:0.2754;ATG4D:0.2461;AMBRA1:0.2154;DRAM1:0.2122 64 | 63 OSCAR 0.0709 TFEB:0.5807;GABARAP:0.304;ULK1:0.2855;LAMP1:0.2554;ATG7:0.2289;DRAM1:0.2147;ATG4D:0.2047;MAP1LC3A:0.1707;ATG4B:0.1264 65 | 64 HCAR2 0.0708 TFEB:0.4278;ULK1:0.2333;DRAM1:0.2296;GABARAP:0.2093;ATG7:0.2019;WDFY3:0.131;ATG4D:0.1293;ZFYVE1:0.117;MAP1LC3A:0.1008 66 | 65 KLHL21 0.0706 PINK1:0.2157;ULK1:0.2054;TFEB:0.2014;SQSTM1:0.1928;ATG13:0.1923;ATG16L2:0.1887;BAG3:0.1872;ATG4D:0.1828;LAMP1:0.1611 67 | 66 ATG2A 0.0706 ATG16L2:0.4005;TFEB:0.3593;ATG9A:0.2872;ATG4D:0.2591;WIPI2:0.2432;AMBRA1:0.1744;ATG4B:0.1617;PINK1:0.1552;ATG13:0.1335 68 | 67 C19ORF38 0.0705 TFEB:0.61;ULK1:0.3074;GABARAP:0.3009;ATG7:0.2168;ATG4D:0.2086;WIPI2:0.1155;ATG4B:0.1105;PINK1:0.1041;DRAM1:0.1007 69 | 68 MXD1 0.0705 TFEB:0.3876;WDFY3:0.3195;BNIP3L:0.2678;ULK1:0.213;ATG7:0.1583;VMP1:0.137;LAMP2:0.1337;GABARAP:0.1245;NBR1:0.103 70 | 69 DEDD2 0.0705 TFEB:0.4442;ATG4D:0.2699;ULK1:0.2682;GABARAP:0.2663;ATG13:0.1818;ATG4B:0.1522;ATG7:0.1363;ZFYVE1:0.1323;WIPI2:0.1311 71 | 70 ADGRE3 0.0703 TFEB:0.5323;ULK1:0.309;WDFY3:0.2557;GABARAP:0.2058;BNIP3L:0.1674;ATG7:0.1416;PINK1:0.1344;ATG4D:0.1327;VMP1:0.1094 72 | 71 MAP2K3 0.0703 ATG16L2:0.2979;ATG4D:0.2414;ATG9A:0.2131;ULK1:0.1762;DRAM1:0.1696;LAMP1:0.1694;SQSTM1:0.1624;WIPI1:0.1619;GABARAP:0.157 73 | 72 FRAT2 0.0703 TFEB:0.5229;ULK1:0.3272;ATG4D:0.2154;WIPI2:0.1964;GABARAP:0.1853;PINK1:0.1486;WDFY3:0.1449;ZFYVE1:0.1124;ATG13:0.1107 74 | 73 DENND5A 0.0702 ATG16L2:0.3155;DRAM1:0.2322;TFEB:0.2029;ULK1:0.1843;GABARAPL1:0.1788;LAMP1:0.1719;ATG7:0.1712;PINK1:0.1538;AMBRA1:0.1429 75 | 74 HDAC5 0.0701 ATG9A:0.3493;PINK1:0.3266;TFEB:0.3092;MAP1LC3A:0.2949;ATG16L2:0.2877;ATG4D:0.2445;GABARAPL1:0.2388;ATG4B:0.2032;ATG13:0.1941 76 | 75 IL6R 0.07 TFEB:0.4736;ULK1:0.2201;ATG7:0.1978;WDFY3:0.184;GABARAP:0.1726;BNIP3L:0.1551;LAMP2:0.1129;ATG4D:0.1102;NBR1:0.1037 77 | 76 ITGAX 0.0699 TFEB:0.5729;ULK1:0.2843;GABARAP:0.2405;ATG7:0.2201;LAMP1:0.1749;ATG4D:0.1493;WDFY3:0.137;DRAM1:0.1326;ZFYVE1:0.1198 78 | 77 TREM1 0.0699 TFEB:0.3967;ULK1:0.2258;ATG7:0.2149;GABARAP:0.2026;WDFY3:0.195;DRAM1:0.1548;LAMP2:0.1135;GABARAPL1:0.1074;VMP1:0.1029 79 | 78 CLEC4E 0.0698 DRAM1:0.3539;TFEB:0.3337;ATG7:0.3091;GABARAP:0.1915;WDFY3:0.1331;LAMP2:0.119;ULK1:0.112;BNIP3L:0.1072;MAP1LC3A:0.1061 80 | 79 THEMIS2 0.0696 TFEB:0.6516;ULK1:0.296;GABARAP:0.2695;ATG7:0.2023;ATG4D:0.1854;UVRAG:0.1452;BNIP3L:0.1292;WIPI2:0.1238;WDFY3:0.1233 81 | 80 AP5B1 0.0695 TFEB:0.5225;ULK1:0.3615;ATG4D:0.2549;LAMP1:0.2284;ATG7:0.1852;GABARAP:0.1741;AMBRA1:0.1537;WIPI2:0.149;ATG9A:0.1277 82 | 81 PHOSPHO1 0.0693 TFEB:0.5231;ULK1:0.3;GABARAP:0.2349;ATG4D:0.2187;PINK1:0.187;WIPI2:0.1649;ATG9A:0.143;ZFYVE1:0.1131;NBR1:0.1054 83 | 82 HS1BP3 0.0693 TFEB:0.2981;ATG16L2:0.2762;ULK1:0.2453;ATG9A:0.2402;ATG4D:0.2172;GABARAP:0.1817;ATG101:0.1702;SQSTM1:0.1648;ZFYVE1:0.1601 84 | 83 AC018755.18 0.0692 TFEB:0.5286;ULK1:0.3105;GABARAP:0.2353;ATG7:0.2054;ATG4D:0.1579;WDFY3:0.1571;ZFYVE1:0.1223;PINK1:0.1138;DRAM1:0.0983 85 | 84 RNF19B 0.069 TFEB:0.3292;DRAM1:0.3194;LAMP1:0.2276;ZFYVE1:0.1823;ULK1:0.1672;MAP1LC3A:0.1512;ATG7:0.1495;ATG4D:0.1292;GABARAP:0.1104 86 | 85 C5AR1 0.0689 TFEB:0.5191;ULK1:0.2719;GABARAP:0.2566;ATG7:0.2142;LAMP1:0.2032;DRAM1:0.184;ATG4D:0.1305;WDFY3:0.1214;ZFYVE1:0.1061 87 | 86 R3HDM4 0.0688 TFEB:0.5981;ULK1:0.3374;ATG4D:0.29;GABARAP:0.2743;WIPI2:0.1792;PINK1:0.1781;ATG9A:0.1584;ATG13:0.132;BNIP3L:0.1298 88 | 87 SLC31A2 0.0688 ATG7:0.2792;TFEB:0.2489;ATG16L2:0.2448;LAMP2:0.2271;GABARAP:0.1952;LAMP1:0.1564;ATG101:0.1163;GABARAPL2:0.1148;PINK1:0.1038 89 | 88 CNPPD1 0.0688 ATG4D:0.3003;ATG16L2:0.2922;ATG9A:0.2434;ULK1:0.2213;GABARAP:0.2078;ATG13:0.1786;ZFYVE1:0.1472;PINK1:0.1393;WIPI2:0.1352 90 | 89 TNFRSF10C 0.0687 TFEB:0.5718;ULK1:0.318;GABARAP:0.227;WDFY3:0.2256;ATG4D:0.1582;PINK1:0.1582;BNIP3L:0.1521;ATG7:0.138;WIPI2:0.1245 91 | 90 LPIN2 0.0686 ATG2B:0.1996;BNIP3L:0.1866;AMBRA1:0.1772;NBR1:0.163;TFEB:0.1615;ULK1:0.1595;ATG9A:0.1465;ATG14:0.129;WDFY3:0.1233 92 | 91 LITAF 0.0685 TFEB:0.5434;GABARAP:0.25;ULK1:0.2376;DRAM1:0.1861;ATG7:0.1735;ATG4D:0.1466;LAMP1:0.1395;LAMP2:0.1042;BNIP3L:0.1004 93 | 92 FPR2 0.0685 TFEB:0.4778;WDFY3:0.2585;ULK1:0.238;GABARAP:0.2026;BNIP3L:0.19;ATG7:0.1656;LAMP2:0.1272;PINK1:0.1154;VMP1:0.1067 94 | 93 ABHD5 0.0684 BNIP3L:0.1646;WDFY3:0.1543;LAMP2:0.1485;ATG7:0.1401;TFEB:0.1354;NBR1:0.1189;WIPI1:0.1077;GABARAPL2:0.1004;MAP1LC3B:0.0871 95 | 94 FRAT1 0.0684 TFEB:0.5744;ULK1:0.3492;GABARAP:0.2466;ATG4D:0.2227;WIPI2:0.1564;PINK1:0.1474;ATG7:0.1186;WDFY3:0.117;ATG13:0.1038 96 | 95 SEC14L1 0.0684 TFEB:0.3561;ULK1:0.2812;WDFY3:0.2568;PINK1:0.1687;NBR1:0.1521;ATG9A:0.1513;BNIP3L:0.1417;CALCOCO2:0.1369;ZFYVE1:0.1336 97 | 96 WDTC1 0.0681 TFEB:0.5086;ULK1:0.4951;PINK1:0.3916;ATG9A:0.3574;ATG4D:0.3195;LAMP1:0.246;NBR1:0.2316;WIPI2:0.2297;AMBRA1:0.2251 98 | 97 MTMR3 0.0681 AMBRA1:0.2889;WDFY3:0.2278;TFEB:0.2164;ULK1:0.2042;ATG2B:0.1741;PINK1:0.1331;NBR1:0.1175;BNIP3L:0.1156;WIPI2:0.1103 99 | 98 RIOK3 0.0679 GABARAPL2:0.2477;MAP1LC3B:0.1744;WIPI1:0.1566;BECN1:0.1424;NBR1:0.1232;PIK3C3:0.1042;ATG7:0.0967;WDFY3:0.0938;ATG4A:0.0922 100 | 99 ITM2B 0.0679 TFEB:0.3085;GABARAP:0.262;MAP1LC3B:0.1824;LAMP2:0.1737;GABARAPL2:0.173;BNIP3L:0.1658;PINK1:0.1648;GABARAPL1:0.1598;WDFY3:0.1572 101 | 100 TFE3 0.0679 LAMP1:0.4162;ATG16L2:0.3995;TFEB:0.3461;ATG9A:0.3318;PINK1:0.2461;ATG4D:0.223;WIPI2:0.199;GABARAPL1:0.1914;SQSTM1:0.1905 102 | 101 LRRC25 0.0677 TFEB:0.6568;GABARAP:0.3245;ULK1:0.315;ATG7:0.2125;ATG4D:0.1964;WIPI2:0.1287;PINK1:0.1257;ZFYVE1:0.1115;ATG4B:0.1032 103 | 102 CYTH4 0.0677 TFEB:0.6381;GABARAP:0.2738;ULK1:0.2713;ATG7:0.2051;ATG4D:0.2012;ZFYVE1:0.1454;WIPI2:0.1242;UVRAG:0.1236;ATG4B:0.1083 104 | 103 VNN2 0.0676 TFEB:0.4562;WDFY3:0.2802;BNIP3L:0.2433;ULK1:0.2223;GABARAP:0.1613;ATG7:0.1396;LAMP2:0.1386;VMP1:0.1174;PINK1:0.1094 105 | 104 KIAA0513 0.0675 GABARAPL1:0.3896;ATG16L2:0.302;MAP1LC3A:0.2962;WDFY3:0.2814;ULK1:0.2774;TFEB:0.2139;ULK2:0.159;ATG9A:0.1568;ATG2B:0.1486 106 | 105 PTPRJ 0.0675 TFEB:0.3465;WDFY3:0.3178;BNIP3L:0.2913;ATG7:0.1965;ULK1:0.1762;LAMP1:0.1702;NBR1:0.1562;VMP1:0.1149;UVRAG:0.1148 107 | 106 LILRA6 0.0673 TFEB:0.5734;GABARAP:0.2832;ULK1:0.2437;ATG7:0.1964;ATG4D:0.1631;DRAM1:0.1504;WDFY3:0.1173;ZFYVE1:0.1053;LAMP1:0.101 108 | 107 FGR 0.0672 TFEB:0.6341;ULK1:0.3089;GABARAP:0.2546;ATG7:0.2111;ATG4D:0.1676;LAMP1:0.1223;UVRAG:0.1133;WIPI2:0.1115;ZFYVE1:0.1086 109 | 108 SLC45A4 0.0672 TFEB:0.4601;ULK1:0.3952;PINK1:0.2318;WDFY3:0.2255;ATG4D:0.1893;GABARAPL1:0.1539;WIPI2:0.1527;GABARAP:0.152;AMBRA1:0.1429 110 | 109 HLA-E 0.0672 TFEB:0.5572;GABARAP:0.2478;ULK1:0.2279;ATG4D:0.1755;ATG7:0.1587;BECN1:0.1522;ATG4B:0.1335;ATG13:0.1307;UVRAG:0.1086 111 | 110 PTAFR 0.0672 TFEB:0.5599;ATG7:0.2543;GABARAP:0.2493;ULK1:0.2419;DRAM1:0.1916;WDFY3:0.128;ATG4D:0.1216;ZFYVE1:0.1032;LAMP1:0.0987 112 | 111 HCAR3 0.0672 TFEB:0.422;ULK1:0.2269;DRAM1:0.2254;GABARAP:0.2097;ATG7:0.2078;ATG4D:0.126;WDFY3:0.1215;ZFYVE1:0.1112;PINK1:0.0837 113 | 112 STX11 0.0671 TFEB:0.334;DRAM1:0.2639;ATG7:0.2159;GABARAP:0.1612;BECN1:0.1291;WIPI1:0.1283;GABARAPL1:0.1238;ULK1:0.1231;GABARAPL2:0.1077 114 | 113 CEBPB 0.0668 TFEB:0.3709;ATG16L2:0.352;ULK1:0.2924;DRAM1:0.2446;ATG4D:0.2082;SQSTM1:0.1903;GABARAP:0.1754;ATG9A:0.1562;MAP1LC3A:0.1559 115 | 114 MNDA 0.0667 TFEB:0.4355;BNIP3L:0.2894;WDFY3:0.2813;ULK1:0.2102;GABARAP:0.1521;LAMP2:0.1457;ATG7:0.1382;VMP1:0.1179;NBR1:0.1148 116 | 115 CTSS 0.0666 TFEB:0.4207;BNIP3L:0.253;ATG7:0.2438;WDFY3:0.2192;DRAM1:0.1714;GABARAP:0.1662;LAMP1:0.1655;LAMP2:0.142;ULK1:0.139 117 | 116 HPS1 0.0666 ATG16L2:0.3276;GABARAP:0.2852;ATG4D:0.2195;ATG9A:0.1818;ATG13:0.161;ULK1:0.1583;DRAM1:0.1538;LAMP1:0.1504;ATG7:0.1434 118 | 117 RARA 0.0665 TFEB:0.5384;ULK1:0.4668;ATG4D:0.2481;GABARAP:0.2015;WIPI2:0.1677;ATG9A:0.1634;LAMP1:0.1591;ATG4B:0.1488;ATG13:0.1294 119 | 118 GAB2 0.0665 TFEB:0.3444;ULK1:0.3059;WDFY3:0.2666;AMBRA1:0.2065;GABARAPL1:0.1577;UVRAG:0.157;ATG2B:0.1568;PINK1:0.1427;ZFYVE1:0.1259 120 | 119 TBXAS1 0.0663 TFEB:0.4955;GABARAP:0.2884;ATG7:0.2708;DRAM1:0.1824;ULK1:0.166;BNIP3L:0.1515;ATG4D:0.1392;LAMP1:0.1309;WIPI1:0.1216 121 | 120 ARAP1 0.0663 TFEB:0.613;ULK1:0.4171;LAMP1:0.2689;ATG4D:0.2293;ATG7:0.1759;GABARAP:0.1753;ATG9A:0.1678;WIPI2:0.1627;ATG4B:0.1591 122 | 121 CCR1 0.0663 TFEB:0.399;ATG7:0.2921;DRAM1:0.2737;LAMP1:0.2355;GABARAP:0.1938;WDFY3:0.1488;LAMP2:0.1262;ULK1:0.119;ZFYVE1:0.1073 123 | 122 SLC36A1 0.0662 ATG16L2:0.2112;TFEB:0.2029;DRAM1:0.1814;ATG9A:0.18;ULK1:0.1764;ATG7:0.171;ATG4D:0.1585;WDFY3:0.1485;NBR1:0.1452 124 | 123 CPPED1 0.0662 TFEB:0.4966;ULK1:0.2127;GABARAP:0.2076;WDFY3:0.199;BNIP3L:0.1815;ATG7:0.168;LAMP2:0.136;VMP1:0.1051;PINK1:0.102 125 | 124 SLC25A37 0.066 ATG16L2:0.4925;TFEB:0.3296;WDFY3:0.1883;ULK1:0.1688;ATG4D:0.1291;PINK1:0.1235;GABARAP:0.1161;VMP1:0.1122;ATG7:0.1067 126 | 125 DNASE1L1 0.066 TFEB:0.2812;ATG9A:0.2696;ULK1:0.2659;PINK1:0.2534;ATG4D:0.233;ATG16L2:0.2309;WIPI1:0.2062;BAG3:0.1817;DRAM1:0.1456 127 | 126 BCL6 0.0659 TFEB:0.3993;ULK1:0.2288;PINK1:0.1911;WDFY3:0.1811;GABARAP:0.1692;LAMP2:0.1204;ATG7:0.1119;ZFYVE1:0.1085;GABARAPL1:0.1082 128 | 127 GABARAPL1 0.0659 MAP1LC3A:0.2661;WDFY3:0.1912;ULK1:0.1865;ATG9A:0.1794;NBR1:0.1294;ATG13:0.1269;LAMP1:0.1223;MAP1LC3B:0.1193;ATG2B:0.1177 129 | 128 FOXO3 0.0658 WDFY3:0.2661;ATG2B:0.2096;RB1CC1:0.1453;PINK1:0.1281;NBR1:0.1165;ATG9A:0.1094;AMBRA1:0.1089;ATG14:0.1086;ULK1:0.107 130 | 129 SLC11A1 0.0658 TFEB:0.5191;ULK1:0.2637;GABARAP:0.2548;ATG7:0.2315;DRAM1:0.1474;ATG4D:0.1406;WDFY3:0.1134;LAMP1:0.0887;ZFYVE1:0.0867 131 | 130 SIGLEC7 0.0656 TFEB:0.5176;GABARAP:0.2677;ATG7:0.25;LAMP1:0.2437;DRAM1:0.2216;ULK1:0.2057;ATG4D:0.1555;ZFYVE1:0.1043;MAP1LC3A:0.1039 132 | 131 IGSF6 0.0655 TFEB:0.395;ATG7:0.32;DRAM1:0.2736;GABARAP:0.2217;BNIP3L:0.175;WDFY3:0.1736;LAMP2:0.1474;UVRAG:0.1182;LAMP1:0.116 133 | 132 ZNF746 0.0655 TFEB:0.3836;ULK1:0.3258;AMBRA1:0.2121;ATG4D:0.2074;WDFY3:0.1873;WIPI2:0.1716;ATG9A:0.1454;ATG7:0.1337;LAMP1:0.1177 134 | 133 CLEC4D 0.0654 TFEB:0.2524;WDFY3:0.2294;ATG7:0.2009;BNIP3L:0.1947;DRAM1:0.1679;ULK1:0.1513;LAMP2:0.1192;GABARAP:0.1068;ZFYVE1:0.0813 135 | 134 NFAM1 0.0652 TFEB:0.6551;ULK1:0.3667;GABARAP:0.2931;ATG4D:0.209;ATG7:0.1613;PINK1:0.1417;WIPI2:0.1316;ZFYVE1:0.1076;ATG4B:0.1064 136 | 135 IL17RA 0.0651 TFEB:0.5158;ULK1:0.2815;ATG7:0.2369;WDFY3:0.2083;GABARAP:0.1892;LAMP1:0.1431;BNIP3L:0.1408;ATG4D:0.1371;WIPI2:0.1303 137 | 136 RBM38 0.0651 ATG4D:0.3215;ATG16L2:0.3212;ULK1:0.2432;ATG9A:0.2215;WIPI2:0.1991;BNIP3L:0.1806;PINK1:0.1716;AMBRA1:0.1495;UVRAG:0.1197 138 | 137 CEACAM3 0.0651 TFEB:0.6185;ULK1:0.3497;GABARAP:0.2758;ATG4D:0.2093;PINK1:0.153;WDFY3:0.144;ATG7:0.1345;WIPI2:0.1215;ZFYVE1:0.1063 139 | 138 IGF2R 0.065 WDFY3:0.3867;LAMP1:0.3625;TFEB:0.2486;BNIP3L:0.2387;ULK1:0.2319;NBR1:0.2093;MTOR:0.205;AMBRA1:0.1791;ATG2B:0.165 140 | 139 FPR1 0.065 TFEB:0.6218;ULK1:0.3302;GABARAP:0.2881;ATG4D:0.1975;PINK1:0.1508;WDFY3:0.1506;ATG7:0.1488;WIPI2:0.1214;ZFYVE1:0.0967 141 | 140 HCG27 0.0649 TFEB:0.4612;ULK1:0.2378;GABARAP:0.1958;BNIP3L:0.1919;WDFY3:0.1833;PINK1:0.1717;ATG7:0.1293;ATG4D:0.1268;NBR1:0.0856 142 | 141 CDIPT 0.0649 ATG9A:0.3599;LAMP1:0.3129;PINK1:0.2763;ATG4D:0.2757;WIPI2:0.2378;ATG16L2:0.2372;TFEB:0.2236;MAP1LC3A:0.2215;ATG4B:0.1955 143 | 142 HK3 0.0648 TFEB:0.4727;ATG7:0.2509;ULK1:0.2471;GABARAP:0.2221;LAMP1:0.2082;DRAM1:0.1547;ATG4D:0.1462;WDFY3:0.1067;WIPI2:0.0983 144 | 143 ADAM8 0.0647 TFEB:0.6545;ULK1:0.3726;GABARAP:0.2445;ATG4D:0.2416;ATG7:0.1383;ATG4B:0.1366;WIPI2:0.1346;ZFYVE1:0.1125;PINK1:0.1081 145 | 144 SIK3 0.0647 ATG2B:0.2522;ATG16L2:0.2339;TFEB:0.2128;PINK1:0.2088;ULK1:0.2036;GABARAPL1:0.1998;AMBRA1:0.178;ATG7:0.1708;ATG9A:0.1287 146 | 145 ARL8A 0.0647 ULK1:0.3514;MAP1LC3A:0.3296;TFEB:0.2984;PINK1:0.2944;ATG4D:0.2476;ATG16L2:0.2454;GABARAPL1:0.2403;ATG9A:0.2031;WIPI2:0.1822 147 | 146 SPI1 0.0647 TFEB:0.676;ULK1:0.3532;GABARAP:0.3095;ATG4D:0.2453;LAMP1:0.1926;ATG7:0.191;WIPI2:0.1512;ATG4B:0.1334;PINK1:0.1316 148 | 147 ALOX5 0.0646 TFEB:0.6061;ULK1:0.3129;GABARAP:0.2275;ATG4D:0.162;ATG7:0.1585;UVRAG:0.137;WDFY3:0.1296;WIPI2:0.1014;PINK1:0.1005 149 | 148 TMEM140 0.0646 TFEB:0.3275;GABARAPL2:0.2589;WIPI1:0.2367;BECN1:0.2031;GABARAP:0.1858;MAP1LC3B:0.174;BNIP3L:0.1477;ATG7:0.1272;ATG9A:0.1101 150 | 149 PLXNC1 0.0645 WDFY3:0.3766;TFEB:0.3637;BNIP3L:0.3135;ATG7:0.1763;LAMP2:0.1479;ULK1:0.138;ATG2B:0.1353;UVRAG:0.1336;NBR1:0.1215 151 | 150 SIRPB2 0.0645 TFEB:0.5711;ULK1:0.2999;GABARAP:0.2641;ATG7:0.1961;WDFY3:0.1816;ATG4D:0.1336;BNIP3L:0.1313;PINK1:0.121;WIPI2:0.103 152 | 151 GLIPR2 0.0644 TFEB:0.464;GABARAP:0.3056;ATG7:0.2263;ULK1:0.1767;ATG4D:0.1608;DRAM1:0.1394;ZFYVE1:0.1158;WIPI2:0.1158;BECN1:0.1116 153 | 152 CBX7 0.0644 TFEB:0.3924;ATG16L2:0.3719;ULK1:0.3459;GABARAPL1:0.3413;MAP1LC3A:0.2573;ATG9A:0.2133;ATG4D:0.1844;ATG2B:0.1636;ATG13:0.1574 154 | 153 DNAJB2 0.0643 GABARAPL1:0.3599;ULK1:0.3592;MAP1LC3A:0.3494;ATG9A:0.3302;LAMP1:0.2797;TFEB:0.2219;ATG4D:0.198;NBR1:0.1807;WIPI2:0.1638 155 | 154 MYO1F 0.0642 TFEB:0.6529;ULK1:0.3661;GABARAP:0.2643;ATG4D:0.2051;ATG7:0.1659;WIPI2:0.1333;WDFY3:0.1214;PINK1:0.1198;ATG4B:0.1184 156 | 155 P2RY13 0.0642 TFEB:0.5378;ULK1:0.3011;GABARAP:0.2377;WDFY3:0.2256;ATG4D:0.1466;ATG7:0.1442;PINK1:0.1252;BNIP3L:0.1105;VMP1:0.1072 157 | 156 ARRB2 0.0642 TFEB:0.645;ULK1:0.3813;GABARAP:0.2935;ATG4D:0.2529;ATG7:0.1633;WIPI2:0.1579;ATG4B:0.1521;LAMP1:0.1334;PINK1:0.126 158 | 157 FBXO7 0.0641 ATG16L2:0.3483;TFEB:0.262;ATG4D:0.1573;GABARAPL2:0.1315;GABARAP:0.1244;PINK1:0.099;WDFY3:0.0965;WIPI1:0.094;ULK1:0.0906 159 | 158 NADK 0.064 TFEB:0.6337;ULK1:0.4249;ATG4D:0.2629;GABARAP:0.222;WIPI2:0.1868;ATG4B:0.1629;PINK1:0.1607;ATG9A:0.1579;LAMP1:0.1576 160 | 159 N4BP1 0.064 TFEB:0.3496;ULK1:0.2063;WDFY3:0.1974;LAMP1:0.1897;DRAM1:0.1811;AMBRA1:0.1417;ATG7:0.1214;ZFYVE1:0.1175;ATG2B:0.1173 161 | 160 NINJ1 0.0638 ATG7:0.3201;TFEB:0.3028;ATG16L2:0.2654;GABARAP:0.2418;ATG101:0.2113;LAMP1:0.1636;MAP1LC3A:0.1473;ATG4D:0.1299;ZFYVE1:0.1243 162 | 161 DEF8 0.0637 TFEB:0.4549;ULK1:0.3642;PINK1:0.2268;ATG4D:0.2102;ATG4B:0.1891;ATG9A:0.1798;GABARAP:0.1755;MAP1LC3A:0.1491;WIPI2:0.1422 163 | 162 C10ORF54 0.0637 TFEB:0.6428;ULK1:0.3564;GABARAP:0.2999;ATG4D:0.2193;PINK1:0.149;ATG7:0.1417;ZFYVE1:0.138;WIPI2:0.1378;ATG4B:0.1245 164 | 163 SLC43A2 0.0637 ATG16L2:0.3952;LAMP1:0.2305;DRAM1:0.2284;ULK1:0.2214;GABARAP:0.2122;ATG7:0.2057;ATG4D:0.1536;MAP1LC3A:0.133;GABARAPL1:0.119 165 | 164 EHD1 0.0635 ATG16L2:0.331;DRAM1:0.3278;LAMP1:0.3243;ATG4D:0.2309;ULK1:0.2186;MAP1LC3A:0.2011;ATG9A:0.1639;GABARAP:0.1429;ATG7:0.1376 166 | 165 LILRB2 0.0635 TFEB:0.4793;DRAM1:0.2626;ULK1:0.2413;GABARAP:0.2374;ATG7:0.1938;LAMP1:0.1859;ATG4D:0.1539;MAP1LC3A:0.1163;ZFYVE1:0.1025 167 | 166 TYROBP 0.0635 ATG16L2:0.5201;GABARAP:0.3425;DRAM1:0.2719;LAMP1:0.2696;ATG7:0.2598;ULK1:0.1924;ATG4D:0.1806;MAP1LC3A:0.1369;ATG4B:0.1022 168 | 167 OR2W3 0.0633 TFEB:0.2384;BNIP3L:0.2283;ATG4D:0.2233;GABARAPL2:0.2082;ATG9A:0.197;PINK1:0.1565;WIPI1:0.1543;GABARAP:0.1519;ULK1:0.1458 169 | 168 NOD2 0.0633 TFEB:0.5015;ULK1:0.2367;ATG7:0.1866;GABARAP:0.1843;DRAM1:0.1435;WDFY3:0.1289;UVRAG:0.1263;ATG4D:0.1202;BNIP3L:0.1 170 | 169 PADI2 0.0632 TFEB:0.3792;PINK1:0.3689;ULK1:0.2263;WDFY3:0.1885;ATG4D:0.1604;ATG9A:0.1438;NBR1:0.1331;MAP1LC3A:0.1176;GABARAP:0.1128 171 | 170 CFP 0.0632 TFEB:0.6026;GABARAP:0.3131;ULK1:0.3093;ATG7:0.2088;ATG4D:0.1941;ATG4B:0.1104;WIPI2:0.1088;ZFYVE1:0.1068;ATG13:0.1012 172 | 171 SLC15A3 0.0632 LAMP1:0.4422;DRAM1:0.3718;ATG16L2:0.3287;ATG7:0.2708;GABARAP:0.1982;MAP1LC3A:0.1485;ULK1:0.1327;ATG4D:0.1322;ZFYVE1:0.114 173 | 172 NUMB 0.0631 TFEB:0.3197;ATG7:0.2435;DRAM1:0.2314;WDFY3:0.1725;LAMP1:0.1376;ZFYVE1:0.1276;GABARAP:0.1212;LAMP2:0.119;ULK1:0.1173 174 | 173 CD300C 0.0631 TFEB:0.3506;ATG7:0.3485;ATG16L2:0.3409;GABARAP:0.2356;ATG101:0.1728;LAMP1:0.1563;ZFYVE1:0.138;ATG13:0.108;ATG4D:0.1059 175 | 174 ARHGAP26 0.0631 WDFY3:0.4032;TFEB:0.2976;BNIP3L:0.2334;ATG7:0.1712;PIK3C3:0.1587;ATG2B:0.1423;GABARAPL1:0.1403;PINK1:0.137;ULK1:0.1269 176 | 175 KIAA0430 0.063 WDFY3:0.3116;BNIP3L:0.2935;TFEB:0.2918;ULK1:0.24;ATG2B:0.2362;NBR1:0.2135;PINK1:0.1782;GABARAPL1:0.1551;UVRAG:0.1183 177 | 176 ZDHHC18 0.063 TFEB:0.6367;ULK1:0.4035;ATG4D:0.2473;GABARAP:0.2327;WIPI2:0.1736;PINK1:0.1523;ATG4B:0.1375;ATG9A:0.1319;ATG13:0.1131 178 | 177 AOAH 0.0629 TFEB:0.433;ATG7:0.2096;GABARAP:0.2017;BNIP3L:0.1664;ULK1:0.1523;UVRAG:0.1309;WDFY3:0.1276;ATG4B:0.1088;DRAM1:0.0991 179 | 178 NCF1 0.0628 TFEB:0.6771;ULK1:0.3136;GABARAP:0.2756;ATG4D:0.2058;ATG7:0.1569;WIPI2:0.1234;PINK1:0.1179;ATG4B:0.1108;ZFYVE1:0.0996 180 | 179 TMCC2 0.0627 ATG4D:0.2338;ATG14:0.1922;PINK1:0.1656;GABARAPL2:0.1558;GABARAPL1:0.1448;ULK1:0.1331;ZFYVE1:0.1293;WIPI2:0.1221;AMBRA1:0.1198 181 | 180 ADGRG3 0.0627 TFEB:0.5563;ULK1:0.3444;GABARAP:0.2471;ATG4D:0.1946;PINK1:0.1289;WDFY3:0.1246;ATG7:0.1138;ZFYVE1:0.1042;WIPI2:0.1036 182 | 181 PLPPR2 0.0626 ULK1:0.4268;TFEB:0.3381;MAP1LC3A:0.2933;PINK1:0.2854;ATG9A:0.2557;GABARAP:0.2423;ATG4D:0.1801;ATG4B:0.1673;GABARAPL1:0.1671 183 | 182 SSH2 0.0626 TFEB:0.4055;WDFY3:0.3515;BNIP3L:0.2991;UVRAG:0.1743;ATG2B:0.1653;ULK1:0.164;NBR1:0.1507;PIK3C3:0.1467;ATG7:0.1254 184 | 183 PLBD1 0.0626 TFEB:0.3816;ULK1:0.2263;GABARAP:0.1959;ATG7:0.1664;WDFY3:0.165;LAMP2:0.1238;BNIP3L:0.114;ATG4D:0.1023;LAMP1:0.0944 185 | 184 MGAT1 0.0626 TFEB:0.3739;ATG16L2:0.3272;DRAM1:0.2664;ATG7:0.2121;ULK1:0.1987;ATG4D:0.1917;GABARAP:0.1833;ATG9A:0.1781;ATG13:0.1685 186 | 185 CD300LB 0.0626 TFEB:0.5177;ULK1:0.2624;GABARAP:0.25;ATG7:0.209;ATG4D:0.1408;LAMP1:0.1125;WDFY3:0.1083;UVRAG:0.1077;WIPI2:0.0936 187 | 186 MEGF9 0.0624 WDFY3:0.3797;TFEB:0.2852;BNIP3L:0.2021;ULK1:0.2006;LAMP2:0.1727;ATG2B:0.1443;NBR1:0.1406;PINK1:0.1254;VMP1:0.1162 188 | 187 IKBKG 0.0623 TFEB:0.4034;ULK1:0.313;ATG4D:0.2817;ATG9A:0.2578;LAMP1:0.2224;ATG4B:0.1871;GABARAP:0.1779;SQSTM1:0.1726;WIPI1:0.1622 189 | 188 CLEC7A 0.0622 TFEB:0.4078;WDFY3:0.2472;ATG7:0.2113;BNIP3L:0.1842;GABARAP:0.1676;ULK1:0.151;UVRAG:0.1272;LAMP2:0.1268;VMP1:0.1233 190 | 189 PPM1A 0.0622 WDFY3:0.281;ATG2B:0.2729;NBR1:0.2321;CALCOCO2:0.2003;GABARAPL1:0.1969;RB1CC1:0.1567;PIK3C3:0.1348;PINK1:0.1308;GABARAPL2:0.1122 191 | 190 CSF2RB 0.0622 TFEB:0.5403;ULK1:0.2872;GABARAP:0.1958;WDFY3:0.1836;ATG7:0.1441;ATG4D:0.1419;BNIP3L:0.1178;UVRAG:0.1006;ZFYVE1:0.1002 192 | 191 WDR37 0.062 TFEB:0.1762;WDFY3:0.1599;ATG2B:0.1435;ULK1:0.1406;GABARAPL1:0.1389;PINK1:0.1381;NBR1:0.119;ATG7:0.1158;AMBRA1:0.1114 193 | 192 SMPD1 0.062 ATG9A:0.2926;WIPI1:0.2425;PINK1:0.2366;MAP1LC3A:0.2289;GABARAPL1:0.1771;DRAM1:0.1603;ULK1:0.1595;GABARAP:0.153;NBR1:0.1491 194 | 193 NCF1B 0.0619 TFEB:0.6131;ULK1:0.3127;GABARAP:0.2478;ATG4D:0.1974;ATG7:0.14;WIPI2:0.1163;PINK1:0.113;WDFY3:0.1025;ATG4B:0.1002 195 | 194 RNF11 0.0619 GABARAPL2:0.2693;MAP1LC3B:0.2377;WIPI1:0.2089;PINK1:0.196;GABARAPL1:0.1919;RB1CC1:0.1551;ATG9A:0.1472;WDFY3:0.1447;MAP1LC3A:0.1421 196 | 195 UBXN6 0.0618 TFEB:0.3657;ULK1:0.2887;PINK1:0.2843;ATG4D:0.2366;GABARAP:0.2294;ATG9A:0.1887;WIPI2:0.1709;LAMP1:0.1552;MAP1LC3A:0.1501 197 | 196 FOXO4 0.0618 TFEB:0.3007;PINK1:0.2518;ULK1:0.2488;GABARAPL1:0.2133;ATG9A:0.1812;ATG4D:0.1744;WDFY3:0.1286;BNIP3L:0.1251;NBR1:0.1184 198 | 197 SIGLEC14 0.0618 TFEB:0.5031;GABARAP:0.2546;ULK1:0.2462;ATG7:0.2088;DRAM1:0.1475;ATG4D:0.1436;WDFY3:0.0972;ZFYVE1:0.0951;UVRAG:0.0921 199 | 198 SLC6A6 0.0617 TFEB:0.2981;ULK1:0.2639;WDFY3:0.219;LAMP1:0.207;ATG7:0.1274;MAP1LC3B:0.1249;NBR1:0.1227;AMBRA1:0.1182;ATG13:0.1058 200 | 199 OGFRL1 0.0616 ATG16L2:0.2706;BNIP3L:0.2646;LAMP2:0.1911;TFEB:0.1875;ATG2B:0.1593;GABARAPL1:0.1454;ATG7:0.1446;PINK1:0.1413;NBR1:0.1297 201 | 200 ATP6V1E1 0.0616 GABARAPL2:0.2205;PINK1:0.1941;MAP1LC3A:0.1791;GABARAP:0.1692;MAP1LC3B:0.1639;WIPI1:0.1568;LAMP2:0.155;ATG101:0.1407;ATG5:0.1322 -------------------------------------------------------------------------------- /Data/autorif_predictions.tsv: -------------------------------------------------------------------------------- 1 | Rank Gene Score Genes contributing most to score:similarity score 2 | 1 MAP1LC3B 1.7793 WIPI1:5.0151;GABARAPL2:5.0075;WIPI2:4.6148;GABARAPL1:4.6024;CALCOCO2:4.542;WDFY3:4.3001;GABARAP:4.0812;DRAM1:3.9993;ATG4D:3.9535 3 | 2 ULK1 1.7694 ULK2:6.3519;ATG13:6.0346;WIPI1:5.6206;ZFYVE1:5.0377;RB1CC1:4.9648;WIPI2:4.8351;ATG14:4.5308;ATG9A:4.4555;AMBRA1:4.3857 4 | 3 ATG14 1.7555 WIPI1:6.5675;PIK3C3:6.3803;UVRAG:6.324;ATG13:6.1575;STX17:5.9522;ATG4C:5.8795;ULK2:5.5637;ATG9A:5.2873;ATG101:5.1943 5 | 4 WIPI1 1.7467 WIPI2:8.5166;ATG101:7.1252;ATG16L2:6.8889;ATG4C:6.828;ATG2B:6.6077;ATG14:6.5675;ULK2:6.5092;PIK3C3:6.3413;RB1CC1:6.1234 6 | 5 GABARAPL1 1.739 ATG4D:7.0761;GABARAP:6.8917;ATG4C:6.8152;ATG16L2:6.2972;ATG4B:6.0174;ATG4A:6.0174;WIPI1:5.6224;MAP1LC3A:5.3154;CALCOCO2:5.1433 7 | 6 ATG12 1.7199 ATG3:5.6927;ATG16L2:5.3179;ATG5:4.9237;ATG2B:4.731;WIPI2:4.6539;ATG4C:4.5461;ATG16L1:4.4888;ATG4B:4.3749;ATG7:4.3655 8 | 7 GABARAP 1.6717 GABARAPL1:6.8917;ATG4C:5.5481;ATG4B:4.8847;ATG4A:4.7636;ATG3:4.7149;MAP1LC3A:4.6374;WIPI2:4.3785;ATG4D:4.2717;MAP1LC3B:4.0812 9 | 8 ATG5 1.6393 ATG10:4.8202;ATG3:4.2677;ATG7:4.0036;ATG2B:3.9755;ATG4C:3.6389;ATG4D:3.3457;ATG16L1:3.3;WIPI1:3.2736;ATG13:3.2266 10 | 9 ATG3 1.5621 ATG10:6.5576;ATG4D:5.8697;ATG4A:5.8005;ATG12:5.6927;GABARAPL2:5.2509;ATG4B:5.0593;ATG7:5.0257;ATG14:4.9197;DRAM1:4.7773 11 | 10 ULK2 1.5524 ATG13:7.4087;ZFYVE1:7.1281;RB1CC1:6.642;WIPI1:6.5092;ATG4D:6.398;ULK1:6.3519;ATG16L2:6.199;ATG4C:6.1384;ATG14:5.5637 12 | 11 GABARAPL2 1.549 GABARAP:7.2725;ATG4C:7.0812;ATG4D:6.7619;ATG4A:6.2818;ATG4B:5.9964;MAP1LC3A:5.5775;ATG16L2:5.5775;CALCOCO2:5.4045;ATG3:5.2509 13 | 12 ATG13 1.5392 ULK2:7.4087;RB1CC1:7.052;ATG14:6.1575;ULK1:6.0346;ATG4C:5.8406;WIPI1:5.8018;ATG4D:5.1203;GABARAPL1:4.9618;PIK3C3:4.9556 14 | 13 ATG7 1.5366 ATG10:4.9463;ATG12:4.3655;ATG4C:4.2777;ATG5:4.0036;ATG4A:3.8217;ATG16L2:3.7863;ATG4B:3.5251;MAP1LC3A:3.4057;ATG9A:3.1801 15 | 14 SQSTM1 1.5027 NBR1:4.2967;WIPI1:4.0165;MAP1LC3B:3.9306;WDFY3:3.8671;ZFYVE1:3.6672;MAP1LC3A:3.3448;GABARAPL1:2.9813;PIK3C3:2.8564;DRAM1:2.8184 16 | 15 ATG9A 1.4788 ATG4D:7.1084;WIPI2:6.8083;ATG2B:6.6271;ATG16L2:5.9203;ZFYVE1:5.8599;ATG14:5.2873;WIPI1:5.2488;ATG16L1:5.2171;RB1CC1:5.163 17 | 16 BECN1 1.4738 ATG14:4.3457;UVRAG:4.322;AMBRA1:4.0807;ZFYVE1:3.8725;MAP1LC3B:3.6128;WIPI1:3.5017;MAP1LC3A:3.3914;ATG4C:3.3359;ULK2:3.0493 18 | 17 ATG10 1.4482 ATG16L2:7.4697;ATG4C:6.828;ATG12:6.5741;ATG3:6.5576;ATG4A:5.6224;ULK2:5.525;IRGM:5.3906;WIPI2:5.2297;WIPI1:5.2297 19 | 18 ATG4C 1.416 ATG4A:8.8055;ATG16L2:8.5051;ATG2B:8.2222;DRAM1:7.1767;ATG4B:7.0904;GABARAPL2:7.0812;ATG10:6.828;WIPI1:6.828;ATG3:6.817 20 | 19 ATG16L2 1.4082 ATG4C:8.5051;ATG2B:8.2834;ATG10:7.4697;WIPI1:6.8889;AMBRA1:6.517;GABARAPL1:6.2972;DRAM1:6.2472;ULK2:6.199;ATG9A:5.9203 21 | 20 UVRAG 1.4048 AMBRA1:6.0645;PIK3C3:5.8394;ATG4C:5.748;ATG10:4.7365;ATG4A:4.561;STX17:4.5365;ULK2:4.4658;BECN1:4.322;ATG9A:4.1969 22 | 21 RB1CC1 1.3887 ATG13:7.052;ULK2:6.642;WIPI2:6.5332;WIPI1:6.1234;ATG4D:5.4387;ATG16L2:5.2421;ATG9A:5.163;CALCOCO2:5.0702;ATG2B:4.9665 23 | 22 PIK3C3 1.3874 WIPI1:6.3413;ZFYVE1:5.971;ATG101:5.8575;UVRAG:5.8394;WIPI2:5.359;ATG13:4.9556;CALCOCO2:4.8822;RB1CC1:4.7065;ULK2:4.6832 24 | 23 ATG4D 1.3857 ATG4C:9.7045;ATG16L2:8.7675;ATG2B:8.4844;ATG9A:7.1084;GABARAPL1:7.0761;GABARAPL2:6.7619;ATG4B:6.6206;DRAM1:6.4464;ULK2:6.398 25 | 24 ATG16L1 1.331 ATG9A:5.2171;ATG10:5.0858;WIPI2:5.0858;ATG2B:4.5095;ATG12:4.4888;ATG4D:4.4145;ATG16L2:4.223;ATG3:3.9815;ATG4A:3.9559 26 | 25 AMBRA1 1.2962 UVRAG:6.0645;ATG4D:5.7302;ATG4C:5.4726;ULK2:5.1588;ATG14:4.9038;WIPI1:4.8656;ATG13:4.4669;ULK1:4.3857;DRAM1:4.2449 27 | 26 ATG4B 1.2504 ATG4C:7.0904;ATG4D:6.6206;GABARAPL1:6.0174;GABARAPL2:5.9964;MAP1LC3A:5.4379;ATG3:5.0593;GABARAP:4.8847;ULK2:4.5011;ATG12:4.3749 28 | 27 WIPI2 1.1499 WIPI1:8.5166;ATG9A:6.8083;CALCOCO2:6.7136;RB1CC1:6.5332;VMP1:6.2104;MAP1LC3A:5.901;ULK2:5.525;NBR1:5.434;PIK3C3:5.359 29 | 28 NBR1 1.0705 WDFY3:5.6838;WIPI2:5.434;SQSTM1:4.2967;BNIP3L:3.7947;GABARAP:3.6377;ATG9A:3.5487;ATG10:3.5307;VMP1:3.5307;GABARAPL2:3.2327 30 | 29 IRGM 1.0324 ATG4D:5.945;ATG16L2:5.7469;ATG4C:5.6866;ATG10:5.3906;ATG4A:4.5011;ATG2B:4.5011;DRAM1:4.4528;WIPI1:4.1194;AMBRA1:3.7683 31 | 30 DRAM1 1.0176 ATG4D:6.4464;ATG16L2:6.2472;ULK2:4.8941;ATG3:4.7773;IRGM:4.4528;GABARAPL2:4.2883;AMBRA1:4.2449;GABARAPL1:4.0351;MAP1LC3B:3.9993 32 | 31 ATG4A 1.0168 ATG4C:8.8055;ATG4B:7.5433;ATG9A:7.2072;MAP1LC3A:6.2972;GABARAPL2:6.2818;GABARAPL1:6.0174;ATG3:5.8005;ATG10:5.6224;GABARAP:4.7636 33 | 32 ATG2B 0.981 ATG16L2:8.2834;ATG4C:8.2222;ATG10:7.9207;ATG9A:6.6271;WIPI1:6.6077;VMP1:5.6224;RB1CC1:4.9665;ATG12:4.731;ATG14:4.6894 34 | 33 MAP1LC3A 0.9627 WIPI2:5.901;GABARAPL2:5.5775;MAP1LC3B:5.4953;ATG4B:5.4379;GABARAPL1:5.3154;ULK2:5.2185;GABARAP:4.6374;RB1CC1:4.2797;PIK3C3:4.0962 35 | 34 ZFYVE1 0.9395 WIPI1:8.8184;ATG14:7.448;ULK2:7.1281;WDFY3:7.0812;VMP1:6.828;STX17:6.2114;PIK3C3:5.971;ATG9A:5.8599;ULK1:5.0377 36 | 35 BNIP3L 0.9171 GABARAPL1:4.3662;ATG2B:4.3662;WIPI1:3.9864;NBR1:3.7947;GABARAP:3.4677;STX17:3.4114;ATG4B:3.0243;MAP1LC3B:2.8818;GABARAPL2:2.7883 37 | 36 TFEB 0.9049 ATG4D:3.4106;CALCOCO2:3.0722;ULK2:2.8919;ATG9A:2.6505;WIPI1:2.634;MAP1LC3B:2.5913;LAMP2:2.543;MAP1LC3A:2.3754;LAMP1:2.2926 38 | 37 FYCO1 0.8943 WIPI1:6.4624;MAP1LC3A:6.1523;MAP1LC3B:5.2631;GABARAPL2:5.1573;GABARAPL1:4.8973;RB1CC1:4.8246;PIK3C3:4.6378;GABARAP:4.6225;ATG4B:4.4559 39 | 38 LAMP1 0.8761 WIPI1:2.8943;STX17:2.8611;ATG16L2:2.6267;ATG4C:2.5754;ZFYVE1:2.5754;ATG2B:2.3928;TFEB:2.2926;MAP1LC3B:2.0376;UVRAG:2.005 40 | 39 ATG2A 0.874 ATG4D:8.4844;ZFYVE1:8.2222;ATG4A:8.0006;WIPI2:7.6003;ATG9A:6.6271;ATG10:6.6077;VMP1:6.6077;IRGM:6.4525;RB1CC1:5.9433 41 | 40 ATG101 0.8366 RB1CC1:8.2537;ULK2:7.746;WIPI1:7.1252;ULK1:6.425;PIK3C3:5.8575;ATG14:5.1943;GABARAPL2:4.8365;UVRAG:4.1067;ATG3:3.4362 42 | 41 VMP1 0.8286 WIPI2:6.2104;ATG2B:5.6224;WIPI1:5.2297;RB1CC1:4.5792;ATG14:4.3052;ATG9A:4.2863;AMBRA1:3.9142;NBR1:3.5307;PIK3C3:3.4607 43 | 42 BNIP3 0.7719 GABARAPL1:3.8718;ATG4B:2.6648;MAP1LC3B:2.2469;WIPI1:2.0621;ATG12:1.9002;PIK3C3:1.8525;MAP1LC3A:1.8297;GABARAPL2:1.8185;BECN1:1.64 44 | 43 LAMP2 0.7587 STX17:3.6992;ATG4D:3.631;ATG16L2:3.4468;GABARAPL1:2.8281;MAP1LC3B:2.7954;TFEB:2.543;SQSTM1:2.3671;ULK2:2.262;ATG14:2.0579 45 | 44 PIK3R4 0.7238 ATG14:7.6626;WIPI1:7.4542;UVRAG:7.1691;ATG101:6.3874;ATG9A:5.4979;BECN1:4.9511;RB1CC1:4.8246;ATG13:4.5107;ULK1:3.7364 46 | 45 CALCOCO2 0.6707 NBR1:5.933;GABARAPL2:5.4045;GABARAPL1:5.1433;RB1CC1:5.0702;SQSTM1:5.0623;PIK3C3:4.8822;MAP1LC3B:4.542;GABARAP:3.9154;TFEB:3.0722 47 | 46 STX17 0.6686 ATG14:5.9522;UVRAG:4.5365;PIK3C3:3.8069;LAMP2:3.6992;IRGM:3.5401;MAP1LC3B:3.4816;BNIP3L:3.4114;LAMP1:2.8611;ULK1:2.4515 48 | 47 MAP1LC3C 0.6554 MAP1LC3A:8.7675;ATG16L2:8.7675;GABARAPL1:7.4884;GABARAPL2:6.7619;RB1CC1:6.422;ATG4B:6.043;MAP1LC3B:5.8819;GABARAP:5.2338;ATG7:3.0632 49 | 48 MUL1 0.6383 BNIP3L:4.6679;BNIP3:4.269;PIK3C3:4.1261;ATG4B:3.9477;ULK1:3.9217;UVRAG:3.9131;MAP1LC3B:3.7952;PINK1:3.3338;GABARAP:3.1922 50 | 49 PRKAA2 0.6354 ATG101:5.3598;MAP1LC3A:5.1279;ULK2:4.7571;PIK3C3:4.5938;ATG14:4.5047;RB1CC1:3.832;ATG13:3.5307;MAP1LC3B:3.3303;ULK1:2.8014 51 | 50 SH3GLB1 0.6055 UVRAG:6.7953;MAP1LC3A:6.5777;ATG9A:5.9203;IRGM:5.7469;PIK3C3:5.0534;ATG5:3.4546;BECN1:3.0214;ULK1:2.709;LAMP1:2.6267 52 | 51 PINK1 0.5888 CALCOCO2:2.6415;BNIP3L:2.3553;WIPI1:2.2272;AMBRA1:2.1852;ATG16L2:1.9861;STX17:1.7614;NBR1:1.6456;ATG9A:1.5192;BNIP3:1.4228 53 | 52 TP53INP2 0.5814 GABARAPL1:6.2366;PIK3C3:4.9939;GABARAP:4.9784;BNIP3L:4.5786;MAP1LC3B:3.709;ATG12:3.0796;ATG7:2.8343;ULK1:2.6571;BNIP3:2.5598 54 | 53 RPS6KB1 0.5662 WIPI1:4.6638;ATG9A:3.7378;MAP1LC3B:3.5167;SQSTM1:2.5996;ULK1:2.483;LAMP2:2.3517;ATG7:2.3154;TFEB:2.1608;GABARAP:2.1043 55 | 54 BAK1 0.5587 WIPI2:3.2724;BNIP3L:3.008;DRAM1:2.7062;ATG10:2.4145;ATG4B:2.3681;IRGM:2.2884;AMBRA1:2.1173;BAG3:2.086;ATG3:1.7891 56 | 55 RAB7A 0.5299 ATG9A:4.3238;ATG10:4.3052;GABARAPL1:3.7442;ATG14:3.4121;LAMP2:3.3911;ATG4B:3.3246;UVRAG:3.2914;ATG16L1:1.9347;ATG12:1.801 57 | 56 CTSB 0.524 ATG10:2.8224;MAP1LC3A:2.5571;PIK3C3:2.1141;TFEB:2.0111;MAP1LC3B:1.8502;ATG3:1.8412;LAMP2:1.8317;ATG12:1.5898;SQSTM1:1.5329 58 | 57 CTSD 0.5087 DRAM1:2.4476;MAP1LC3B:2.2464;ATG10:2.1673;SQSTM1:2.1531;TFEB:1.9954;LAMP2:1.9793;GABARAPL1:1.7256;PIK3C3:1.543;ATG4B:1.4211 59 | 58 HSP90AA1 0.4939 ATG4C:4.9038;ATG4A:4.6894;ATG10:3.3763;ATG13:2.509;IRGM:2.3809;ATG3:1.8721;MAP1LC3B:1.5911;BAG3:1.4637;SQSTM1:1.3004 60 | 59 ACTB 0.4937 ZFYVE1:2.6759;CALCOCO2:2.5791;WIPI2:2.1688;MAP1LC3B:2.1292;ATG101:2.1101;ULK2:1.6581;PIK3C3:1.5443;SQSTM1:1.125;RB1CC1:1.0679 61 | 60 WDR45 0.4884 ATG4D:6.422;ATG16L2:6.2229;ATG2B:5.9433;GABARAPL1:4.9665;RB1CC1:3.9415;PIK3C3:3.7607;ATG13:3.6383;ULK1:1.6595;ATG7:1.1681 62 | 61 HDAC6 0.4841 ATG16L2:2.1875;ATG4C:2.1398;ZFYVE1:2.1398;DRAM1:1.9334;ATG14:1.0947;ATG10:1.0738;IRGM:0.9936;MAP1LC3B:0.962;GABARAPL2:0.9101 63 | 62 DRAM2 0.4799 ATG10:6.6077;UVRAG:5.5301;IRGM:5.4689;ATG3:4.8262;ATG12:3.7843;ULK1:3.3362;BECN1:3.1372;ATG7:2.6452;SQSTM1:2.5888 64 | 63 EVA1A 0.4772 STX17:7.2016;PIK3C3:5.971;MAP1LC3B:4.6527;ATG16L1:4.1649;ATG12:3.9916;LAMP1:3.449;ATG7:2.8343;BECN1:2.4722;ATG5:2.2688 65 | 64 SNAP29 0.4573 ATG14:4.8845;NBR1:3.5487;UVRAG:3.2735;MAP1LC3B:3.1605;BNIP3L:3.092;ULK1:2.1667;LAMP2:2.0428;SQSTM1:1.5479;PINK1:1.5192 66 | 65 COX4I1 0.4497 WIPI2:6.0644;MAP1LC3B:4.4731;BNIP3L:3.8481;TFEB:3.3784;SQSTM1:2.9729;ULK1:2.0381;BECN1:1.8729;ATG7:1.4827;PINK1:1.4122 67 | 66 FUNDC1 0.4485 BNIP3L:5.9873;BNIP3:4.6459;MAP1LC3B:4.3759;GABARAP:4.1416;ULK1:3.952;PINK1:3.363;ATG5:1.6244;ATG7:1.4181;SQSTM1:1.3763 68 | 67 DNM1L 0.444 BNIP3L:2.4799;AMBRA1:1.9611;PINK1:1.8675;GABARAPL1:1.7992;MAP1LC3B:1.7721;RB1CC1:1.7459;NBR1:1.6645;ATG14:1.5504;IRGM:1.4241 69 | 68 BAG3 0.437 ATG14:2.1751;ATG10:2.1444;ATG3:1.9671;MAP1LC3B:1.6787;RB1CC1:1.6533;SQSTM1:1.6477;NBR1:1.5743;BNIP3L:1.2576;BNIP3:1.1309 70 | 69 OPTN 0.4172 WIPI2:3.0003;ZFYVE1:2.6774;SQSTM1:2.2137;WIPI1:2.1702;NBR1:2.0129;GABARAPL2:1.2587;PINK1:1.1605;RB1CC1:1.0688;PIK3C3:0.9705 71 | 70 FOXO3 0.4074 BNIP3:1.6438;ATG101:1.266;ATG12:1.1854;PIK3C3:1.149;MAP1LC3A:1.1317;ATG13:1.0777;ATG4B:1.0478;SIRT1:1.0232;BNIP3L:0.9284 72 | 71 TOMM20 0.4002 AMBRA1:3.9512;NBR1:3.5669;PINK1:2.9303;MAP1LC3B:2.3293;ULK1:2.1822;SQSTM1:1.9731;TFEB:1.8782;BECN1:1.7112;ATG5:1.1846 73 | 72 TAX1BP1 0.3936 NBR1:5.0112;ATG9A:4.2679;RB1CC1:3.6205;GABARAP:3.4287;SQSTM1:2.7264;PINK1:1.8972;ATG16L1:1.8914;ULK1:1.4322;ATG7:0.9863 74 | 73 ATF6 0.3935 ATG4D:2.3634;ATG10:1.6965;WIPI1:1.6965;ATG3:1.3721;DRAM1:1.2807;ULK2:1.2522;ATG9A:1.0948;UVRAG:1.0353;MAP1LC3B:0.9719 75 | 74 XBP1 0.3809 IRGM:1.6999;ULK2:1.6142;ATG16L1:1.5288;ATG10:1.4176;NBR1:0.9755;PIK3C3:0.9382;ATG9A:0.8853;UVRAG:0.8342;ATG12:0.7345 76 | 75 MTOR 0.3785 ULK1:1.1016;MAP1LC3B:0.8187;TFEB:0.6738;ATG13:0.6347;ULK2:0.5404;ATG4D:0.5404;ATG14:0.5278;BECN1:0.4974;PIK3C3:0.4894 77 | 76 WDFY3 0.3783 NBR1:5.6838;GABARAPL2:5.1573;MAP1LC3B:4.3001;SQSTM1:3.8671;GABARAP:3.6799;ATG12:2.7593;ATG5:1.3094;CASP3:0.0922 78 | 77 RUBCN 0.3697 PIK3C3:7.2206;ATG14:7.1281;MAP1LC3B:5.8819;BECN1:5.0769;SQSTM1:4.8624;MTOR:1.4943 79 | 78 SMCR8 0.3632 ATG101:7.4258;RB1CC1:5.8454;TFEB:4.7383;ULK1:4.7267;SQSTM1:3.3734;LAMP1:3.1597 80 | 79 CYCS 0.3584 AMBRA1:3.9892;NBR1:3.6042;MAP1LC3B:2.362;SQSTM1:2.0035;PINK1:1.9706;ULK1:1.4956;BNIP3:1.4215;ATG7:1.0365;BECN1:0.8317 81 | 80 TBK1 0.3583 ATG9A:2.734;WIPI2:2.2381;GABARAPL2:1.9848;RB1CC1:1.7361;SQSTM1:1.4017;NBR1:1.0528;PIK3C3:1.0136;TFEB:0.6136;ULK1:0.6094 82 | 81 RAB5A 0.3475 ZFYVE1:4.3301;PIK3C3:3.4846;LAMP1:2.2698;ATG14:2.0654;UVRAG:1.9647;MAP1LC3B:1.2201;LAMP2:1.032;BECN1:1.0011;SQSTM1:0.7174 83 | 82 EIF2S1 0.345 IRGM:4.5011;ATF4:4.2219;ATG7:2.6452;SQSTM1:2.5888;LAMP1:2.3928;BECN1:2.2925;PINK1:1.7794;SIRT1:0.6466 84 | 83 ZFYVE26 0.3359 UVRAG:5.6902;PIK3C3:4.9369;MAP1LC3B:4.5962;BECN1:3.575;LAMP1:3.3956;SQSTM1:2.7264 85 | 84 MAPK8 0.3287 ATG4C:2.0944;ZFYVE1:2.0944;ATG4A:1.9273;WDFY3:1.8205;WIPI2:1.6422;BECN1:1.0504;NBR1:0.6899;UVRAG:0.5819;IRGM:0.5614 86 | 85 PTPN2 0.3252 ATG16L1:3.3722;ULK2:2.9952;ATG10:2.7343;GABARAPL1:2.2436;ATG14:1.9656;UVRAG:1.8672;LAMP2:0.9658;ATG12:0.8061;ULK1:0.6164 87 | 86 FIS1 0.3246 GABARAPL1:2.5922;STX17:2.5709;PINK1:2.2159;BNIP3:1.4087;MAP1LC3B:1.3967;ULK1:1.0542;GABARAP:1.0228;LAMP2:0.7152;ATG5:0.6006 88 | 87 RAB24 0.3241 ATG9A:5.4979;GABARAP:3.6799;MAP1LC3B:3.3716;ULK1:2.3531;LAMP1:2.2751;ATG7:1.7543;ATG5:1.3094 89 | 88 DEPTOR 0.32 AMBRA1:3.0593;ATG4B:2.4784;MTOR:2.2362;GABARAP:1.8398;MAP1LC3B:1.6047;ULK1:1.4824;TFEB:1.2369;LAMP1:0.8784;SQSTM1:0.5797 90 | 89 TSC2 0.317 ATG4C:1.6817;WIPI1:1.2823;ULK1:1.0567;DRAM1:0.9364;ULK2:0.9132;TFEB:0.8615;ATG13:0.7792;UVRAG:0.7405;AMBRA1:0.6341 91 | 90 TUFM 0.317 BNIP3L:4.0235;ATG16L1:3.6196;ATG12:3.4513;PINK1:2.7391;ULK1:2.1822;ATG5:1.8262;SQSTM1:1.5611 92 | 91 BNIP1 0.3166 BNIP3:3.5463;BAG3:3.1163;LAMP2:2.9824;ATG7:1.6914;PINK1:1.6155;ATF4:1.4141;BECN1:1.4082;ATG5:1.2563;CASP3:0.3894 93 | 92 TRIM63 0.3023 MAP1LC3A:2.9544;NBR1:1.7766;ATG13:1.6315;BNIP3:1.4981;ULK1:1.1289;ATG12:1.078;BECN1:0.8856;ATG7:0.7532;ATG5:0.513 94 | 93 SESN2 0.3023 DRAM1:3.6344;ULK1:2.3835;BNIP3L:2.2137;ATF4:1.8266;PINK1:0.9277;BNIP3:0.8304;BECN1:0.7849;ATG5:0.6844;MTOR:0.6797 95 | 94 EPG5 0.294 ATG14:4.5485;ATG16L1:2.9177;TFEB:2.8511;ATG7:1.7543;SQSTM1:1.7072;BECN1:1.4651;ATG5:1.3094;CASP3:0.0922 96 | 95 ATF4 0.2895 MAP1LC3B:1.2829;MAP1LC3A:1.1339;DRAM1:0.9615;ATG3:0.8813;ATG13:0.8012;UVRAG:0.7617;ATG12:0.7554;ATG5:0.7045;ATG7:0.6471 97 | 96 EDEM1 0.2859 NBR1:4.0966;GABARAPL1:3.3512;ATF4:2.3118;ATG3:2.3074;ATG7:1.3318;SQSTM1:1.2916;ATG5:1.2735;CASP3:0.1168 98 | 97 TNFRSF10B 0.2839 MAP1LC3A:2.2434;DRAM1:1.9864;ATG3:1.5729;BNIP3L:1.5301;ATG4B:1.0812;IRGM:1.0295;GABARAP:0.7043;ATF4:0.6475;BAG3:0.521 99 | 98 EIF2A 0.2819 ATF4:4.2717;ATG7:2.8343;SQSTM1:2.7765;PINK1:2.7391;ATG5:2.2688;MTOR:1.3303;CASP3:0.4232 100 | 99 NRBF2 0.2778 PIK3C3:7.4258;UVRAG:6.6202;BECN1:4.7111;ULK1:3.4328 101 | 100 FNBP1L 0.2776 ATG4A:6.8606;IRGM:4.3611;ATG3:3.7398;ATG16L1:2.9177;ATG5:1.3094 102 | 101 VAMP7 0.2765 ATG9A:3.1568;LAMP1:3.0992;UVRAG:3.056;LAMP2:1.8613;ATG16L1:1.744;ATG12:1.0244;SQSTM1:0.4915;PINK1:0.479;ATG5:0.339 103 | 102 ZKSCAN3 0.2746 TFEB:6.1948;MAP1LC3B:4.2567;ATG12:3.6065;BECN1:2.1413;ATG5:1.9502 104 | 103 TRIM16 0.2737 ATG16L1:3.5834;TFEB:3.5129;MAP1LC3B:3.1431;ULK1:2.9793;SQSTM1:1.535;BECN1:1.3076 105 | 104 EEA1 0.2732 LAMP2:2.6642;PIK3C3:1.9611;ATG14:1.8925;UVRAG:1.7959;MAP1LC3B:1.0924;SQSTM1:0.631;ULK1:0.5827;ATG16L1:0.4823;TFEB:0.4608 106 | 105 TIGAR 0.2721 BNIP3L:2.252;BNIP3:2.077;MAP1LC3B:1.5779;LAMP2:1.3563;ATG5:1.1735;ATG7:1.0058;ULK1:0.905;BECN1:0.8055;PINK1:0.5525 107 | 106 ULK3 0.2712 ULK1:3.2906;LAMP2:3.1465;ATG12:2.8417;ATG7:1.8227;SQSTM1:1.7746;ATG5:1.3676;MTOR:0.7019 108 | 107 TBC1D5 0.2694 ATG9A:6.3501;GABARAPL2:6.0056;PIK3C3:5.4781;ULK1:3.0863 109 | 108 DAPK1 0.2685 DRAM1:2.4117;ATG9A:2.1484;UVRAG:1.3709;BNIP3L:1.2492;BAG3:1.1821;ATG3:0.971;MAP1LC3B:0.7878;ULK1:0.3997;BNIP3:0.3724 110 | 109 TP53INP1 0.2669 DRAM1:3.6791;GABARAPL2:3.0643;PIK3C3:2.6025;BNIP3L:2.252;GABARAP:1.811;BECN1:0.4582;ATG5:0.3939;SIRT1:0.2832;CASP3:0.2068 111 | 110 ULK4 0.266 ATG16L2:7.7007;GABARAPL1:5.4435;RB1CC1:5.37;ATG7:2.1712 112 | 111 BCL2L13 0.2655 BNIP3L:5.4351;BNIP3:4.2539;PINK1:2.6415;ULK1:2.5606;BECN1:1.632;CASP3:0.2108 113 | 112 DDIT4 0.2634 ATF4:2.0406;ATG4B:1.8596;BNIP3L:1.6891;MTOR:1.6647;ULK1:1.3489;BNIP3:1.2793;SQSTM1:1.0958;ATG12:0.786;ATG7:0.6743 114 | 113 HSPA5 0.2629 MAP1LC3A:2.2834;GABARAPL1:1.3722;PIK3C3:1.2129;MAP1LC3B:1.0226;BNIP3L:0.9838;ATG3:0.75;ATG5:0.7245;ATG12:0.7107;SQSTM1:0.7002 115 | 114 WDR41 0.2621 RB1CC1:6.422;ULK1:4.7267;SQSTM1:3.9112;LAMP1:3.6898 116 | 115 MAPK1 0.2611 WIPI1:2.4626;PIK3C3:1.1613;ATG14:1.1106;MAP1LC3B:0.9766;ATG7:0.7967;ATG12:0.6756;SQSTM1:0.6656;BECN1:0.5416;ULK1:0.5113 117 | 116 KLHL20 0.2599 ATG14:6.2884;ATG13:6.2494;ULK1:4.4745;BECN1:2.8207 118 | 117 DIRAS3 0.2593 PIK3C3:3.0219;ATG14:2.9406;BNIP3L:2.6515;MAP1LC3B:1.9211;TFEB:1.5123;BNIP3:1.0908;BECN1:0.6087;MTOR:0.2323;CASP3:0.0827 119 | 118 CTSL 0.2587 PIK3C3:1.5807;LAMP2:1.5044;ATG4B:1.4571;LAMP1:1.1891;TFEB:1.0257;GABARAP:0.9889;BNIP3:0.9617;MAP1LC3B:0.8312;SQSTM1:0.8116 120 | 119 CTSS 0.2582 PIK3C3:2.3169;IRGM:2.0903;ATG3:1.6135;LAMP2:1.1536;ATG12:0.9722;SQSTM1:0.8116;LAMP1:0.7137;BNIP3:0.7064;ATG7:0.4809 121 | 120 NLRX1 0.2581 UVRAG:2.9378;IRGM:2.8835;ATG16L1:2.4003;ATG12:2.2528;ATG5:1.2912;ATG7:0.8275;SQSTM1:0.7984;SIRT1:0.2224 122 | 121 LMNB1 0.2562 BNIP3L:2.8427;MAP1LC3B:2.0898;LAMP2:1.8317;TFEB:1.6622;LAMP1:1.225;BNIP3:1.2143;SQSTM1:0.8392;ATG5:0.5993;MTOR:0.1403 123 | 122 CPTP 0.2547 ATG9A:6.1918;ULK1:2.9457;ATG7:2.2848;SQSTM1:2.2314;ATG5:1.7707 124 | 123 EIF2AK3 0.2545 MAP1LC3B:3.1961;ATF4:3.0621;ATG12:1.8154;ATG7:1.6195;ATG5:1.5541;SQSTM1:1.3124;BECN1:0.4693;MTOR:0.1737;CASP3:0.1196 125 | 124 TFE3 0.2523 WIPI1:2.5663;ATG9A:1.8054;SQSTM1:0.9225;GABARAP:0.7374;ATG12:0.7239;MAP1LC3B:0.6116;ATG5:0.5032;LAMP2:0.5007;ATG7:0.3426 126 | 125 PIKFYVE 0.2515 NBR1:2.4568;PIK3C3:2.3943;LAMP1:2.3519;TFEB:1.6847;ATG12:1.6117;MAP1LC3B:1.4146;ATG5:0.3373;MTOR:0.1433 127 | 126 PRR5 0.2494 ATG4B:5.0647;UVRAG:5.0288;ATG7:2.2263;ATG5:1.7187;MTOR:1.4943 128 | 127 HTT 0.2483 CALCOCO2:1.5542;ATG14:1.2622;ATG101:1.196;NBR1:1.1244;ATG9A:0.7568;BAG3:0.5945;GABARAPL1:0.5356;SQSTM1:0.5103;ATG13:0.4225 129 | 128 PELI3 0.2474 LAMP2:6.2655;ATG7:4.674;SQSTM1:4.6093;MTOR:2.0104 130 | 129 TMEM74 0.2473 ATG16L1:5.1241;ULK1:4.4745;BECN1:3.3359;ATG5:3.1107 131 | 130 NFE2L2 0.2463 ATG4D:1.4669;ATG16L2:1.3415;ZFYVE1:1.3047;SQSTM1:1.0291;WIPI2:0.9662;GABARAPL1:0.705;RB1CC1:0.3774;NBR1:0.3513;ATG3:0.3453 132 | 131 TP63 0.2439 DRAM1:2.4507;ATG9A:2.1855;ATG10:2.1702;UVRAG:1.4004;ATG3:0.9946;ATG16L1:0.6103;ATG12:0.5494;ULK1:0.4115;ATG7:0.2517 133 | 132 ATF3 0.2435 ATF4:2.3587;CALCOCO2:2.0991;BNIP3L:1.5245;ATG4B:1.0766;RB1CC1:0.7855;BNIP3:0.68;ATG13:0.6572;MAP1LC3B:0.3191;ULK1:0.284 134 | 133 CUL3 0.2433 ATG14:2.5063;PIK3C3:2.1141;ATG13:2.0132;GABARAPL2:1.7724;ULK1:0.8944;GABARAP:0.8664;ATG16L1:0.5427;SQSTM1:0.3957;BECN1:0.3165 135 | 134 SNPH 0.2422 ATG4B:3.4581;BNIP3L:3.2408;ATG3:2.7854;BNIP3:1.4895;SQSTM1:1.0568;BECN1:0.8795 136 | 135 TRIM6 0.2409 BNIP3L:8.1071;ULK1:6.0156;PINK1:5.1318 137 | 136 RPS6KB2 0.2378 SQSTM1:2.8291;LAMP1:2.6267;BNIP3:2.611;ATF4:1.7608;ATG5:1.5814;MTOR:1.5731 138 | 137 FNIP2 0.2374 GABARAP:4.205;MAP1LC3B:3.8878;ULK1:3.715;SQSTM1:2.119;MTOR:0.8995 139 | 138 RAB33B 0.2374 GABARAPL2:5.4045;ATG3:3.976;ATG12:3.8837;ATG5:2.6526 140 | 139 VDAC1 0.2356 AMBRA1:1.6403;NBR1:1.3718;PINK1:1.3351;BNIP3:1.1337;TFEB:0.8345;SQSTM1:0.7771;MAP1LC3B:0.6682;ULK1:0.602;LAMP2:0.5489 141 | 140 BCL2L1 0.2345 ATG4D:0.8628;UVRAG:0.7869;BNIP3L:0.7821;AMBRA1:0.7503;ATG4A:0.6642;BECN1:0.6526;BNIP3:0.5286;ATG10:0.5286;CASP3:0.4286 142 | 141 TM9SF1 0.2339 ATG12:4.3838;ATG7:3.1979;PINK1:3.0991;ATG5:2.607 143 | 142 DDIT3 0.2313 MAP1LC3A:1.8851;MAP1LC3B:1.0549;ATG12:0.9159;ATG9A:0.8865;BECN1:0.4914;ATG4B:0.4878;UVRAG:0.4773;ATG7:0.4486;SQSTM1:0.4309 144 | 143 PIM2 0.2293 DRAM1:2.9812;ULK2:2.9386;ATG4B:1.847;ATG3:1.3406;ATG12:0.7787;BECN1:0.5227;ATG7:0.3722;ATF4:0.2866;MTOR:0.0515 145 | 144 MTPAP 0.2279 ATG14:5.4726;ATG12:3.6065;PINK1:2.3944;ATG5:1.9502 146 | 145 SPG11 0.2268 ATG14:2.5668;UVRAG:2.4565;LAMP1:1.8209;MAP1LC3B:1.6115;SQSTM1:1.3185;PINK1:1.2924;BECN1:0.4721 147 | 146 SNX18 0.2263 ATG9A:6.4366;ATG14:5.4726;ATG16L1:5.2895 148 | 147 KEAP1 0.2253 ATG16L2:1.6732;SQSTM1:1.6092;ATG101:1.196;GABARAPL1:0.5356;RB1CC1:0.5127;ATG3:0.4708;ATG13:0.4225;ATF4:0.3833;MAP1LC3B:0.3695 149 | 148 MAPK3 0.2245 ATG14:1.7058;MAP1LC3B:0.9591;ULK1:0.8718;BAG3:0.8676;BNIP3:0.8201;ATG7:0.7816;BECN1:0.775;SQSTM1:0.7538;ATG12:0.6624 150 | 149 NOD2 0.2201 ATG16L1:3.6904;ATG4C:1.382;ULK2:0.7159;ATG9A:0.6117;ATG10:0.605;GABARAPL1:0.4267;ULK1:0.4263;NBR1:0.3798;ATG14:0.3422 151 | 150 TSC1 0.2201 RB1CC1:1.6864;MTOR:1.5955;GABARAP:0.97;MAP1LC3B:0.8146;ULK1:0.7372;BAG3:0.7336;TFEB:0.5892;LAMP1:0.3914;BNIP3:0.3869 152 | 151 TRAF6 0.219 CALCOCO2:1.5677;DRAM1:0.9112;SQSTM1:0.8678;NBR1:0.8464;ATG9A:0.7652;AMBRA1:0.6154;PIK3C3:0.4629;IRGM:0.389;BECN1:0.2905 153 | 152 ZBTB38 0.2187 RB1CC1:4.7377;ATG13:4.4246;ULK1:2.281;ATF4:1.4141;CASP3:0.0867 154 | 153 RPS6 0.2173 ATG13:1.8616;MTOR:1.6523;ULK1:1.4533;ATG4B:1.18;GABARAP:0.7774;BNIP3:0.5441;TFEB:0.4601;ATG12:0.4316;SQSTM1:0.3491 155 | 154 DVL2 0.2138 GABARAPL1:2.1529;NBR1:2.0059;GABARAP:1.9368;ATG13:1.8515;SQSTM1:0.8587;ULK1:0.5771;ATF4:0.2776;MTOR:0.1444;CASP3:0.0226 156 | 155 RAB9A 0.2126 ATG16L1:3.6196;ATG12:3.4513;ATG7:3.1979;ATG5:2.607 157 | 156 EIF2AK4 0.2124 ATF4:3.6751;ATG3:1.498;MAP1LC3B:1.2511;ATG7:0.7662;SQSTM1:0.7388;ATG5:0.5225;MTOR:0.4745;BECN1:0.3333;SIRT1:0.2026 158 | 157 RPTOR 0.212 AMBRA1:2.1685;ULK1:2.144;ATG13:1.7081;LAMP2:0.8192;TFEB:0.7195;ATG12:0.6783;BECN1:0.6318;SQSTM1:0.5571;SIRT1:0.1457 159 | 158 MCL1 0.2111 BAG3:1.0954;GABARAPL2:0.7568;AMBRA1:0.7383;BECN1:0.7357;GABARAPL1:0.6533;NBR1:0.586;PIK3C3:0.5609;UVRAG:0.4916;ATF4:0.4727 160 | 159 LRRK2 0.2108 IRGM:1.4246;ULK2:0.9459;ATG16L1:0.9289;ATG10:0.8083;GABARAPL1:0.5814;ULK1:0.5808;ATG3:0.5119;ATG14:0.4709;LAMP2:0.4645 161 | 160 ERN1 0.2103 NBR1:2.7905;ATF4:1.6235;SQSTM1:1.3763;BECN1:1.1639;ULK1:0.9746;LAMP1:0.9274;ATG5:0.43;MTOR:0.096;CASP3:0.0655 162 | 161 VAMP8 0.2094 ATG14:3.6672;UVRAG:2.1877;LAMP1:2.119;BNIP3:0.7313;SQSTM1:0.4798;ATG5:0.3305;MTOR:0.0718;CASP3:0.0165 163 | 162 CLN3 0.2091 WIPI2:3.0335;GABARAPL2:1.9485;IRGM:1.3851;ATG3:1.0136;LAMP1:0.9634;ATG12:0.5615;ATG7:0.2579;SQSTM1:0.247;BECN1:0.1956 164 | 163 IL23R 0.2079 ATG16L1:5.3997;ATG16L2:4.6527;ATG4C:3.6524;ATG5:0.1729;MTOR:0.036 165 | 164 BFAR 0.2075 BNIP3L:5.4351;BNIP3:4.8134;BAG3:4.3557 166 | 165 TRIB3 0.2067 MAP1LC3B:1.2673;BNIP3:1.0982;LAMP2:1.0744;SQSTM1:1.0163;ATG12:0.9018;ATG7:0.7777;ULK1:0.6946;ATG5:0.531;BECN1:0.3391 167 | 166 EIF4EBP1 0.2065 AMBRA1:1.1016;ATG12:0.9884;ULK1:0.8804;LAMP2:0.8088;ATG5:0.589;TFEB:0.5099;ATG3:0.5074;ATG7:0.4047;MAP1LC3B:0.3993 168 | 167 MAPK15 0.2064 GABARAP:3.8158;MAP1LC3B:3.5049;ULK1:2.4724;SQSTM1:1.8107 169 | 168 STX8 0.2063 UVRAG:5.5301;BNIP3L:5.3308;BNIP3:3.2317 170 | 169 FBXO32 0.206 GABARAPL1:1.5044;BNIP3:1.2932;ATG13:1.2572;ULK1:0.837;ATG12:0.7959;BECN1:0.5353;PINK1:0.5064;MTOR:0.4185;ATG7:0.3816 171 | 170 PLEKHM1 0.2045 UVRAG:4.4658;PINK1:2.4702;LAMP1:2.3127;SQSTM1:1.7402 172 | 171 STK11 0.2042 WIPI1:1.604;UVRAG:0.9674;MAP1LC3B:0.9069;ULK1:0.7424;ATG4B:0.5754;SIRT1:0.5041;MTOR:0.476;GABARAP:0.3521;BECN1:0.3187 173 | 172 PMAIP1 0.2032 ATF4:1.2568;ATG4B:1.1784;GABARAP:0.7762;ATG12:0.7622;BNIP3:0.7535;MAP1LC3B:0.6452;ATG7:0.5155;BECN1:0.5107;ATG16L1:0.4807 174 | 173 BIK 0.2017 BNIP3:2.4201;BAG3:1.7416;ULK1:1.124;LAMP2:1.0388;SQSTM1:0.7227;ATG5:0.7106;ATF4:0.5934;BECN1:0.3251;CASP3:0.1916 175 | 174 DTYMK 0.2015 MAP1LC3B:5.4063;BNIP3:4.1527;SQSTM1:3.4636 176 | 175 BAX 0.2011 WIPI2:1.9132;CASP3:0.8206;UVRAG:0.7206;BNIP3L:0.6438;BNIP3:0.5667;SQSTM1:0.443;MAP1LC3B:0.3748;ATF4:0.3575;ULK1:0.3343 177 | 176 MAPK14 0.2009 DRAM1:2.1991;PIK3C3:1.3467;MAP1LC3B:1.1426;GABARAP:0.8181;ULK1:0.6143;ATG12:0.457;BECN1:0.4235;ATG5:0.3634;ATF4:0.2974 178 | 177 GLTP 0.1981 ATG9A:4.5748;ULK1:1.643;ATG7:1.1547;SQSTM1:1.118;ATG5:0.8187;MTOR:0.2034 179 | 178 NRF1 0.1977 SQSTM1:1.342;ULK1:1.2584;SIRT1:1.0873;PINK1:1.0818;TFEB:1.0377;BNIP3:0.7156;BECN1:0.675;ATG5:0.5858;ATG7:0.4876 180 | 179 RICTOR 0.1975 WIPI1:2.2764;ULK2:1.7531;ULK1:0.6263;GABARAP:0.6051;SQSTM1:0.5844;MAP1LC3B:0.4981;LAMP2:0.4049;TFEB:0.3495;LAMP1:0.2257 181 | 180 RAB9B 0.197 ATG12:5.2008;ATG7:3.9742;ATG5:3.3457 182 | 181 AKT1 0.1967 ATG16L2:0.7116;ATG2B:0.6076;PIK3C3:0.5206;WIPI1:0.4817;MTOR:0.4177;MAP1LC3A:0.3992;UVRAG:0.3544;ULK2:0.3155;ATG10:0.2608 183 | 182 CASP2 0.1934 ULK2:3.3024;BNIP3L:1.9718;BNIP3:1.17;ATF4:0.664;CASP3:0.5749;BECN1:0.3678;MTOR:0.3123;SIRT1:0.1167 184 | 183 SESN1 0.1928 BNIP3:2.1893;ATG12:1.8916;BECN1:1.4082;SQSTM1:1.0455;MTOR:0.7557;SIRT1:0.3102;CASP3:0.044 185 | 184 SIRT6 0.1923 ATG10:1.8596;IRGM:1.1237;MAP1LC3B:1.0894;ATG3:0.8036;ULK1:0.5808;ATG12:0.4309;SQSTM1:0.3485;ATG5:0.342;LAMP1:0.3005 186 | 185 VTI1B 0.1911 UVRAG:3.9434;LAMP1:2.6806;ATG16L1:2.4904;SQSTM1:1.3763 187 | 186 MFN2 0.1903 BNIP3:1.3738;AMBRA1:1.1215;GABARAPL1:1.0056;MAP1LC3B:0.7262;BNIP3L:0.6961;ULK1:0.5174;SQSTM1:0.3973;BECN1:0.3874;ATG5:0.3319 188 | 187 MAFK 0.1902 GABARAPL1:3.1885;SQSTM1:1.187;ULK1:1.1097;LAMP1:1.0581;ATG5:0.8744;ATF4:0.5845 189 | 188 HSPB8 0.1899 ATG10:2.8884;SQSTM1:1.8728;TFEB:1.4989;MAP1LC3B:1.2472;BECN1:0.6016;MTOR:0.0608;CASP3:0.0277 190 | 189 CRY2 0.1894 ATG2B:2.7832;ATG10:1.6899;ATG14:1.1003;ATG13:1.0794;ATG3:0.7059;TFEB:0.3977;ATG12:0.3726;SIRT1:0.1087;ATG5:0.105 191 | 190 DUT 0.1889 ATG4B:2.4217;BNIP3L:2.2288;ATG3:1.8365;BNIP3:0.8389;SQSTM1:0.5571;BECN1:0.4503;CASP3:0.0197 192 | 191 TRAF2 0.1885 RB1CC1:2.4065;BNIP3L:1.9219;ULK1:0.7195;BECN1:0.6361;ATG7:0.4579;SQSTM1:0.4399;PINK1:0.4284;ATF4:0.3549;SIRT1:0.215 193 | 192 NPC1 0.1885 ATG10:1.3132;LAMP1:1.0332;LAMP2:0.8081;UVRAG:0.7617;IRGM:0.7364;BNIP3L:0.6815;ATG3:0.5069;GABARAP:0.488;ATG7:0.3133 194 | 193 VAPA 0.1882 VMP1:3.0539;GABARAPL2:2.7681;BNIP3L:1.9891;ULK1:0.7558;BNIP3:0.7095 195 | 194 MAPK9 0.1876 MAP1LC3B:2.7406;BECN1:2.0741;BNIP3:1.7243;SQSTM1:1.2491;SIRT1:0.3901;MTOR:0.2366;CASP3:0.1113 196 | 195 SEC16A 0.1875 ATG13:4.4669;MAP1LC3B:3.3303;ULK1:3.1638 197 | 196 CLTC 0.1869 TFEB:2.8511;MAP1LC3B:2.0415;SQSTM1:1.3278;LAMP1:1.1891;ATG7:0.8409 198 | 197 TARDBP 0.1865 SQSTM1:2.2751;NBR1:1.6015;ATG4B:1.4282;BAG3:0.7306;TFEB:0.5867;PINK1:0.4381;ATG7:0.2529;BECN1:0.1918;ATG5:0.1627 199 | 198 SNX2 0.1865 ATG10:4.6764;GABARAPL2:4.3611;TFEB:2.171 200 | 199 GPSM3 0.1862 ATG14:5.8795;SQSTM1:2.7765;BECN1:2.4722 201 | 200 LRPPRC 0.1859 ATG12:2.2771;PINK1:1.6769;BECN1:1.4651;ATG5:1.3094;ULK1:1.2447;MTOR:0.1345;CASP3:0.0621 -------------------------------------------------------------------------------- /Data/biojupies_genes1.tsv: -------------------------------------------------------------------------------- 1 | Accession Up/Down Gene Effect GSE89672 up STARD4 Activate GSE89672 up UNC13A Activate GSE89672 up POLR2J2 Activate GSE89672 up DNAAF1 Activate GSE89672 up CACNA2D4 Activate GSE89672 up HPCAL1 Activate GSE89672 up SOX13 Activate GSE89672 up C12ORF76 Activate GSE89672 up CPEB2 Activate GSE89672 up SCD Activate GSE89672 up CPEB1 Activate GSE89672 up TMEM79 Activate GSE89672 up PI4K2A Activate GSE89672 up MAML3 Activate GSE89672 up TRIM16L Activate GSE89672 up AP5Z1 Activate GSE89672 up SERPINE2 Activate GSE89672 up KIAA1211 Activate GSE89672 up SLC5A3 Activate GSE89672 up RP11-577H5.5 Activate GSE89672 up APOL6 Activate GSE89672 up LURAP1L Activate GSE89672 up ST3GAL1 Activate GSE89672 up FDFT1 Activate GSE89672 up NGFR Activate GSE89672 up CNOT6L Activate GSE89672 up PROSER1 Activate GSE89672 up GABARAPL1 Activate GSE89672 up AC008522.1 Activate GSE89672 up PLK3 Activate GSE89672 up PRKCE Activate GSE89672 up MTHFR Activate GSE89672 up GPR137B Activate GSE89672 up SQLE Activate GSE89672 up SLC6A6 Activate GSE89672 up FOSL1 Activate GSE89672 up BCAN Activate GSE89672 up ABTB1 Activate GSE89672 up SLC6A9 Activate GSE89672 up SNAI3 Activate GSE89672 up SNAI1 Activate GSE89672 up HBP1 Activate GSE89672 up KDM7A Activate GSE89672 up ATF4 Activate GSE89672 up TDRKH Activate GSE89672 up CH17-472G23.2 Activate GSE89672 up HHLA1 Activate GSE89672 up ZNF251 Activate GSE89672 up COL13A1 Activate GSE89672 up NEDD4L Activate GSE89672 up F11R Activate GSE89672 up PLA2G6 Activate GSE89672 up TSKU Activate GSE89672 up GRIN2B Activate GSE89672 up ZNF280A Activate GSE89672 up NETO1 Activate GSE89672 up HMOX1 Activate GSE89672 up IER2 Activate GSE89672 up FAM19A5 Activate GSE89672 up RPL23AP87 Activate GSE89672 up DUSP5 Activate GSE89672 up LYN Activate GSE89672 up CHKA Activate GSE89672 up FAM3C2 Activate GSE89672 up EMP1 Activate GSE89672 up SLC7A5 Activate GSE89672 up SLC7A8 Activate GSE89672 up PQLC2 Activate GSE89672 up BHLHE40 Activate GSE89672 up JDP2 Activate GSE89672 up GARS Activate GSE89672 up ZNF114 Activate GSE89672 up HRK Activate GSE89672 up C9ORF91 Activate GSE89672 up GRAMD1B Activate GSE89672 up BTG1 Activate GSE89672 up ABHD6 Activate GSE89672 up SH3BGRL2 Activate GSE89672 up TCP11L2 Activate GSE89672 up RHPN1 Activate GSE89672 up TIMP1 Activate GSE89672 up RIPK2 Activate GSE89672 up DFFA Activate GSE89672 up ARG2 Activate GSE89672 up WDR19 Activate GSE89672 up CD180 Activate GSE89672 up SERPINB8 Activate GSE89672 up GID4 Activate GSE89672 up CLIP4 Activate GSE89672 up OAF Activate GSE89672 up CLIP2 Activate GSE89672 up SLCO4C1 Activate GSE89672 up FOSB Activate GSE89672 up PELI2 Activate GSE89672 up HSD17B7P2 Activate GSE89672 up ZNF697 Activate GSE89672 up STAG3L1 Activate GSE89672 up CCNDBP1 Activate GSE89672 up NSDHL Activate GSE89672 up ZSCAN31 Activate GSE89672 up GPNMB Activate GSE89672 up TMEM38A Activate GSE89672 up GPAT3 Activate GSE89672 up FADS2 Activate GSE89672 up SLC17A5 Activate GSE89672 up RNF43 Activate GSE89672 up SEMA4B Activate GSE89672 up PHLDA1 Activate GSE89672 up TLE3 Activate GSE89672 up PCDH8 Activate GSE89672 up GPT2 Activate GSE89672 up SEMA4D Activate GSE89672 up CYBRD1 Activate GSE89672 up CORO2B Activate GSE89672 up PSAT1 Activate GSE89672 up FKBP9 Activate GSE89672 up ADM2 Activate GSE89672 up PDCD4 Activate GSE89672 up PTPN7 Activate GSE89672 up ERP29 Activate GSE89672 up SQSTM1 Activate GSE89672 up DHCR7 Activate GSE89672 up CNIH3 Activate GSE89672 up KCNG1 Activate GSE89672 up CHRM3 Activate GSE89672 up ALDH1L2 Activate GSE89672 up SLC27A2 Activate GSE89672 up SLC27A1 Activate GSE89672 up CCNT1 Activate GSE89672 up LSMEM1 Activate GSE89672 up PPP1R15A Activate GSE89672 up MPV17L2 Activate GSE89672 up EGFR Activate GSE89672 up NPAS2 Activate GSE89672 up FAM117B Activate GSE89672 up RNFT2 Activate GSE89672 up CTGF Activate GSE89672 up BCL2L11 Activate GSE89672 up CDH4 Activate GSE89672 up SC5D Activate GSE89672 up GRB10 Activate GSE89672 up STX3 Activate GSE89672 up ACSS2 Activate GSE89672 up LDLR Activate GSE89672 up WDTC1 Activate GSE89672 up SH2B3 Activate GSE89672 up STOX1 Activate GSE89672 up TMEM132E Activate GSE89672 up CERS4 Activate GSE89672 up KCND1 Activate GSE89672 up SLC38A2 Activate GSE89672 up ADGRV1 Activate GSE89672 up SLC38A1 Activate GSE89672 up PCYT2 Activate GSE89672 up GOT1 Activate GSE89672 up RABL2A Activate GSE89672 up ZFP69B Activate GSE89672 up FBXO32 Activate GSE89672 up MAFF Activate GSE89672 up KIFC3 Activate GSE89672 up TPP1 Activate GSE89672 up SDAD1P1 Activate GSE89672 up TRIM73 Activate GSE89672 up PFKFB4 Activate GSE89672 up BRI3 Activate GSE89672 up INSIG1 Activate GSE89672 up EIF4EBP1 Activate GSE89672 up FAM107B Activate GSE89672 up PHF21A Activate GSE89672 up SAT1 Activate GSE89672 up SAT2 Activate GSE89672 up OSBPL10 Activate GSE89672 up RP13-582O9.6 Activate GSE89672 up KRBOX4 Activate GSE89672 up SESN2 Activate GSE89672 up THEM6 Activate GSE89672 up PLXNA2 Activate GSE89672 up SH2D5 Activate GSE89672 up KCNJ11 Activate GSE89672 up KSR2 Activate GSE89672 up HMGCS1 Activate GSE89672 up ITGA2 Activate GSE89672 up ASNS Activate GSE89672 up WIPI1 Activate GSE89672 up DHCR24 Activate GSE89672 up NRG3 Activate GSE89672 up MERTK Activate GSE89672 up TNFRSF21 Activate GSE89672 up NPC2 Activate GSE89672 up BCL6 Activate GSE89672 up OGT Activate GSE89672 up ITGA6 Activate GSE89672 up KHDRBS3 Activate GSE89672 up SLC48A1 Activate GSE89672 up ONECUT3 Activate GSE89672 up CHMP1B2P Activate GSE89672 up SHMT2 Activate GSE89672 up ST20-MTHFS Activate GSE89672 up BICD1 Activate GSE89672 up ITPR1 Activate GSE89672 up ADAMTS17 Activate GSE89672 up KDSR Activate GSE89672 up FRG1CP Activate GSE89672 up PPP6R2 Activate GSE89672 up RP11-2C24.9 Activate GSE89672 up RDH11 Activate GSE89672 up AC024592.12 Activate GSE89672 up DNAJB9 Activate GSE89672 up SPX Activate GSE89672 up PGPEP1 Activate GSE89672 up PRKG2 Activate GSE89672 up ZNF620 Activate GSE89672 up FNIP1 Activate GSE89672 up SMIM14 Activate GSE89672 up LIMCH1 Activate GSE89672 up UNC5B Activate GSE89672 up CYP51A1 Activate GSE89672 up RALGAPA2 Activate GSE89672 up MID1IP1 Activate GSE89672 up NICN1 Activate GSE89672 up COBL Activate GSE89672 up FBXL13 Activate GSE89672 up RBM14-RBM4 Activate GSE89672 up CTDSP2 Activate GSE89672 up GLRB Activate GSE89672 up TXNIP Activate GSE89672 up TRIM38 Activate GSE89672 up SMPDL3B Activate GSE89672 up CEBPB Activate GSE89672 up GPR89B Activate GSE89672 up ITGB5 Activate GSE89672 up CEBPG Activate GSE89672 up DNHD1 Activate GSE89672 up PPM1E Activate GSE89672 up FKBP9P1 Activate GSE89672 up EFR3B Activate GSE89672 up LRRC8D Activate GSE89672 up TRIM25 Activate GSE89672 up PCDH7 Activate GSE89672 up ITGB8 Activate GSE89672 up UPP1 Activate GSE89672 up NEO1 Activate GSE89672 up CCNJL Activate GSE89672 up IFRD1 Activate GSE89672 up PLEKHA6 Activate GSE89672 up PLEKHA7 Activate GSE89672 up MYO7A Activate GSE89672 up TMEM170B Activate GSE89672 up TM4SF1 Activate GSE89672 up DCLK1 Activate GSE89672 up ASS1 Activate GSE89672 up RRAGD Activate GSE89672 up FLYWCH1 Activate GSE89672 up ASNSP1 Activate GSE89672 up CTH Activate GSE89672 up NEURL2 Activate GSE89672 up UHRF1BP1 Activate GSE89672 up BCOR Activate GSE89672 up ALPK1 Activate GSE89672 up TMEM87B Activate GSE89672 up EPAS1 Activate GSE89672 up LINC01057 Activate GSE89672 up AC009022.1 Activate GSE89672 up GLRX Activate GSE89672 up CBLB Activate GSE89672 up ANTXR2 Activate GSE89672 up RASIP1 Activate GSE89672 up LRP8 Activate GSE89672 up CYB5D2 Activate GSE89672 up PARD6A Activate GSE89672 up PNP Activate GSE89672 up C1GALT1C1 Activate GSE89672 up IFI16 Activate GSE89672 up NIPAL4 Activate GSE89672 up CHAC1 Activate GSE89672 up CMB9-22P13.1 Activate GSE89672 up SRGAP2C Activate GSE89672 up WWTR1 Activate GSE89672 up EGR1 Activate GSE89672 up XBP1 Activate GSE89672 up ARRDC1 Activate GSE89672 up ST8SIA1 Activate GSE89672 up CH17-258A22.4 Activate GSE89672 up ARRDC3 Activate GSE89672 up SIAH2 Activate GSE89672 up RAB39B Activate GSE89672 up ARC Activate GSE89672 up PIK3R1 Activate GSE89672 up WNK4 Activate GSE89672 up CYSTM1 Activate GSE89672 up BEX2 Activate GSE89672 up EPHA10 Activate GSE89672 up CREBRF Activate GSE89672 up TXNDC12 Activate GSE89672 up AC069368.3 Activate GSE89672 up TMTC1 Activate GSE89672 up C14ORF1 Activate GSE89672 up FTH1 Activate GSE89672 up KIF21B Activate GSE89672 up ARSG Activate GSE89672 down UNC13D Activate GSE89672 down CD3EAP Activate GSE89672 down GDAP1 Activate GSE89672 down COMTD1 Activate GSE89672 down C12ORF75 Activate GSE89672 down LARP7 Activate GSE89672 down EID1 Activate GSE89672 down MYL6 Activate GSE89672 down TRIP6 Activate GSE89672 down MTHFD1 Activate GSE89672 down PSMC3 Activate GSE89672 down POP1 Activate GSE89672 down DCHS2 Activate GSE89672 down PCDHB5 Activate GSE89672 down HNRNPC Activate GSE89672 down HNRNPD Activate GSE89672 down DCHS1 Activate GSE89672 down MYL9 Activate GSE89672 down MT-ND5 Activate GSE89672 down MT-CO1 Activate GSE89672 down PGAP3 Activate GSE89672 down MT-CO2 Activate GSE89672 down COL12A1 Activate GSE89672 down SERPINE1 Activate GSE89672 down HNRNPU Activate GSE89672 down AKIP1 Activate GSE89672 down C1ORF198 Activate GSE89672 down NCAPH Activate GSE89672 down MT-ND4 Activate GSE89672 down NEURL1B Activate GSE89672 down CREB3L1 Activate GSE89672 down PPP4R1 Activate GSE89672 down RNF115 Activate GSE89672 down UGP2 Activate GSE89672 down GPATCH1 Activate GSE89672 down LACTB Activate GSE89672 down PLCE1 Activate GSE89672 down RP11-454P7.3 Activate GSE89672 down TAF9B Activate GSE89672 down FZD1 Activate GSE89672 down NCAPH2 Activate GSE89672 down MCAM Activate GSE89672 down ZNF260 Activate GSE89672 down PLK2 Activate GSE89672 down GPN1 Activate GSE89672 down BAZ1B Activate GSE89672 down NUDT16L1 Activate GSE89672 down DHFR Activate GSE89672 down BACE1 Activate GSE89672 down FOSL2 Activate GSE89672 down EHD2 Activate GSE89672 down VANGL2 Activate GSE89672 down MLLT11 Activate GSE89672 down EIF6 Activate GSE89672 down PSME3 Activate GSE89672 down CFAP58 Activate GSE89672 down MT-CO3 Activate GSE89672 down H2AFY2 Activate GSE89672 down TSTA3 Activate GSE89672 down TRIO Activate GSE89672 down DIS3L Activate GSE89672 down NCAPG2 Activate GSE89672 down SMC4 Activate GSE89672 down SMC2 Activate GSE89672 down MYLK Activate GSE89672 down ZXDA Activate GSE89672 down ZXDB Activate GSE89672 down GPR176 Activate GSE89672 down EPB41L2 Activate GSE89672 down STMN1 Activate GSE89672 down MYO18B Activate GSE89672 down SERPINH1 Activate GSE89672 down SFN Activate GSE89672 down MYBL1 Activate GSE89672 down TCF19 Activate GSE89672 down ANXA2 Activate GSE89672 down DUSP1 Activate GSE89672 down ANXA3 Activate GSE89672 down PCIF1 Activate GSE89672 down ANXA6 Activate GSE89672 down CGN Activate GSE89672 down WNT9A Activate GSE89672 down GP6 Activate GSE89672 down DCBLD1 Activate GSE89672 down CS Activate GSE89672 down WDR34 Activate GSE89672 down CENPF Activate GSE89672 down MRAS Activate GSE89672 down LYRM5 Activate GSE89672 down CLCF1 Activate GSE89672 down CENPM Activate GSE89672 down LIMS1 Activate GSE89672 down PHF19 Activate GSE89672 down RP11-544M22.13 Activate GSE89672 down CENPT Activate GSE89672 down LIMS2 Activate GSE89672 down C11ORF31 Activate GSE89672 down ANXA8L1 Activate GSE89672 down KCNC1 Activate GSE89672 down RASAL2 Activate GSE89672 down IQGAP3 Activate GSE89672 down CTCF Activate GSE89672 down HOXC11 Activate GSE89672 down MRPL33 Activate GSE89672 down FAM171A1 Activate GSE89672 down TRIM6 Activate GSE89672 down CSRP1 Activate GSE89672 down TK1 Activate GSE89672 down PLEKHN1 Activate GSE89672 down TCP11L1 Activate GSE89672 down ZNF467 Activate GSE89672 down AP1M2 Activate GSE89672 down RIC1 Activate GSE89672 down GTF2H3 Activate GSE89672 down DYNLL2 Activate GSE89672 down DHRS2 Activate GSE89672 down TUBB4B Activate GSE89672 down SERPINB6 Activate GSE89672 down SNX17 Activate GSE89672 down UBBP4 Activate GSE89672 down MSRB3 Activate GSE89672 down GOPC Activate GSE89672 down MTMR11 Activate GSE89672 down FSTL1 Activate GSE89672 down FSTL3 Activate GSE89672 down JPH2 Activate GSE89672 down OVCA2 Activate GSE89672 down LFNG Activate GSE89672 down GGTLC2 Activate GSE89672 down NDST1 Activate GSE89672 down TUBA1C Activate GSE89672 down TUBA1B Activate GSE89672 down MINOS1 Activate GSE89672 down BRD9 Activate GSE89672 down SUPT16H Activate GSE89672 down C21ORF33 Activate GSE89672 down TPM4 Activate GSE89672 down HNRNPAB Activate GSE89672 down RAB30 Activate GSE89672 down RBX1 Activate GSE89672 down MOB3B Activate GSE89672 down RAB32 Activate GSE89672 down PKP3 Activate GSE89672 down RPL13AP5 Activate GSE89672 down PKP4 Activate GSE89672 down SRSF6 Activate GSE89672 down TCTA Activate GSE89672 down SRSF7 Activate GSE89672 down AJUBA Activate GSE89672 down FKBP4 Activate GSE89672 down RAB1B Activate GSE89672 down COL16A1 Activate GSE89672 down PHLDB2 Activate GSE89672 down PHLDB1 Activate GSE89672 down GPS2 Activate GSE89672 down SRSF1 Activate GSE89672 down URM1 Activate GSE89672 down SRSF2 Activate GSE89672 down UCP2 Activate GSE89672 down HIKESHI Activate GSE89672 down TUBA3C Activate GSE89672 down RP11-294C11.3 Activate GSE89672 down RUVBL1 Activate GSE89672 down RBBP6 Activate GSE89672 down CFL2 Activate GSE89672 down TPM1 Activate GSE89672 down FLNB Activate GSE89672 down CSE1L Activate GSE89672 down LZTS1 Activate GSE89672 down MISP Activate GSE89672 down PSKH1 Activate GSE89672 down KPNA2 Activate GSE89672 down HMGN2 Activate GSE89672 down ATP8B2 Activate GSE89672 down UROS Activate GSE89672 down PHKB Activate GSE89672 down RCAN1 Activate GSE89672 down FRMD6 Activate GSE89672 down TFDP1 Activate GSE89672 down ARPC3 Activate GSE89672 down ARPC4 Activate GSE89672 down LHX1 Activate GSE89672 down ACTBL2 Activate GSE89672 down BIRC5 Activate GSE89672 down SMS Activate GSE89672 down ZNF532 Activate GSE89672 down NRSN2 Activate GSE89672 down NCF2 Activate GSE89672 down TPMT Activate GSE89672 down IPO4 Activate GSE89672 down OLFML2A Activate GSE89672 down ELFN2 Activate GSE89672 down CORO1C Activate GSE89672 down MAP3K7CL Activate GSE89672 down MMP24 Activate GSE89672 down AC171558.1 Activate GSE89672 down IPO9 Activate GSE89672 down C1QTNF2 Activate GSE89672 down EFEMP2 Activate GSE89672 down SCMH1 Activate GSE89672 down ESD Activate GSE89672 down HNRNPDL Activate GSE89672 down ROS1 Activate GSE89672 down SEMA7A Activate GSE89672 down DGCR2 Activate GSE89672 down SLC2A4RG Activate GSE89672 down FUS Activate GSE89672 down LANCL2 Activate GSE89672 down TMLHE Activate GSE89672 down ESPL1 Activate GSE89672 down CDK2 Activate GSE89672 down NF2 Activate GSE89672 down MCM4 Activate GSE89672 down TRIM58 Activate GSE89672 down NES Activate GSE89672 down TMEM255A Activate GSE89672 down MCM7 Activate GSE89672 down EIF4E3 Activate GSE89672 down MT-CYB Activate GSE89672 down IQCA1 Activate GSE89672 down KHDRBS1 Activate GSE89672 down MAPKAP1 Activate GSE89672 down FAM114A1 Activate GSE89672 down NDUFB3 Activate GSE89672 down DUSP16 Activate GSE89672 down CYR61 Activate GSE89672 down LBH Activate GSE89672 down RIC8A Activate GSE89672 down DNAJB2 Activate GSE89672 down ADAMTS15 Activate GSE89672 down CCDC85C Activate GSE89672 down MGAT5B Activate GSE89672 down CCDC85B Activate GSE89672 down ME2 Activate GSE89672 down EIF4H Activate GSE89672 down BOK Activate GSE89672 down PLEKHG4 Activate GSE89672 down PLEKHG3 Activate GSE89672 down CKAP2L Activate GSE89672 down UNC5C Activate GSE89672 down SMIM10L1 Activate GSE89672 down SPAG5 Activate GSE89672 down SLC25A1P5 Activate GSE89672 down TMEM256-PLSCR3 Activate GSE89672 down PRC1 Activate GSE89672 down CIRBP Activate GSE89672 down CDC42 Activate GSE89672 down RNF20 Activate GSE89672 down KLF2 Activate GSE89672 down ATXN10 Activate GSE89672 down SLC25A10 Activate GSE89672 down STUB1 Activate GSE89672 down RECK Activate GSE89672 down CCDC62 Activate GSE89672 down EIF4A2 Activate GSE89672 down GPR89A Activate GSE89672 down UHRF1 Activate GSE89672 down KIAA0101 Activate GSE89672 down CDC45 Activate GSE89672 down HIRIP3 Activate GSE89672 down SGCB Activate GSE89672 down ADAMTS1 Activate GSE89672 down SUMO3 Activate GSE89672 down BEND3 Activate GSE89672 down HNRNPA3 Activate GSE89672 down NPIPA5 Activate GSE89672 down DUT Activate GSE89672 down ESCO2 Activate GSE89672 down ACTN4 Activate GSE89672 down P3H2 Activate GSE89672 down C7ORF25 Activate GSE89672 down MYO7B Activate GSE89672 down GCAT Activate GSE89672 down KATNAL1 Activate GSE89672 down HIST1H4H Activate GSE89672 down ANP32E Activate GSE89672 down SUCLG2 Activate GSE89672 down KIF20A Activate GSE89672 down DNA2 Activate GSE89672 down KIF20B Activate GSE89672 down PFN2 Activate GSE89672 down MT1E Activate GSE89672 down TAGLN Activate GSE89672 down AQP1 Activate GSE89672 down NTN4 Activate GSE89672 down STX11 Activate GSE89672 down ACTB Activate GSE89672 down RFPL4A Activate GSE89672 down MAGEA8 Activate GSE89672 down RAB11FIP1 Activate GSE89672 down RACGAP1 Activate GSE89672 down ZNF827 Activate GSE89672 down RAD54L Activate GSE89672 down IARS2 Activate GSE89672 down ARVCF Activate GSE89672 down GBAS Activate GSE89672 down MYL12A Activate GSE89672 down ALDH7A1 Activate GSE89672 down TNNT1 Activate GSE89672 down NDUFAF3 Activate -------------------------------------------------------------------------------- /Data/biojupies_genes2.tsv: -------------------------------------------------------------------------------- 1 | Accession Up/Down Gene Effect GSE100888 up UNC13C Inhibit GSE100888 up MED4 Inhibit GSE100888 up DNAAF3 Inhibit GSE100888 up CACNA2D1 Inhibit GSE100888 up AFAP1 Inhibit GSE100888 up PCDHGA10 Inhibit GSE100888 up PCDHGA11 Inhibit GSE100888 up NUP93 Inhibit GSE100888 up ADPRM Inhibit GSE100888 up MTHFD2 Inhibit GSE100888 up SCO2 Inhibit GSE100888 up PCDHB3 Inhibit GSE100888 up NHLRC2 Inhibit GSE100888 up TNFSF8 Inhibit GSE100888 up E430025E21RIK Inhibit GSE100888 up RB1 Inhibit GSE100888 up CYFIP2 Inhibit GSE100888 up ATF3 Inhibit GSE100888 up NYAP2 Inhibit GSE100888 up ADCY1 Inhibit GSE100888 up SGMS1 Inhibit GSE100888 up LCAT Inhibit GSE100888 up SNX32 Inhibit GSE100888 up TFPI Inhibit GSE100888 up APOL6 Inhibit GSE100888 up FBXL21 Inhibit GSE100888 up CREB3L1 Inhibit GSE100888 up CAPNS2 Inhibit GSE100888 up FAM205A4 Inhibit GSE100888 up ZFP281 Inhibit GSE100888 up FAM205A2 Inhibit GSE100888 up MXI1 Inhibit GSE100888 up GM17081 Inhibit GSE100888 up SERPINF1 Inhibit GSE100888 up STOM Inhibit GSE100888 up CYP1B1 Inhibit GSE100888 up PRKCI Inhibit GSE100888 up ABCA1 Inhibit GSE100888 up NAPSA Inhibit GSE100888 up NCKAP1L Inhibit GSE100888 up STARD13 Inhibit GSE100888 up PLK2 Inhibit GSE100888 up MTHFR Inhibit GSE100888 up GM19026 Inhibit GSE100888 up BAZ1A Inhibit GSE100888 up CLPX Inhibit GSE100888 up EHD4 Inhibit GSE100888 up RP23-145I16.3 Inhibit GSE100888 up PRKD1 Inhibit GSE100888 up FREM3 Inhibit GSE100888 up ATF4 Inhibit GSE100888 up GM10340 Inhibit GSE100888 up TFRC Inhibit GSE100888 up NCAPG2 Inhibit GSE100888 up CDCA8 Inhibit GSE100888 up ENO4 Inhibit GSE100888 up ELK3 Inhibit GSE100888 up SMC3 Inhibit GSE100888 up ZC3H12C Inhibit GSE100888 up KCNMB2 Inhibit GSE100888 up GM18190 Inhibit GSE100888 up PCDHA6 Inhibit GSE100888 up MYO18B Inhibit GSE100888 up GSG1L Inhibit GSE100888 up CYB5R1 Inhibit GSE100888 up LYN Inhibit GSE100888 up ANXA3 Inhibit GSE100888 up 9930021J03RIK Inhibit GSE100888 up BC048403 Inhibit GSE100888 up SLC7A5 Inhibit GSE100888 up FAM101B Inhibit GSE100888 up UBAP1 Inhibit GSE100888 up PMP2 Inhibit GSE100888 up GARS Inhibit GSE100888 up GM13509 Inhibit GSE100888 up ISPD Inhibit GSE100888 up TINAGL1 Inhibit GSE100888 up SLC7A1 Inhibit GSE100888 up SLC7A3 Inhibit GSE100888 up LDHD Inhibit GSE100888 up GM3739 Inhibit GSE100888 up BCLAF1 Inhibit GSE100888 up CASP12 Inhibit GSE100888 up GM4944 Inhibit GSE100888 up TK1 Inhibit GSE100888 up ZFP488 Inhibit GSE100888 up HAVCR2 Inhibit GSE100888 up WDR17 Inhibit GSE100888 up SERPINB5 Inhibit GSE100888 up P2RY14 Inhibit GSE100888 up TMOD1 Inhibit GSE100888 up CDKN2B Inhibit GSE100888 up STAT2 Inhibit GSE100888 up STAT3 Inhibit GSE100888 up GPR4 Inhibit GSE100888 up F3 Inhibit GSE100888 up SULF2 Inhibit GSE100888 up LRG1 Inhibit GSE100888 up ADAM18 Inhibit GSE100888 up COL4A1 Inhibit GSE100888 up CLIP1 Inhibit GSE100888 up AGBL4 Inhibit GSE100888 up ANKRD44 Inhibit GSE100888 up GPR45 Inhibit GSE100888 up KCNA4 Inhibit GSE100888 up RARS Inhibit GSE100888 up JRKL Inhibit GSE100888 up TMEM140 Inhibit GSE100888 up CDC34B Inhibit GSE100888 up PRSS23 Inhibit GSE100888 up SMG6 Inhibit GSE100888 up FSTL4 Inhibit GSE100888 up NUDT12 Inhibit GSE100888 up FADS3 Inhibit GSE100888 up FAM102B Inhibit GSE100888 up GM26602 Inhibit GSE100888 up MRC1 Inhibit GSE100888 up PLAGL2 Inhibit GSE100888 up PLAGL1 Inhibit GSE100888 up 4930578G10RIK Inhibit GSE100888 up FADS2 Inhibit GSE100888 up GM13301 Inhibit GSE100888 up PPIL1 Inhibit GSE100888 up GM13304 Inhibit GSE100888 up PLXNC1 Inhibit GSE100888 up GM13302 Inhibit GSE100888 up GPR55 Inhibit GSE100888 up ANKRD23 Inhibit GSE100888 up SARS Inhibit GSE100888 up GOLM1 Inhibit GSE100888 up 4930523C07RIK Inhibit GSE100888 up HIPK2 Inhibit GSE100888 up LRCH1 Inhibit GSE100888 up OBSCN Inhibit GSE100888 up OLFR558 Inhibit GSE100888 up ADAM9 Inhibit GSE100888 up SQSTM1 Inhibit GSE100888 up ZFP433 Inhibit GSE100888 up GM9762 Inhibit GSE100888 up NBAS Inhibit GSE100888 up CSF3R Inhibit GSE100888 up ALDH1L2 Inhibit GSE100888 up SLA Inhibit GSE100888 up PROS1 Inhibit GSE100888 up CASC5 Inhibit GSE100888 up ATP10D Inhibit GSE100888 up IL6RA Inhibit GSE100888 up TNC Inhibit GSE100888 up JAKMIP2 Inhibit GSE100888 up FGD2 Inhibit GSE100888 up FOXO1 Inhibit GSE100888 up NRAS Inhibit GSE100888 up BCL2L11 Inhibit GSE100888 up ZFP36 Inhibit GSE100888 up ABLIM3 Inhibit GSE100888 up SH3BP2 Inhibit GSE100888 up SLC16A7 Inhibit GSE100888 up LEO1 Inhibit GSE100888 up SH3BP5 Inhibit GSE100888 up A230052G05RIK Inhibit GSE100888 up GM14648 Inhibit GSE100888 up NPTX2 Inhibit GSE100888 up VMN2R1 Inhibit GSE100888 up MAP3K8 Inhibit GSE100888 up SH2B2 Inhibit GSE100888 up GM7694 Inhibit GSE100888 up TMEM132D Inhibit GSE100888 up LRRC46 Inhibit GSE100888 up SLC38A1 Inhibit GSE100888 up F2R Inhibit GSE100888 up GM14416 Inhibit GSE100888 up OSBPL3 Inhibit GSE100888 up DYRK1A Inhibit GSE100888 up FOXN3 Inhibit GSE100888 up ABHD15 Inhibit GSE100888 up IGSF10 Inhibit GSE100888 up MOB1A Inhibit GSE100888 up CYP4F16 Inhibit GSE100888 up MAFF Inhibit GSE100888 up EIF4E1B Inhibit GSE100888 up TRAF7 Inhibit GSE100888 up LCN2 Inhibit GSE100888 up IARS Inhibit GSE100888 up TPP1 Inhibit GSE100888 up MAP3K15 Inhibit GSE100888 up TRIM12C Inhibit GSE100888 up RAB3C Inhibit GSE100888 up GM13212 Inhibit GSE100888 up CSF1R Inhibit GSE100888 up SLC26A3 Inhibit GSE100888 up FAM49A Inhibit GSE100888 up BLM Inhibit GSE100888 up ZFP109 Inhibit GSE100888 up RNF180 Inhibit GSE100888 up ZFP108 Inhibit GSE100888 up EIF4EBP1 Inhibit GSE100888 up SAT1 Inhibit GSE100888 up RIMS3 Inhibit GSE100888 up RIMS2 Inhibit GSE100888 up IPO9 Inhibit GSE100888 up 2210404O09RIK Inhibit GSE100888 up GLIPR1 Inhibit GSE100888 up AMDHD2 Inhibit GSE100888 up 9430020K01RIK Inhibit GSE100888 up SESN3 Inhibit GSE100888 up PLXNA2 Inhibit GSE100888 up PLS1 Inhibit GSE100888 up SRGAP2 Inhibit GSE100888 up TRIM66 Inhibit GSE100888 up SRGAP1 Inhibit GSE100888 up KCNJ5 Inhibit GSE100888 up PPP1R12A Inhibit GSE100888 up ZFP639 Inhibit GSE100888 up GM17825 Inhibit GSE100888 up KCNIP4 Inhibit GSE100888 up ASNS Inhibit GSE100888 up EIF2AK3 Inhibit GSE100888 up 4930503L19RIK Inhibit GSE100888 up PTPN12 Inhibit GSE100888 up 1-Mar Inhibit GSE100888 up RTN4RL1 Inhibit GSE100888 up VMN2R-PS54 Inhibit GSE100888 up SLC26A8 Inhibit GSE100888 up ITGA8 Inhibit GSE100888 up NES Inhibit GSE100888 up LCP2 Inhibit GSE100888 up ALK Inhibit GSE100888 up GM8355 Inhibit GSE100888 up ZFP646 Inhibit GSE100888 up ZFP407 Inhibit GSE100888 up TNKS Inhibit GSE100888 up SNAP23 Inhibit GSE100888 up LMBR1L Inhibit GSE100888 up RASGRF2 Inhibit GSE100888 up OLFR628 Inhibit GSE100888 up CD300LF Inhibit GSE100888 up GM8104 Inhibit GSE100888 up SPAG9 Inhibit GSE100888 up FOXJ3 Inhibit GSE100888 up SIAH1A Inhibit GSE100888 up COBL Inhibit GSE100888 up GM10093 Inhibit GSE100888 up TM6SF1 Inhibit GSE100888 up GM12394 Inhibit GSE100888 up KLF2 Inhibit GSE100888 up PAGR1A Inhibit GSE100888 up APOBR Inhibit GSE100888 up TSPAN18 Inhibit GSE100888 up CCDC66 Inhibit GSE100888 up CSNK1G3 Inhibit GSE100888 up 2610021A01RIK Inhibit GSE100888 up NECTIN3 Inhibit GSE100888 up EIF3C Inhibit GSE100888 up GM7120 Inhibit GSE100888 up FRRS1 Inhibit GSE100888 up SEMA3E Inhibit GSE100888 up CEBPG Inhibit GSE100888 up LRTM2 Inhibit GSE100888 up PPM1J Inhibit GSE100888 up SYNE4 Inhibit GSE100888 up TSPAN11 Inhibit GSE100888 up TMA16 Inhibit GSE100888 up FYB Inhibit GSE100888 up TPRN Inhibit GSE100888 up ITGAX Inhibit GSE100888 up NHS Inhibit GSE100888 up TRIM27 Inhibit GSE100888 up EPHB1 Inhibit GSE100888 up FBXO7 Inhibit GSE100888 up PGM5 Inhibit GSE100888 up ERC2 Inhibit GSE100888 up TRIM28 Inhibit GSE100888 up ATP7B Inhibit GSE100888 up NEO1 Inhibit GSE100888 up ZFP541 Inhibit GSE100888 up VSTM4 Inhibit GSE100888 up PGM1 Inhibit GSE100888 up GM18716 Inhibit GSE100888 up IL1R1 Inhibit GSE100888 up IFRD1 Inhibit GSE100888 up SFMBT2 Inhibit GSE100888 up ACTN1 Inhibit GSE100888 up B430203G13RIK Inhibit GSE100888 up DCLK3 Inhibit GSE100888 up CCAR1 Inhibit GSE100888 up BRE Inhibit GSE100888 up MXRA8 Inhibit GSE100888 up GSAP Inhibit GSE100888 up COL9A3 Inhibit GSE100888 up RIN3 Inhibit GSE100888 up PM20D1 Inhibit GSE100888 up IL2RG Inhibit GSE100888 up CBLB Inhibit GSE100888 up UBE2L6 Inhibit GSE100888 up ARNTL Inhibit GSE100888 up STRIP2 Inhibit GSE100888 up GM6768 Inhibit GSE100888 up PEG10 Inhibit GSE100888 up CHAC1 Inhibit GSE100888 up CPNE4 Inhibit GSE100888 down TRHR Inhibit GSE100888 down STARD4 Inhibit GSE100888 down AP1S1 Inhibit GSE100888 down AHNAK2 Inhibit GSE100888 down L7RN6 Inhibit GSE100888 down RFX2 Inhibit GSE100888 down DKK3 Inhibit GSE100888 down ATG12 Inhibit GSE100888 down PHF5A Inhibit GSE100888 down GRIN3B Inhibit GSE100888 down CD7 Inhibit GSE100888 down RBP4 Inhibit GSE100888 down PSMC5 Inhibit GSE100888 down POLR3G Inhibit GSE100888 down MPPE1 Inhibit GSE100888 down RPL27 Inhibit GSE100888 down POLR3K Inhibit GSE100888 down ASF1B Inhibit GSE100888 down SCX Inhibit GSE100888 down RNASET2A Inhibit GSE100888 down IER5L Inhibit GSE100888 down MT-ND1 Inhibit GSE100888 down ACCS Inhibit GSE100888 down MT-ND2 Inhibit GSE100888 down LSM11 Inhibit GSE100888 down GPR153 Inhibit GSE100888 down SV2B Inhibit GSE100888 down NKX2-2 Inhibit GSE100888 down SNCG Inhibit GSE100888 down AKT2 Inhibit GSE100888 down PIP4K2C Inhibit GSE100888 down RABAC1 Inhibit GSE100888 down S100A10 Inhibit GSE100888 down ST3GAL2 Inhibit GSE100888 down SIGMAR1 Inhibit GSE100888 down H2-D1 Inhibit GSE100888 down ABCA6 Inhibit GSE100888 down MCAM Inhibit GSE100888 down FZD9 Inhibit GSE100888 down BCAN Inhibit GSE100888 down VAMP1 Inhibit GSE100888 down MRVI1 Inhibit GSE100888 down ACSBG1 Inhibit GSE100888 down RLTPR Inhibit GSE100888 down HPN Inhibit GSE100888 down TMEM200B Inhibit GSE100888 down CTBP1 Inhibit GSE100888 down RRP9 Inhibit GSE100888 down MRPL12 Inhibit GSE100888 down TMEM189 Inhibit GSE100888 down ALKBH3 Inhibit GSE100888 down DSTYK Inhibit GSE100888 down PCDHA1 Inhibit GSE100888 down PDGFD Inhibit GSE100888 down ARPIN Inhibit GSE100888 down GM10109 Inhibit GSE100888 down ATG7 Inhibit GSE100888 down MNX1 Inhibit GSE100888 down CENPU Inhibit GSE100888 down C730034F03RIK Inhibit GSE100888 down GM15801 Inhibit GSE100888 down ANXA6 Inhibit GSE100888 down TESC Inhibit GSE100888 down PTCH1 Inhibit GSE100888 down TMC6 Inhibit GSE100888 down PRSS12 Inhibit GSE100888 down PLXDC1 Inhibit GSE100888 down TOMM40L Inhibit GSE100888 down MMP15 Inhibit GSE100888 down GPRC5B Inhibit GSE100888 down MMP17 Inhibit GSE100888 down TMEM35 Inhibit GSE100888 down BHLHE41 Inhibit GSE100888 down FXYD7 Inhibit GSE100888 down CCDC3 Inhibit GSE100888 down GAS6 Inhibit GSE100888 down GSTM6 Inhibit GSE100888 down D10JHU81E Inhibit GSE100888 down ARF5 Inhibit GSE100888 down KCNC4 Inhibit GSE100888 down FPR2 Inhibit GSE100888 down TMEM160 Inhibit GSE100888 down GPT Inhibit GSE100888 down OAZ1 Inhibit GSE100888 down LRSAM1 Inhibit GSE100888 down AU041133 Inhibit GSE100888 down RFK Inhibit GSE100888 down NELFCD Inhibit GSE100888 down PACSIN3 Inhibit GSE100888 down RNF113A2 Inhibit GSE100888 down SLC18A3 Inhibit GSE100888 down IL11RA1 Inhibit GSE100888 down GM10131 Inhibit GSE100888 down WDR18 Inhibit GSE100888 down DFFA Inhibit GSE100888 down GM10012 Inhibit GSE100888 down LDOC1 Inhibit GSE100888 down MRPL49 Inhibit GSE100888 down GTF2H3 Inhibit GSE100888 down NFIA Inhibit GSE100888 down DYNLL2 Inhibit GSE100888 down SNX21 Inhibit GSE100888 down HEYL Inhibit GSE100888 down TOM1L2 Inhibit GSE100888 down ADAM19 Inhibit GSE100888 down GATM Inhibit GSE100888 down BDH1 Inhibit GSE100888 down MORN4 Inhibit GSE100888 down CACTIN Inhibit GSE100888 down LGR6 Inhibit GSE100888 down XXYLT1 Inhibit GSE100888 down NDUFA13 Inhibit GSE100888 down IL1F9 Inhibit GSE100888 down TDRP Inhibit GSE100888 down FSTL1 Inhibit GSE100888 down MRPL57 Inhibit GSE100888 down GLI1 Inhibit GSE100888 down TDG-PS Inhibit GSE100888 down RECQL5 Inhibit GSE100888 down LFNG Inhibit GSE100888 down MRC2 Inhibit GSE100888 down NEFL Inhibit GSE100888 down NEFM Inhibit GSE100888 down RSPO2 Inhibit GSE100888 down AP3S2 Inhibit GSE100888 down NUDT17 Inhibit GSE100888 down NEFH Inhibit GSE100888 down BRD8 Inhibit GSE100888 down JAK1 Inhibit GSE100888 down GM9531 Inhibit GSE100888 down YIPF2 Inhibit GSE100888 down GM10036 Inhibit GSE100888 down FBXO17 Inhibit GSE100888 down PPP1R16A Inhibit GSE100888 down BTBD6 Inhibit GSE100888 down TLE6 Inhibit GSE100888 down RAB34 Inhibit GSE100888 down AAGAB Inhibit GSE100888 down TTC30B Inhibit GSE100888 down MAPKAPK3 Inhibit GSE100888 down TUBGCP5 Inhibit GSE100888 down RNF187 Inhibit GSE100888 down KCNG1 Inhibit GSE100888 down ZFP568 Inhibit GSE100888 down KCNG4 Inhibit GSE100888 down FAAP20 Inhibit GSE100888 down CHPF Inhibit GSE100888 down URM1 Inhibit GSE100888 down ANKRD35 Inhibit GSE100888 down LRRC73 Inhibit GSE100888 down PARK7 Inhibit GSE100888 down CXCL14 Inhibit GSE100888 down HARS Inhibit GSE100888 down SLC26A10 Inhibit GSE100888 down CHP1 Inhibit GSE100888 down KCNH2 Inhibit GSE100888 down IGFBP2 Inhibit GSE100888 down GM8783 Inhibit GSE100888 down LRRC49 Inhibit GSE100888 down ESRRA Inhibit GSE100888 down SLMO2 Inhibit GSE100888 down GLMP Inhibit GSE100888 down METRN Inhibit GSE100888 down KCNAB2 Inhibit GSE100888 down ADAP1 Inhibit GSE100888 down MED29 Inhibit GSE100888 down ARMCX2 Inhibit GSE100888 down SH3BP5L Inhibit GSE100888 down TMIE Inhibit GSE100888 down FRMD8 Inhibit GSE100888 down LHX4 Inhibit GSE100888 down ARPC4 Inhibit GSE100888 down GM14419 Inhibit GSE100888 down ERG Inhibit GSE100888 down PGP Inhibit GSE100888 down SPIRE2 Inhibit GSE100888 down GM9864 Inhibit GSE100888 down PIN1 Inhibit GSE100888 down 1700088E04RIK Inhibit GSE100888 down PARM1 Inhibit GSE100888 down ARHGAP9 Inhibit GSE100888 down GM14421 Inhibit GSE100888 down CHODL Inhibit GSE100888 down ARL2 Inhibit GSE100888 down LIN7B Inhibit GSE100888 down TM7SF2 Inhibit GSE100888 down HSPBP1 Inhibit GSE100888 down PHF21B Inhibit GSE100888 down C1QTNF5 Inhibit GSE100888 down FGF9 Inhibit GSE100888 down SNN Inhibit GSE100888 down THEM4 Inhibit GSE100888 down B3GALT2 Inhibit GSE100888 down GM9855 Inhibit GSE100888 down SAC3D1 Inhibit GSE100888 down GPX1 Inhibit GSE100888 down GM8122 Inhibit GSE100888 down GPX3 Inhibit GSE100888 down TMEM255B Inhibit GSE100888 down ACTR6 Inhibit GSE100888 down DHPS Inhibit GSE100888 down KCNJ14 Inhibit GSE100888 down ZFP516 Inhibit GSE100888 down NRG1 Inhibit GSE100888 down NDUFC2 Inhibit GSE100888 down TNFRSF21 Inhibit GSE100888 down CD24A Inhibit GSE100888 down SMDT1 Inhibit GSE100888 down LCP1 Inhibit GSE100888 down CCDC74A Inhibit GSE100888 down MCM6 Inhibit GSE100888 down SP8 Inhibit GSE100888 down CD248 Inhibit GSE100888 down SFT2D3 Inhibit GSE100888 down KCNK3 Inhibit GSE100888 down GM14444 Inhibit GSE100888 down L3MBTL4 Inhibit GSE100888 down GM14322 Inhibit GSE100888 down NDUFB6 Inhibit GSE100888 down GLO1 Inhibit GSE100888 down NDUFB4 Inhibit GSE100888 down ITPR3 Inhibit GSE100888 down ATP5K Inhibit GSE100888 down ADRA1D Inhibit GSE100888 down FBXO44 Inhibit GSE100888 down ADRA1A Inhibit GSE100888 down 2700081O15RIK Inhibit GSE100888 down ATP5D Inhibit GSE100888 down ZFP74 Inhibit GSE100888 down 0610012G03RIK Inhibit GSE100888 down CCDC85B Inhibit GSE100888 down HIF1AN Inhibit GSE100888 down SLC37A4 Inhibit GSE100888 down MBOAT7 Inhibit GSE100888 down NDUFA3 Inhibit GSE100888 down TPD52L1 Inhibit GSE100888 down TSPAN17 Inhibit GSE100888 down NELL2 Inhibit GSE100888 down P2RX6 Inhibit GSE100888 down IMPDH1 Inhibit GSE100888 down BOLA3 Inhibit GSE100888 down A930033H14RIK Inhibit GSE100888 down CSNK1G2 Inhibit GSE100888 down KCTD17 Inhibit GSE100888 down GM12166 Inhibit GSE100888 down SEMA3A Inhibit GSE100888 down ZFP787 Inhibit GSE100888 down GM9780 Inhibit GSE100888 down MCM9 Inhibit GSE100888 down CHADL Inhibit GSE100888 down CACNG2 Inhibit GSE100888 down GM7233 Inhibit GSE100888 down TNNI1 Inhibit GSE100888 down TTC39A Inhibit GSE100888 down ENTPD3 Inhibit GSE100888 down ARL16 Inhibit GSE100888 down IFITM10 Inhibit GSE100888 down FBXO2 Inhibit GSE100888 down ZFP839 Inhibit GSE100888 down P3H4 Inhibit GSE100888 down GCAT Inhibit GSE100888 down DCLK1 Inhibit GSE100888 down FNDC4 Inhibit GSE100888 down IFI27 Inhibit GSE100888 down KIF20A Inhibit GSE100888 down LRRN2 Inhibit GSE100888 down PFN1 Inhibit GSE100888 down CALM1 Inhibit GSE100888 down EIF5A2 Inhibit GSE100888 down VIPR2 Inhibit GSE100888 down ISOC2A Inhibit GSE100888 down UQCR11 Inhibit GSE100888 down CYB5D2 Inhibit GSE100888 down FRAT1 Inhibit GSE100888 down CDC23 Inhibit GSE100888 down ARFIP2 Inhibit GSE100888 down TCEB2 Inhibit GSE100888 down POF1B Inhibit GSE100888 down MEST Inhibit GSE100888 down CALN1 Inhibit GSE100888 down SH3BGR Inhibit GSE100888 down COX8A Inhibit GSE100888 down EAF1 Inhibit GSE100888 down PAQR4 Inhibit GSE100888 down ARFGAP2 Inhibit GSE100888 down IL17RC Inhibit GSE100888 down GM14494 Inhibit GSE100888 down NTAN1 Inhibit GSE100888 down BTC Inhibit GSE100888 down NLRP5-PS Inhibit GSE100888 down RP23-253I14.4 Inhibit GSE100888 down MON1A Inhibit GSE100888 down TAGLN3 Inhibit GSE100888 down NDUFAF1 Inhibit GSE100888 down ITM2A Inhibit GSE100888 down VGLL3 Inhibit GSE100888 down C2CD2L Inhibit GSE100888 down PTGES Inhibit GSE100888 down MON1B Inhibit GSE100888 down VGLL4 Inhibit -------------------------------------------------------------------------------- /Data/biojupies_genes3.tsv: -------------------------------------------------------------------------------- 1 | Accession Up/Down Gene Effect 2 | GSE72901 up WSB1 Activate 3 | GSE72901 up GLCE Activate 4 | GSE72901 up COMTD1 Activate 5 | GSE72901 up GTPBP2 Activate 6 | GSE72901 up ATG14 Activate 7 | GSE72901 up ATG13 Activate 8 | GSE72901 up ATG12 Activate 9 | GSE72901 up GTPBP4 Activate 10 | GSE72901 up ZFYVE19 Activate 11 | GSE72901 up IFT88 Activate 12 | GSE72901 up MTHFD2 Activate 13 | GSE72901 up TBPL1 Activate 14 | GSE72901 up ACOT2 Activate 15 | GSE72901 up GM10557 Activate 16 | GSE72901 up ZSCAN26 Activate 17 | GSE72901 up DUS3L Activate 18 | GSE72901 up CPEB4 Activate 19 | GSE72901 up ATF3 Activate 20 | GSE72901 up AP5Z1 Activate 21 | GSE72901 up IFT172 Activate 22 | GSE72901 up RPL12 Activate 23 | GSE72901 up GHITM Activate 24 | GSE72901 up PTPDC1 Activate 25 | GSE72901 up NRADD Activate 26 | GSE72901 up ACCS Activate 27 | GSE72901 up NXF1 Activate 28 | GSE72901 up KRTCAP2 Activate 29 | GSE72901 up FBXL20 Activate 30 | GSE72901 up TMEM68 Activate 31 | GSE72901 up LUC7L Activate 32 | GSE72901 up VPS11 Activate 33 | GSE72901 up ABCB1B Activate 34 | GSE72901 up ARL14EP Activate 35 | GSE72901 up KLF11 Activate 36 | GSE72901 up TSPYL4 Activate 37 | GSE72901 up GABARAPL1 Activate 38 | GSE72901 up EDEM1 Activate 39 | GSE72901 up MTHFR Activate 40 | GSE72901 up TMEM192 Activate 41 | GSE72901 up NR1D2 Activate 42 | GSE72901 up KLF15 Activate 43 | GSE72901 up EIF1 Activate 44 | GSE72901 up DHFR Activate 45 | GSE72901 up EIF5 Activate 46 | GSE72901 up SLC6A9 Activate 47 | GSE72901 up VAMP1 Activate 48 | GSE72901 up HYOU1 Activate 49 | GSE72901 up ATF6 Activate 50 | GSE72901 up ATF4 Activate 51 | GSE72901 up FERMT3 Activate 52 | GSE72901 up ATF5 Activate 53 | GSE72901 up RPL3 Activate 54 | GSE72901 up ANAPC16 Activate 55 | GSE72901 up RSPH10B Activate 56 | GSE72901 up EPRS Activate 57 | GSE72901 up ADH7 Activate 58 | GSE72901 up WDR45 Activate 59 | GSE72901 up NUB1 Activate 60 | GSE72901 up ALKBH6 Activate 61 | GSE72901 up FAM122A Activate 62 | GSE72901 up RNF215 Activate 63 | GSE72901 up HMOX1 Activate 64 | GSE72901 up SFN Activate 65 | GSE72901 up AMZ1 Activate 66 | GSE72901 up TRP53INP1 Activate 67 | GSE72901 up CYB5R1 Activate 68 | GSE72901 up CDK5RAP3 Activate 69 | GSE72901 up SDF2L1 Activate 70 | GSE72901 up TRMT10B Activate 71 | GSE72901 up CHKA Activate 72 | GSE72901 up NSUN3 Activate 73 | GSE72901 up MFAP1B Activate 74 | GSE72901 up H13 Activate 75 | GSE72901 up LYRM9 Activate 76 | GSE72901 up CARD6 Activate 77 | GSE72901 up CDC6 Activate 78 | GSE72901 up SIRT1 Activate 79 | GSE72901 up TRMT1 Activate 80 | GSE72901 up GLUD1 Activate 81 | GSE72901 up SLC7A5 Activate 82 | GSE72901 up CRLF1 Activate 83 | GSE72901 up TADA2A Activate 84 | GSE72901 up ADI1 Activate 85 | GSE72901 up FXYD5 Activate 86 | GSE72901 up PQLC2 Activate 87 | GSE72901 up PIGB Activate 88 | GSE72901 up CCDC9 Activate 89 | GSE72901 up GM4952 Activate 90 | GSE72901 up CEP44 Activate 91 | GSE72901 up GRAMD1B Activate 92 | GSE72901 up SEL1L Activate 93 | GSE72901 up SLC7A1 Activate 94 | GSE72901 up SLC7A3 Activate 95 | GSE72901 up EXTL1 Activate 96 | GSE72901 up RAD51AP1 Activate 97 | GSE72901 up D6ERTD527E Activate 98 | GSE72901 up TCP11L2 Activate 99 | GSE72901 up TK2 Activate 100 | GSE72901 up GPRASP1 Activate 101 | GSE72901 up ZFP367 Activate 102 | GSE72901 up LIN52 Activate 103 | GSE72901 up PCMTD2 Activate 104 | GSE72901 up MEF2B Activate 105 | GSE72901 up ELOVL3 Activate 106 | GSE72901 up SYVN1 Activate 107 | GSE72901 up ADAT1 Activate 108 | GSE72901 up GTF2H1 Activate 109 | GSE72901 up ELP3 Activate 110 | GSE72901 up TCAIM Activate 111 | GSE72901 up TOM1L2 Activate 112 | GSE72901 up PTRH1 Activate 113 | GSE72901 up ANGPTL6 Activate 114 | GSE72901 up TIMELESS Activate 115 | GSE72901 up SETD6 Activate 116 | GSE72901 up CDKN1A Activate 117 | GSE72901 up PIGO Activate 118 | GSE72901 up EFCAB8 Activate 119 | GSE72901 up CCNDBP1 Activate 120 | GSE72901 up ERO1L Activate 121 | GSE72901 up PTGS2 Activate 122 | GSE72901 up RECQL4 Activate 123 | GSE72901 up ZFYVE27 Activate 124 | GSE72901 up ING3 Activate 125 | GSE72901 up ARFRP1 Activate 126 | GSE72901 up ING4 Activate 127 | GSE72901 up GPNMB Activate 128 | GSE72901 up PCGF1 Activate 129 | GSE72901 up ANXA8 Activate 130 | GSE72901 up ZFP383 Activate 131 | GSE72901 up SLC17A5 Activate 132 | GSE72901 up CSGALNACT2 Activate 133 | GSE72901 up ATHL1 Activate 134 | GSE72901 up YIPF2 Activate 135 | GSE72901 up YIPF3 Activate 136 | GSE72901 up 1600002H07RIK Activate 137 | GSE72901 up YIPF4 Activate 138 | GSE72901 up GPT2 Activate 139 | GSE72901 up SARS Activate 140 | GSE72901 up ZBTB10 Activate 141 | GSE72901 up SLC9A8 Activate 142 | GSE72901 up ADM2 Activate 143 | GSE72901 up PDCD4 Activate 144 | GSE72901 up SLC25A33 Activate 145 | GSE72901 up PDCD2 Activate 146 | GSE72901 up SQSTM1 Activate 147 | GSE72901 up ZFP28 Activate 148 | GSE72901 up SLC25A36 Activate 149 | GSE72901 up ALDH1L2 Activate 150 | GSE72901 up GPS2 Activate 151 | GSE72901 up PPP1R15A Activate 152 | GSE72901 up FAM117A Activate 153 | GSE72901 up FAM129A Activate 154 | GSE72901 up RCHY1 Activate 155 | GSE72901 up HSP90B1 Activate 156 | GSE72901 up GGA2 Activate 157 | GSE72901 up DDRGK1 Activate 158 | GSE72901 up TUBB3 Activate 159 | GSE72901 up TGFBR3L Activate 160 | GSE72901 up RAB24 Activate 161 | GSE72901 up SLC25A42 Activate 162 | GSE72901 up CIR1 Activate 163 | GSE72901 up SLC26A11 Activate 164 | GSE72901 up GM6483 Activate 165 | GSE72901 up CERS6 Activate 166 | GSE72901 up WFS1 Activate 167 | GSE72901 up GOT1 Activate 168 | GSE72901 up DYRK1B Activate 169 | GSE72901 up LRRC45 Activate 170 | GSE72901 up CYP4F13 Activate 171 | GSE72901 up IBTK Activate 172 | GSE72901 up AMD-PS3 Activate 173 | GSE72901 up METTL22 Activate 174 | GSE72901 up GM9625 Activate 175 | GSE72901 up IARS Activate 176 | GSE72901 up RNASEH2A Activate 177 | GSE72901 up RNF166 Activate 178 | GSE72901 up CEP104 Activate 179 | GSE72901 up ZFP346 Activate 180 | GSE72901 up CALCOCO1 Activate 181 | GSE72901 up ANKRD12 Activate 182 | GSE72901 up FAM13B Activate 183 | GSE72901 up HID1 Activate 184 | GSE72901 up RORA Activate 185 | GSE72901 up SAT2 Activate 186 | GSE72901 up ZFP57 Activate 187 | GSE72901 up APMAP Activate 188 | GSE72901 up AMDHD2 Activate 189 | GSE72901 up SESN2 Activate 190 | GSE72901 up THEM4 Activate 191 | GSE72901 up TOM1 Activate 192 | GSE72901 up SLC38A7 Activate 193 | GSE72901 up SH2D6 Activate 194 | GSE72901 up 4833420G17RIK Activate 195 | GSE72901 up TRIT1 Activate 196 | GSE72901 up GM12258 Activate 197 | GSE72901 up LANCL1 Activate 198 | GSE72901 up ASNS Activate 199 | GSE72901 up SLC4A11 Activate 200 | GSE72901 up WIPI2 Activate 201 | GSE72901 up 8-Mar Activate 202 | GSE72901 up HAX1 Activate 203 | GSE72901 up DNAJC3 Activate 204 | GSE72901 up RRM2B Activate 205 | GSE72901 up SYF2 Activate 206 | GSE72901 up MTFR1 Activate 207 | GSE72901 up PIK3C3 Activate 208 | GSE72901 up SERINC3 Activate 209 | GSE72901 up GM8113 Activate 210 | GSE72901 up WHAMM Activate 211 | GSE72901 up SHMT2 Activate 212 | GSE72901 up CELF3 Activate 213 | GSE72901 up SHMT1 Activate 214 | GSE72901 up MCM10 Activate 215 | GSE72901 up PTPN22 Activate 216 | GSE72901 up TARS Activate 217 | GSE72901 up PTPN23 Activate 218 | GSE72901 up UBR2 Activate 219 | GSE72901 up SPATA5 Activate 220 | GSE72901 up KDSR Activate 221 | GSE72901 up GM21092 Activate 222 | GSE72901 up GYG Activate 223 | GSE72901 up VPS51 Activate 224 | GSE72901 up TMEM181B-PS Activate 225 | GSE72901 up DNAJB9 Activate 226 | GSE72901 up AC149090.1 Activate 227 | GSE72901 up IP6K1 Activate 228 | GSE72901 up ACP2 Activate 229 | GSE72901 up FNIP1 Activate 230 | GSE72901 up OVGP1 Activate 231 | GSE72901 up CCDC57 Activate 232 | GSE72901 up CEP131 Activate 233 | GSE72901 up ZFP93 Activate 234 | GSE72901 up NAGA Activate 235 | GSE72901 up KATNA1 Activate 236 | GSE72901 up MCOLN1 Activate 237 | GSE72901 up KLF2 Activate 238 | GSE72901 up RAD52 Activate 239 | GSE72901 up IMPDH2 Activate 240 | GSE72901 up APOBR Activate 241 | GSE72901 up QTRT1 Activate 242 | GSE72901 up DNAJA3 Activate 243 | GSE72901 up BC024978 Activate 244 | GSE72901 up DTL Activate 245 | GSE72901 up EIF3C Activate 246 | GSE72901 up ADPGK Activate 247 | GSE72901 up AKAP8L Activate 248 | GSE72901 up AMBRA1 Activate 249 | GSE72901 up PRIMPOL Activate 250 | GSE72901 up TMA16 Activate 251 | GSE72901 up SRR Activate 252 | GSE72901 up ZFP97 Activate 253 | GSE72901 up PGM3 Activate 254 | GSE72901 up SEC11C Activate 255 | GSE72901 up ZKSCAN17 Activate 256 | GSE72901 up CNNM4 Activate 257 | GSE72901 up ZKSCAN14 Activate 258 | GSE72901 up TRIM23 Activate 259 | GSE72901 up VPS39 Activate 260 | GSE72901 up ZFP956 Activate 261 | GSE72901 up CTNS Activate 262 | GSE72901 up MAPK8IP3 Activate 263 | GSE72901 up MFSD11 Activate 264 | GSE72901 up SOAT2 Activate 265 | GSE72901 up RRAGC Activate 266 | GSE72901 up 6330416G13RIK Activate 267 | GSE72901 up CTH Activate 268 | GSE72901 up 1810032O08RIK Activate 269 | GSE72901 up EPHA4 Activate 270 | GSE72901 up STX16 Activate 271 | GSE72901 up TAGLN Activate 272 | GSE72901 up SLC23A2 Activate 273 | GSE72901 up SLC35B1 Activate 274 | GSE72901 up MRM1 Activate 275 | GSE72901 up CDKN2AIP Activate 276 | GSE72901 up 6820431F20RIK Activate 277 | GSE72901 up EXOSC5 Activate 278 | GSE72901 up CHEK1 Activate 279 | GSE72901 up E2F1 Activate 280 | GSE72901 up MTHFD1L Activate 281 | GSE72901 up CHAC1 Activate 282 | GSE72901 up CPNE1 Activate 283 | GSE72901 up CCNL2 Activate 284 | GSE72901 up ZFP960 Activate 285 | GSE72901 up LONP1 Activate 286 | GSE72901 up INSR Activate 287 | GSE72901 up XBP1 Activate 288 | GSE72901 up GADD45A Activate 289 | GSE72901 up BROX Activate 290 | GSE72901 up RAB39B Activate 291 | GSE72901 up MANF Activate 292 | GSE72901 up STAM Activate 293 | GSE72901 up TFB2M Activate 294 | GSE72901 up ALG2 Activate 295 | GSE72901 up ANK2 Activate 296 | GSE72901 up INPP4A Activate 297 | GSE72901 up ADCK3 Activate 298 | GSE72901 up FBXL2 Activate 299 | GSE72901 up ADCK5 Activate 300 | GSE72901 up FBXL3 Activate 301 | GSE72901 up SUGP1 Activate 302 | GSE72901 down GBP7 Activate 303 | GSE72901 down A430105I19RIK Activate 304 | GSE72901 down CADM1 Activate 305 | GSE72901 down SOX12 Activate 306 | GSE72901 down SOX11 Activate 307 | GSE72901 down SLC5A7 Activate 308 | GSE72901 down COL1A2 Activate 309 | GSE72901 down MEX3A Activate 310 | GSE72901 down MYL6 Activate 311 | GSE72901 down MARCKS Activate 312 | GSE72901 down CD9 Activate 313 | GSE72901 down IGTP Activate 314 | GSE72901 down SF3B3 Activate 315 | GSE72901 down AHNAK Activate 316 | GSE72901 down SERPINE1 Activate 317 | GSE72901 down MT-ND3 Activate 318 | GSE72901 down DCAF6 Activate 319 | GSE72901 down BACH2 Activate 320 | GSE72901 down CREB3L1 Activate 321 | GSE72901 down ST3GAL5 Activate 322 | GSE72901 down IGLON5 Activate 323 | GSE72901 down PXDC1 Activate 324 | GSE72901 down S100A13 Activate 325 | GSE72901 down CYP1B1 Activate 326 | GSE72901 down SAMD1 Activate 327 | GSE72901 down HES1 Activate 328 | GSE72901 down S100A10 Activate 329 | GSE72901 down GBP3 Activate 330 | GSE72901 down ST3GAL2 Activate 331 | GSE72901 down S100A11 Activate 332 | GSE72901 down FZD2 Activate 333 | GSE72901 down WNT10B Activate 334 | GSE72901 down KLF13 Activate 335 | GSE72901 down PLK1 Activate 336 | GSE72901 down MCAM Activate 337 | GSE72901 down PLK2 Activate 338 | GSE72901 down KLF10 Activate 339 | GSE72901 down BAZ1A Activate 340 | GSE72901 down NR2F6 Activate 341 | GSE72901 down PBX1 Activate 342 | GSE72901 down FOSL2 Activate 343 | GSE72901 down EHD2 Activate 344 | GSE72901 down FOSL1 Activate 345 | GSE72901 down GJB3 Activate 346 | GSE72901 down CDCA3 Activate 347 | GSE72901 down TTYH3 Activate 348 | GSE72901 down TTYH2 Activate 349 | GSE72901 down SCHIP1 Activate 350 | GSE72901 down MRPL18 Activate 351 | GSE72901 down ENO3 Activate 352 | GSE72901 down GVIN1 Activate 353 | GSE72901 down HACD4 Activate 354 | GSE72901 down ELK3 Activate 355 | GSE72901 down LIPG Activate 356 | GSE72901 down RNF213 Activate 357 | GSE72901 down HSPH1 Activate 358 | GSE72901 down PRKAR2B Activate 359 | GSE72901 down PRKAR2A Activate 360 | GSE72901 down PRDX1 Activate 361 | GSE72901 down IER5 Activate 362 | GSE72901 down DUSP5 Activate 363 | GSE72901 down GSTM1 Activate 364 | GSE72901 down TPI1 Activate 365 | GSE72901 down ANXA3 Activate 366 | GSE72901 down PTCH1 Activate 367 | GSE72901 down TUBB2A Activate 368 | GSE72901 down CENPE Activate 369 | GSE72901 down CENPF Activate 370 | GSE72901 down KAT2B Activate 371 | GSE72901 down MMP14 Activate 372 | GSE72901 down PXDN Activate 373 | GSE72901 down GAS1 Activate 374 | GSE72901 down ADGRL1 Activate 375 | GSE72901 down ADGRL2 Activate 376 | GSE72901 down PHF19 Activate 377 | GSE72901 down PIF1 Activate 378 | GSE72901 down HIST2H2AA2 Activate 379 | GSE72901 down FAM171A2 Activate 380 | GSE72901 down SPTA1 Activate 381 | GSE72901 down LDHA Activate 382 | GSE72901 down CASP12 Activate 383 | GSE72901 down TIMP3 Activate 384 | GSE72901 down RNF150 Activate 385 | GSE72901 down TK1 Activate 386 | GSE72901 down TIMP1 Activate 387 | GSE72901 down TIMP2 Activate 388 | GSE72901 down EGLN1 Activate 389 | GSE72901 down ATRNL1 Activate 390 | GSE72901 down DYNLL1 Activate 391 | GSE72901 down STAT1 Activate 392 | GSE72901 down PGAM1 Activate 393 | GSE72901 down ELOVL6 Activate 394 | GSE72901 down CDKN2B Activate 395 | GSE72901 down TUBB4B Activate 396 | GSE72901 down NFIB Activate 397 | GSE72901 down NFIC Activate 398 | GSE72901 down SLC39A10 Activate 399 | GSE72901 down ETNK1 Activate 400 | GSE72901 down HYLS1 Activate 401 | GSE72901 down CKS2 Activate 402 | GSE72901 down LGR6 Activate 403 | GSE72901 down ANGPTL2 Activate 404 | GSE72901 down GM45234 Activate 405 | GSE72901 down PRSS23 Activate 406 | GSE72901 down TUBA1A Activate 407 | GSE72901 down CENPA Activate 408 | GSE72901 down LFNG Activate 409 | GSE72901 down IFIH1 Activate 410 | GSE72901 down TMSB4X Activate 411 | GSE72901 down NDST1 Activate 412 | GSE72901 down TUBA1C Activate 413 | GSE72901 down TUBA1B Activate 414 | GSE72901 down OLFML3 Activate 415 | GSE72901 down SMCHD1 Activate 416 | GSE72901 down NUF2 Activate 417 | GSE72901 down GCNT4 Activate 418 | GSE72901 down GATSL2 Activate 419 | GSE72901 down TNKS1BP1 Activate 420 | GSE72901 down FADS2 Activate 421 | GSE72901 down GSN Activate 422 | GSE72901 down PHLDA1 Activate 423 | GSE72901 down SLC39A1 Activate 424 | GSE72901 down TLE3 Activate 425 | GSE72901 down PRRX1 Activate 426 | GSE72901 down SKIDA1 Activate 427 | GSE72901 down CYP51 Activate 428 | GSE72901 down CDC25B Activate 429 | GSE72901 down TUBA4A Activate 430 | GSE72901 down CXCL10 Activate 431 | GSE72901 down CNOT6 Activate 432 | GSE72901 down SLC9A5 Activate 433 | GSE72901 down CXCL12 Activate 434 | GSE72901 down STIM2 Activate 435 | GSE72901 down LY6A Activate 436 | GSE72901 down LY6E Activate 437 | GSE72901 down PHIP Activate 438 | GSE72901 down S100A4 Activate 439 | GSE72901 down NPTXR Activate 440 | GSE72901 down DHCR7 Activate 441 | GSE72901 down FIGF Activate 442 | GSE72901 down PLXND1 Activate 443 | GSE72901 down CSF1 Activate 444 | GSE72901 down FAM129B Activate 445 | GSE72901 down HR Activate 446 | GSE72901 down ATN1 Activate 447 | GSE72901 down ZBTB20 Activate 448 | GSE72901 down FGD3 Activate 449 | GSE72901 down CTGF Activate 450 | GSE72901 down TUBB6 Activate 451 | GSE72901 down RBBP6 Activate 452 | GSE72901 down HAS2 Activate 453 | GSE72901 down SH3BP4 Activate 454 | GSE72901 down GRB14 Activate 455 | GSE72901 down NACC2 Activate 456 | GSE72901 down KMT5A Activate 457 | GSE72901 down TPM1 Activate 458 | GSE72901 down LDLR Activate 459 | GSE72901 down KPNA2 Activate 460 | GSE72901 down MAP2K3 Activate 461 | GSE72901 down IGSF10 Activate 462 | GSE72901 down SMO Activate 463 | GSE72901 down FSCN1 Activate 464 | GSE72901 down XAF1 Activate 465 | GSE72901 down MAP3K14 Activate 466 | GSE72901 down EIF4G3 Activate 467 | GSE72901 down LHX9 Activate 468 | GSE72901 down PFKFB3 Activate 469 | GSE72901 down ZFP467 Activate 470 | GSE72901 down IRS1 Activate 471 | GSE72901 down CD151 Activate 472 | GSE72901 down MAZ Activate 473 | GSE72901 down OLFML2B Activate 474 | GSE72901 down WISP1 Activate 475 | GSE72901 down NHSL1 Activate 476 | GSE72901 down EFEMP1 Activate 477 | GSE72901 down FGF7 Activate 478 | GSE72901 down G3BP2 Activate 479 | GSE72901 down THEM6 Activate 480 | GSE72901 down ZFP462 Activate 481 | GSE72901 down IL13RA1 Activate 482 | GSE72901 down FUS Activate 483 | GSE72901 down ITGA5 Activate 484 | GSE72901 down HMGCS1 Activate 485 | GSE72901 down EIF2AK2 Activate 486 | GSE72901 down ITGA3 Activate 487 | GSE72901 down DHCR24 Activate 488 | GSE72901 down MSL1 Activate 489 | GSE72901 down CD24A Activate 490 | GSE72901 down DAB2 Activate 491 | GSE72901 down CDK6 Activate 492 | GSE72901 down OGN Activate 493 | GSE72901 down MFAP2 Activate 494 | GSE72901 down BCL3 Activate 495 | GSE72901 down CDK1 Activate 496 | GSE72901 down BCL2 Activate 497 | GSE72901 down NES Activate 498 | GSE72901 down SPACA6 Activate 499 | GSE72901 down CD248 Activate 500 | GSE72901 down TNRC6A Activate 501 | GSE72901 down BCAR1 Activate 502 | GSE72901 down DAGLA Activate 503 | GSE72901 down NLGN2 Activate 504 | GSE72901 down FBLIM1 Activate 505 | GSE72901 down LRRK1 Activate 506 | GSE72901 down AMD1 Activate 507 | GSE72901 down HMMR Activate 508 | GSE72901 down NREP Activate 509 | GSE72901 down ADRA1D Activate 510 | GSE72901 down MLLT3 Activate 511 | GSE72901 down DUSP14 Activate 512 | GSE72901 down CYR61 Activate 513 | GSE72901 down DUSP11 Activate 514 | GSE72901 down EMILIN2 Activate 515 | GSE72901 down EMILIN1 Activate 516 | GSE72901 down MCL1 Activate 517 | GSE72901 down PRKG2 Activate 518 | GSE72901 down PLEKHG2 Activate 519 | GSE72901 down PRC1 Activate 520 | GSE72901 down KPNB1 Activate 521 | GSE72901 down TXNIP Activate 522 | GSE72901 down MNDA Activate 523 | GSE72901 down MET Activate 524 | GSE72901 down SLC25A12 Activate 525 | GSE72901 down SEMA3A Activate 526 | GSE72901 down APOL9B Activate 527 | GSE72901 down WDR1 Activate 528 | GSE72901 down APOL9A Activate 529 | GSE72901 down TRIM30D Activate 530 | GSE72901 down DYSF Activate 531 | GSE72901 down SEMA3F Activate 532 | GSE72901 down PPM1L Activate 533 | GSE72901 down HDAC7 Activate 534 | GSE72901 down ADAMTS5 Activate 535 | GSE72901 down ADAMTS4 Activate 536 | GSE72901 down ADAMTS1 Activate 537 | GSE72901 down ARRB1 Activate 538 | GSE72901 down ADAMTS2 Activate 539 | GSE72901 down CCL7 Activate 540 | GSE72901 down DHX58 Activate 541 | GSE72901 down ITGB8 Activate 542 | GSE72901 down CCL2 Activate 543 | GSE72901 down BAK1 Activate 544 | GSE72901 down SLC25A24 Activate 545 | GSE72901 down IL1R1 Activate 546 | GSE72901 down MYO7A Activate 547 | GSE72901 down P3H4 Activate 548 | GSE72901 down APLN Activate 549 | GSE72901 down CDC20 Activate 550 | GSE72901 down RUNX2 Activate 551 | GSE72901 down TM4SF1 Activate 552 | GSE72901 down ST5 Activate 553 | GSE72901 down CCDC80 Activate 554 | GSE72901 down MGP Activate 555 | GSE72901 down KIF20A Activate 556 | GSE72901 down FAM64A Activate 557 | GSE72901 down BCOR Activate 558 | GSE72901 down RIN2 Activate 559 | GSE72901 down RIN3 Activate 560 | GSE72901 down PFN1 Activate 561 | GSE72901 down CALM3 Activate 562 | GSE72901 down IFITM2 Activate 563 | GSE72901 down IFITM3 Activate 564 | GSE72901 down CCNF Activate 565 | GSE72901 down NTN1 Activate 566 | GSE72901 down UBE2L6 Activate 567 | GSE72901 down LY6C1 Activate 568 | GSE72901 down ACTB Activate 569 | GSE72901 down NUAK2 Activate 570 | GSE72901 down ADGRA2 Activate 571 | GSE72901 down PTGFRN Activate 572 | GSE72901 down EGR1 Activate 573 | GSE72901 down OMD Activate 574 | GSE72901 down INTS3 Activate 575 | GSE72901 down GADD45G Activate 576 | GSE72901 down IRGM2 Activate 577 | GSE72901 down RAB27B Activate 578 | GSE72901 down IRGM1 Activate 579 | GSE72901 down ZFP618 Activate 580 | GSE72901 down PARP14 Activate 581 | GSE72901 down PARP12 Activate 582 | GSE72901 down KLHDC8A Activate 583 | GSE72901 down INTS8 Activate 584 | GSE72901 down PLPP3 Activate 585 | GSE72901 down RCOR2 Activate 586 | GSE72901 down PPP1R18 Activate 587 | GSE72901 down ANP32A Activate 588 | GSE72901 down PPL Activate 589 | GSE72901 down IFIT1 Activate 590 | GSE72901 down PCDH18 Activate 591 | GSE72901 down TMPO Activate 592 | GSE72901 down TNS1 Activate 593 | GSE72901 down ZNHIT1 Activate 594 | GSE72901 down TSPAN9 Activate 595 | GSE72901 down ASUN Activate 596 | GSE72901 down PPP1R10 Activate 597 | GSE72901 down HIVEP3 Activate 598 | GSE72901 down LGALS9 Activate 599 | GSE72901 down SYNPO Activate 600 | GSE72901 down OASL2 Activate 601 | GSE72901 down TNS3 Activate -------------------------------------------------------------------------------- /Data/enrichr_predictions.tsv: -------------------------------------------------------------------------------- 1 | Rank Gene Score Genes contributing most to score:similarity score 2 | 1 PGK1P1 1.6117 AMBRA1:3.041;GABARAP:2.9831;GABARAPL2:2.5772;PINK1:2.4212;WIPI1:2.3672;STX17:2.229;ZFYVE1:2.1979;WIPI2:2.1053;PIK3C3:2.015 3 | 2 TRSTGA21 1.5658 GABARAPL2:2.5772;GABARAPL1:2.528;GABARAP:2.4866;STX17:2.229;AMBRA1:2.2064;ZFYVE1:2.1979;PIK3C3:2.015;UVRAG:1.9782;ULK2:1.9555 4 | 3 ZFYVE1 1.3825 ULK1:1.9096;AMBRA1:1.8689;UVRAG:1.7688;STX17:1.7146;PINK1:1.712;PIK3C3:1.7046;WIPI1:1.695;ULK2:1.6903;WDFY3:1.5919 5 | 4 ZRANB1 1.3704 ZFYVE1:1.9066;UVRAG:1.8955;SIRT1:1.823;STX17:1.8226;AMBRA1:1.8121;WIPI2:1.7181;ULK1:1.699;WDFY3:1.6942;PIK3C3:1.6815 6 | 5 TMEM127 1.3658 WIPI2:1.8438;ULK1:1.7794;STX17:1.731;AMBRA1:1.6906;ULK2:1.6145;GABARAPL2:1.5594;GABARAP:1.5581;UVRAG:1.5559;WIPI1:1.5522 7 | 6 RABGAP1 1.3655 STX17:1.9077;UVRAG:1.8855;WDFY3:1.8763;PIK3C3:1.8507;ZFYVE1:1.8405;WIPI2:1.8027;AMBRA1:1.7686;ULK2:1.6608;SIRT1:1.5936 8 | 7 HERPUD2 1.3626 UVRAG:1.8894;ZFYVE1:1.8766;PIK3C3:1.7777;ULK2:1.7646;WIPI2:1.7423;RB1CC1:1.724;AMBRA1:1.6873;WDFY3:1.6848;SIRT1:1.6199 9 | 8 UBAP1 1.3604 ZFYVE1:1.8564;AMBRA1:1.7654;UVRAG:1.7495;STX17:1.716;RB1CC1:1.6781;PIK3C3:1.6462;SIRT1:1.5975;GABARAPL1:1.5517;GABARAPL2:1.5448 10 | 9 FLICR 1.3581 WIPI1:2.434;TFEB:2.2324;PIK3C3:2.0775;STX17:1.8494;VMP1:1.8461;AMBRA1:1.8286;ZFYVE1:1.8208;SIRT1:1.7944;RB1CC1:1.7879 11 | 10 TBC1D20 1.3556 WIPI2:1.8938;UVRAG:1.7674;AMBRA1:1.7424;RB1CC1:1.67;ULK2:1.6463;STX17:1.6455;ULK1:1.6106;PIK3C3:1.5546;SIRT1:1.5516 12 | 11 YIPF4 1.3544 PIK3C3:1.7832;WIPI2:1.7589;ZFYVE1:1.7545;RB1CC1:1.7284;STX17:1.6401;SIRT1:1.6226;UVRAG:1.622;ULK2:1.5539;GABARAP:1.5354 13 | 12 HBP1 1.3525 RB1CC1:1.8118;ULK1:1.6858;GABARAPL1:1.6717;WIPI1:1.6365;WIPI2:1.6358;SIRT1:1.6205;PIK3C3:1.587;PINK1:1.5792;UVRAG:1.5618 14 | 13 GPBP1L1 1.3493 ZFYVE1:1.8574;WIPI2:1.7681;PIK3C3:1.7275;SIRT1:1.7275;STX17:1.697;AMBRA1:1.6883;UVRAG:1.6699;WDFY3:1.5423;ULK1:1.5127 15 | 14 FBXL3 1.3475 SIRT1:1.9549;ZFYVE1:1.8693;PIK3C3:1.7967;ULK2:1.7654;STX17:1.7174;WDFY3:1.6342;UVRAG:1.6228;AMBRA1:1.544;GABARAPL2:1.5089 16 | 15 AMMECR1L 1.3469 ZFYVE1:1.7929;AMBRA1:1.7917;ULK2:1.79;WIPI2:1.7457;STX17:1.7205;UVRAG:1.6686;RB1CC1:1.6469;WDFY3:1.6462;PIK3C3:1.593 17 | 16 FBXL20 1.3462 ULK2:1.9403;RB1CC1:1.7974;ULK1:1.7913;STX17:1.7804;UVRAG:1.6713;WIPI2:1.6602;AMBRA1:1.616;PIK3C3:1.5726;WDFY3:1.5641 18 | 17 UBR2 1.3462 UVRAG:1.865;RB1CC1:1.8613;WDFY3:1.8571;STX17:1.8501;AMBRA1:1.8463;ZFYVE1:1.8215;WIPI2:1.6879;SIRT1:1.6215;ULK1:1.5531 19 | 18 ZER1 1.345 ULK1:2.0144;WIPI2:1.8776;PINK1:1.8365;AMBRA1:1.8107;STX17:1.6647;ULK2:1.6228;WDFY3:1.5611;TFEB:1.5294;PIK3C3:1.5009 20 | 19 RETREG2 1.3445 PINK1:1.8225;ZFYVE1:1.777;ULK1:1.7338;GABARAP:1.7239;RB1CC1:1.5878;GABARAPL2:1.582;AMBRA1:1.5798;ULK2:1.5543;GABARAPL1:1.5493 21 | 20 WDR26 1.341 WIPI2:1.7205;STX17:1.7201;ZFYVE1:1.7157;WDFY3:1.7132;PIK3C3:1.6414;SIRT1:1.6365;AMBRA1:1.6281;UVRAG:1.6005;ULK1:1.541 22 | 21 AKAP10 1.3406 PIK3C3:1.9222;ZFYVE1:1.9202;AMBRA1:1.9003;UVRAG:1.8977;RB1CC1:1.8753;WDFY3:1.7896;ULK2:1.7777;SIRT1:1.7457;WIPI2:1.7107 23 | 22 TBCEL 1.3405 STX17:1.85;PIK3C3:1.7887;WDFY3:1.7599;UVRAG:1.7569;ULK2:1.6534;WIPI2:1.6277;AMBRA1:1.626;RB1CC1:1.5697;ULK1:1.4764 24 | 23 RNF103 1.3398 ULK2:1.703;RB1CC1:1.688;ULK1:1.6578;PINK1:1.647;SIRT1:1.6366;GABARAPL1:1.615;WIPI2:1.5926;WIPI1:1.5692;STX17:1.5566 25 | 24 VPS39 1.3388 WIPI2:1.9143;PIK3C3:1.8044;STX17:1.7215;AMBRA1:1.7015;ULK2:1.6704;UVRAG:1.6308;ULK1:1.6062;WDFY3:1.5713;RB1CC1:1.5587 26 | 25 GGNBP2 1.3387 AMBRA1:1.7766;SIRT1:1.7222;UVRAG:1.699;GABARAPL2:1.6863;GABARAP:1.6807;WIPI2:1.653;ZFYVE1:1.62;VMP1:1.5682;WDFY3:1.5481 27 | 26 STX5 1.3364 WIPI2:1.7691;GABARAP:1.7008;AMBRA1:1.6598;ULK1:1.6303;RB1CC1:1.5626;UVRAG:1.5598;STX17:1.5487;GABARAPL2:1.5337;SQSTM1:1.5232 28 | 27 SOS2 1.3359 RB1CC1:1.8668;STX17:1.8586;ZFYVE1:1.8241;ULK2:1.8044;WDFY3:1.7919;SIRT1:1.7032;UVRAG:1.6888;AMBRA1:1.5514;WIPI2:1.4789 29 | 28 WDR45 1.3355 PINK1:1.8732;WIPI2:1.7898;ULK1:1.6928;GABARAP:1.6912;GABARAPL1:1.6445;PIK3C3:1.6156;GABARAPL2:1.5988;ULK2:1.5418;RB1CC1:1.5308 30 | 29 RAB5B 1.3355 GABARAPL2:1.7121;ULK2:1.6995;WIPI2:1.6783;ULK1:1.6528;GABARAP:1.6175;STX17:1.593;RB1CC1:1.5444;PINK1:1.5387;WDFY3:1.4838 31 | 30 TMUB2 1.3353 WIPI2:1.8714;GABARAP:1.7346;ULK1:1.6751;PINK1:1.6743;STX17:1.573;ULK2:1.5367;TFEB:1.528;UVRAG:1.514;AMBRA1:1.4981 32 | 31 TNKS2 1.3353 RB1CC1:1.8816;WDFY3:1.8518;SIRT1:1.8477;UVRAG:1.757;ULK2:1.7426;PIK3C3:1.6708;AMBRA1:1.6155;ZFYVE1:1.6062;WIPI2:1.4562 33 | 32 TMEM167B 1.3347 GABARAPL2:1.7321;WIPI2:1.6866;PIK3C3:1.595;STX17:1.5932;GABARAP:1.5891;ULK2:1.586;RB1CC1:1.5786;UVRAG:1.575;SIRT1:1.5287 34 | 33 UBE2H 1.3341 WIPI2:1.6911;GABARAPL2:1.6629;RB1CC1:1.6136;WDFY3:1.5741;ULK2:1.5697;PINK1:1.5552;GABARAP:1.5424;ULK1:1.5336;UVRAG:1.5208 35 | 34 PNPLA8 1.3337 ZFYVE1:1.8289;PIK3C3:1.7272;STX17:1.7033;SIRT1:1.6034;GABARAPL1:1.5404;WIPI2:1.5362;WIPI1:1.5275;GABARAPL2:1.5202;PINK1:1.5124 36 | 35 TBC1D15 1.3325 SIRT1:1.8061;WIPI2:1.7394;ZFYVE1:1.6973;PIK3C3:1.6966;STX17:1.6864;UVRAG:1.6167;WDFY3:1.5915;ULK1:1.4969;GABARAPL2:1.4904 37 | 36 VPS11 1.3325 AMBRA1:1.926;PIK3C3:1.7654;UVRAG:1.7186;WIPI2:1.7017;GABARAP:1.6145;ULK1:1.5465;PINK1:1.4951;STX17:1.4725;RB1CC1:1.4633 38 | 37 FBXW11 1.3324 AMBRA1:1.7664;RB1CC1:1.7307;WDFY3:1.729;PIK3C3:1.7092;WIPI2:1.7069;ZFYVE1:1.6735;STX17:1.6405;ULK2:1.6045;SIRT1:1.5919 39 | 38 SHOC2 1.3323 STX17:1.8281;SIRT1:1.8233;PIK3C3:1.766;ZFYVE1:1.7168;UVRAG:1.6873;AMBRA1:1.6749;WDFY3:1.6657;GABARAPL2:1.6114;WIPI2:1.5765 40 | 39 SYF2 1.3322 GABARAP:1.7992;WIPI2:1.7542;RB1CC1:1.7005;ZFYVE1:1.6498;PINK1:1.6478;UVRAG:1.6069;PIK3C3:1.5993;GABARAPL1:1.514;SIRT1:1.5056 41 | 40 SEC24B 1.332 AMBRA1:1.8746;PIK3C3:1.837;WDFY3:1.8132;STX17:1.7659;SIRT1:1.7614;UVRAG:1.7518;ZFYVE1:1.6249;WIPI2:1.6245;ULK2:1.4847 42 | 41 PRDM4 1.3319 ZFYVE1:1.843;SIRT1:1.8247;STX17:1.8087;UVRAG:1.7663;AMBRA1:1.7642;RB1CC1:1.6592;ULK2:1.6378;PIK3C3:1.6157;ULK1:1.5365 43 | 42 SLU7 1.3313 ZFYVE1:1.8216;PIK3C3:1.8203;STX17:1.7834;WIPI2:1.6826;SIRT1:1.6509;AMBRA1:1.6366;UVRAG:1.6215;GABARAPL2:1.5542;VMP1:1.4864 44 | 43 WDTC1 1.3313 PINK1:1.8311;ULK1:1.8119;AMBRA1:1.7397;ULK2:1.683;WIPI2:1.6677;PIK3C3:1.622;TFEB:1.5466;STX17:1.5424;UVRAG:1.4689 45 | 44 RANBP10 1.3308 AMBRA1:1.9556;ULK1:1.8757;WIPI2:1.8379;STX17:1.6606;UVRAG:1.634;ULK2:1.5732;WDFY3:1.532;SIRT1:1.4828;RB1CC1:1.4769 46 | 45 FBXO38 1.3307 PIK3C3:1.9474;STX17:1.9063;AMBRA1:1.8655;RB1CC1:1.7567;WIPI2:1.7483;WDFY3:1.7217;SIRT1:1.6896;UVRAG:1.6492;ULK2:1.5389 47 | 46 ZFAND3 1.3301 ZFYVE1:1.7522;UVRAG:1.7118;WIPI2:1.7002;ULK2:1.6233;TFEB:1.5627;STX17:1.5623;WDFY3:1.5539;PIK3C3:1.544;ULK1:1.538 48 | 47 USP33 1.3296 PIK3C3:1.9089;STX17:1.8323;SIRT1:1.7478;AMBRA1:1.7076;WDFY3:1.7007;ULK2:1.6751;UVRAG:1.6403;WIPI2:1.6222;ZFYVE1:1.5276 49 | 48 ZDHHC17 1.3291 STX17:1.9691;UVRAG:1.8521;PIK3C3:1.8219;WDFY3:1.8105;SIRT1:1.8028;ULK2:1.726;AMBRA1:1.6778;ZFYVE1:1.6454;WIPI2:1.5794 50 | 49 FAM160B1 1.3289 STX17:1.7982;RB1CC1:1.7893;UVRAG:1.7788;PIK3C3:1.6872;WDFY3:1.6648;ULK2:1.6193;SIRT1:1.6042;ULK1:1.5978;AMBRA1:1.5798 51 | 50 ZYG11B 1.3281 STX17:1.8877;ULK2:1.8798;WDFY3:1.794;ZFYVE1:1.7741;AMBRA1:1.6294;SIRT1:1.6141;PIK3C3:1.5875;UVRAG:1.5701;ULK1:1.5544 52 | 51 RANBP9 1.3279 PIK3C3:1.8037;AMBRA1:1.7608;STX17:1.7455;SIRT1:1.6928;UVRAG:1.6841;ZFYVE1:1.619;GABARAPL2:1.6025;WDFY3:1.5748;WIPI2:1.5484 53 | 52 RALGAPB 1.3275 RB1CC1:1.9353;STX17:1.9089;AMBRA1:1.8767;ZFYVE1:1.8386;WIPI2:1.8278;PIK3C3:1.8009;UVRAG:1.7888;ULK2:1.6204;SIRT1:1.5382 54 | 53 SCAF8 1.3274 RB1CC1:1.8807;STX17:1.857;PIK3C3:1.8315;WDFY3:1.826;SIRT1:1.8148;ZFYVE1:1.7907;UVRAG:1.7536;WIPI2:1.64;ULK2:1.4895 55 | 54 RSPRY1 1.3274 RB1CC1:1.7979;ZFYVE1:1.7915;STX17:1.7806;AMBRA1:1.7329;SIRT1:1.7219;UVRAG:1.6699;WIPI2:1.6697;WDFY3:1.5798;ULK2:1.5594 56 | 55 YIPF3 1.3273 ZFYVE1:1.8289;PINK1:1.7933;GABARAPL2:1.7647;WIPI2:1.7625;VMP1:1.5792;SQSTM1:1.5636;ULK1:1.5556;GABARAPL1:1.522;TFEB:1.5128 57 | 56 ZDHHC7 1.3269 GABARAPL2:1.696;ZFYVE1:1.6558;UVRAG:1.6495;ULK1:1.6225;AMBRA1:1.5923;PINK1:1.5871;STX17:1.546;GABARAP:1.5167;TFEB:1.5056 58 | 57 GDAP2 1.3267 PIK3C3:1.8941;UVRAG:1.8365;ZFYVE1:1.7044;RB1CC1:1.6646;AMBRA1:1.6602;WIPI2:1.6122;ULK2:1.6037;VMP1:1.5953;WDFY3:1.5872 59 | 58 GOLGA5 1.3266 RB1CC1:1.8105;ZFYVE1:1.8033;STX17:1.7694;UVRAG:1.6708;AMBRA1:1.5959;WIPI1:1.549;WIPI2:1.5481;SIRT1:1.5138;GABARAPL2:1.5085 60 | 59 SAMD8 1.3264 ZFYVE1:1.8336;ULK2:1.7229;STX17:1.7066;UVRAG:1.6764;WDFY3:1.6578;SIRT1:1.6479;PIK3C3:1.6083;WIPI2:1.4818;AMBRA1:1.4811 61 | 60 TAX1BP1 1.326 GABARAPL2:1.8847;GABARAP:1.7271;PIK3C3:1.6604;WIPI2:1.6246;UVRAG:1.5742;ZFYVE1:1.5685;SQSTM1:1.5587;VMP1:1.4959;WDFY3:1.4617 62 | 61 SPPL3 1.3259 WIPI2:1.8144;UVRAG:1.795;ZFYVE1:1.7619;PIK3C3:1.6962;STX17:1.687;ULK1:1.6377;ULK2:1.6071;WDFY3:1.5694;RB1CC1:1.5297 63 | 62 TTC17 1.3258 UVRAG:1.8104;PIK3C3:1.8034;ZFYVE1:1.7699;STX17:1.7635;AMBRA1:1.7351;WIPI2:1.7173;WDFY3:1.7111;ULK2:1.5803;SIRT1:1.5735 64 | 63 TBC1D23 1.3256 PIK3C3:1.9357;STX17:1.8177;UVRAG:1.7756;ZFYVE1:1.7705;SIRT1:1.6219;WDFY3:1.6061;AMBRA1:1.5439;WIPI2:1.5214;ULK2:1.4839 65 | 64 RNF13 1.3246 UVRAG:1.7299;GABARAPL2:1.7194;STX17:1.6564;GABARAP:1.6543;VMP1:1.6071;PIK3C3:1.6038;PINK1:1.5585;ZFYVE1:1.5292;WDFY3:1.5231 66 | 65 YTHDF3 1.3245 PIK3C3:1.8707;SIRT1:1.7738;STX17:1.7552;AMBRA1:1.7508;WDFY3:1.71;WIPI2:1.6451;UVRAG:1.6116;ZFYVE1:1.5579;ULK2:1.5455 67 | 66 USP30 1.3242 STX17:1.9319;ULK2:1.8077;WIPI2:1.7333;UVRAG:1.6596;AMBRA1:1.6218;PIK3C3:1.603;ULK1:1.545;WIPI1:1.4743;RB1CC1:1.4485 68 | 67 FBXO42 1.3232 ZFYVE1:1.9039;UVRAG:1.7517;WIPI2:1.7349;ULK1:1.6418;STX17:1.6407;SIRT1:1.6244;PIK3C3:1.5766;ULK2:1.5631;PINK1:1.5506 69 | 68 ZMYM5 1.3232 STX17:1.8665;SIRT1:1.8478;PIK3C3:1.8222;UVRAG:1.7382;AMBRA1:1.7251;ZFYVE1:1.7089;ULK2:1.6451;WDFY3:1.6259;WIPI2:1.6019 70 | 69 ANKRD13C 1.323 STX17:1.8297;ULK2:1.7936;PIK3C3:1.7519;SIRT1:1.7217;UVRAG:1.7099;AMBRA1:1.6945;WDFY3:1.6852;ZFYVE1:1.6533;VMP1:1.5953 71 | 70 RMND5A 1.3227 ULK2:1.7587;ZFYVE1:1.696;WIPI2:1.6791;SIRT1:1.6762;STX17:1.6624;UVRAG:1.6571;WDFY3:1.5522;PIK3C3:1.534;ULK1:1.5172 72 | 71 TOMM20P4 1.3225 ULK2:2.4108;RB1CC1:2.358;PIK3C3:2.3198;PINK1:2.2868;ULK1:2.0393;TFEB:1.8883;GABARAPL2:1.6303;GABARAPL1:1.5543;STX17:1.4483 73 | 72 RNF111 1.3224 STX17:1.839;SIRT1:1.8364;WDFY3:1.8314;RB1CC1:1.7885;ZFYVE1:1.7831;PIK3C3:1.7711;UVRAG:1.7129;ULK2:1.5742;WIPI2:1.5215 74 | 73 RN7SKP70 1.3223 WIPI2:2.012;RB1CC1:1.9923;ZFYVE1:1.947;STX17:1.8913;VMP1:1.7009;SIRT1:1.6514;ULK1:1.6;TFEB:1.5484;WDFY3:1.5408 75 | 74 RPS10P26 1.3219 TFEB:3.1474;GABARAPL2:3.0792;GABARAP:2.9831;PINK1:2.9135;ZFYVE1:2.674;WIPI2:2.574;UVRAG:2.4356;SIRT1:2.1691;RB1CC1:2.1619 76 | 75 FBXO8 1.3219 ZFYVE1:1.8049;STX17:1.7822;ULK2:1.6886;RB1CC1:1.6837;UVRAG:1.6399;GABARAPL2:1.5755;PINK1:1.5559;WIPI1:1.5531;SIRT1:1.4737 77 | 76 UBE2B 1.3217 GABARAP:1.8734;RB1CC1:1.7559;WIPI2:1.6036;ZFYVE1:1.5893;VMP1:1.545;SQSTM1:1.51;GABARAPL1:1.5029;PIK3C3:1.4924;PINK1:1.4665 78 | 77 SECISBP2L 1.3212 STX17:1.7715;WDFY3:1.7632;ZFYVE1:1.7282;ULK2:1.6399;PIK3C3:1.5964;UVRAG:1.5903;PINK1:1.5485;AMBRA1:1.5255;SIRT1:1.5015 79 | 78 TRAPPC6B 1.32 STX17:1.7787;ZFYVE1:1.7294;GABARAPL2:1.7191;RB1CC1:1.6874;SIRT1:1.6221;WIPI2:1.6154;GABARAP:1.5704;UVRAG:1.5647;VMP1:1.5553 80 | 79 RRAGC 1.3199 ZFYVE1:1.6894;WIPI2:1.6732;GABARAP:1.6541;RB1CC1:1.5789;SIRT1:1.5679;SQSTM1:1.5507;STX17:1.5359;GABARAPL2:1.4982;PIK3C3:1.4973 81 | 80 RNF10 1.3197 GABARAPL2:1.8197;GABARAP:1.7786;AMBRA1:1.7129;PINK1:1.6876;ULK1:1.5721;ZFYVE1:1.5602;GABARAPL1:1.4734;RB1CC1:1.4692;VMP1:1.4649 82 | 81 RNF185 1.3193 WIPI2:1.7777;AMBRA1:1.7544;UVRAG:1.7137;STX17:1.6325;SIRT1:1.5621;ULK2:1.4946;RB1CC1:1.4777;GABARAP:1.4579;PIK3C3:1.4529 83 | 82 WIPI2 1.3188 AMBRA1:1.7149;ULK1:1.6928;STX17:1.6688;PIK3C3:1.6109;GABARAPL2:1.6017;UVRAG:1.6015;RB1CC1:1.5514;PINK1:1.4907;GABARAPL1:1.4283 84 | 83 ZNF740 1.3186 STX17:1.8144;WIPI2:1.7689;AMBRA1:1.7271;SIRT1:1.7003;UVRAG:1.6752;ULK2:1.6337;WDFY3:1.6101;ULK1:1.5868;TFEB:1.5492 85 | 84 SNRK 1.3181 AMBRA1:1.7352;UVRAG:1.6772;ZFYVE1:1.6727;STX17:1.6542;WDFY3:1.6248;PIK3C3:1.6194;RB1CC1:1.5857;SIRT1:1.5479;PINK1:1.5213 86 | 85 AFTPH 1.3176 AMBRA1:1.825;UVRAG:1.8222;PIK3C3:1.7112;ZFYVE1:1.704;WDFY3:1.6849;SIRT1:1.6331;WIPI2:1.612;STX17:1.5765;GABARAPL2:1.4551 87 | 86 TLK2P1 1.3176 STX17:2.1502;PIK3C3:2.1143;RB1CC1:2.1001;SIRT1:2.0752;UVRAG:1.9488;ZFYVE1:1.9122;WDFY3:1.7434;ULK2:1.3971;ULK1:1.336 88 | 87 ACBD5 1.3175 RB1CC1:1.7977;ZFYVE1:1.7141;ULK2:1.7058;UVRAG:1.6133;SIRT1:1.5885;WIPI2:1.5751;PIK3C3:1.5528;WDFY3:1.5056;AMBRA1:1.4858 89 | 88 CRBN 1.3174 RB1CC1:1.9066;GABARAPL2:1.7499;STX17:1.6844;ZFYVE1:1.6161;WIPI2:1.6123;UVRAG:1.6069;SIRT1:1.5985;PINK1:1.5205;ULK2:1.4977 90 | 89 ZNF394 1.3174 WIPI2:1.7507;ULK1:1.6868;SIRT1:1.6421;PIK3C3:1.6259;AMBRA1:1.5699;UVRAG:1.5173;RB1CC1:1.5111;ULK2:1.4858;GABARAPL1:1.4798 91 | 90 USP47 1.3168 STX17:1.8083;WDFY3:1.7435;SIRT1:1.7387;PIK3C3:1.7352;AMBRA1:1.7287;ULK2:1.6434;UVRAG:1.637;ZFYVE1:1.5706;WIPI2:1.5404 92 | 91 UBE4A 1.3168 RB1CC1:1.8189;ZFYVE1:1.7329;PIK3C3:1.6977;GABARAPL2:1.691;WDFY3:1.669;AMBRA1:1.6654;WIPI2:1.6504;UVRAG:1.6485;SIRT1:1.5154 93 | 92 RBL2 1.3168 RB1CC1:1.7683;ZFYVE1:1.7135;UVRAG:1.6856;PIK3C3:1.6802;ULK2:1.6369;SIRT1:1.6187;ULK1:1.618;WIPI2:1.5177;PINK1:1.5034 94 | 93 PPP1R21 1.3167 ZFYVE1:1.7744;PIK3C3:1.7601;STX17:1.6949;RB1CC1:1.6369;WDFY3:1.6337;WIPI2:1.6028;AMBRA1:1.5772;ULK2:1.5446;TFEB:1.5382 95 | 94 SERINC1 1.3165 GABARAP:1.938;RB1CC1:1.8641;ZFYVE1:1.6688;GABARAPL1:1.6412;PINK1:1.5891;SQSTM1:1.5385;VMP1:1.5056;PIK3C3:1.4951;ULK2:1.4706 96 | 95 GOSR1 1.3163 PIK3C3:1.9172;AMBRA1:1.7506;UVRAG:1.7282;ZFYVE1:1.6885;WIPI2:1.6582;SIRT1:1.654;ULK2:1.6183;RB1CC1:1.6104;WDFY3:1.5467 97 | 96 PIP4P1 1.316 ZFYVE1:1.8433;UVRAG:1.6951;GABARAP:1.6398;ULK1:1.6186;SIRT1:1.6026;RB1CC1:1.5272;GABARAPL2:1.5155;STX17:1.4988;AMBRA1:1.4988 98 | 97 TMEM9B 1.316 GABARAP:1.7399;PINK1:1.6734;STX17:1.6286;ZFYVE1:1.6248;WIPI2:1.5945;ULK2:1.5529;VMP1:1.5112;UVRAG:1.49;WIPI1:1.4717 99 | 98 GPR107 1.3159 AMBRA1:1.9053;ULK2:1.7376;WDFY3:1.7371;PIK3C3:1.7174;STX17:1.7128;WIPI2:1.6785;UVRAG:1.5465;RB1CC1:1.461;ULK1:1.4408 100 | 99 SETD3 1.3157 AMBRA1:1.7386;PIK3C3:1.6395;GABARAPL2:1.6334;STX17:1.6205;RB1CC1:1.6148;WIPI2:1.6048;ZFYVE1:1.5512;WDFY3:1.5131;ULK2:1.4842 101 | 100 SMCR8 1.3157 AMBRA1:1.8586;UVRAG:1.7953;WIPI2:1.7889;STX17:1.7345;ULK1:1.6916;WDFY3:1.6911;SIRT1:1.6371;ULK2:1.6344;RB1CC1:1.6073 102 | 101 VIPAS39 1.3154 STX17:1.8566;PIK3C3:1.8007;WIPI2:1.7038;AMBRA1:1.6301;UVRAG:1.6149;RB1CC1:1.5277;TFEB:1.4708;ULK1:1.4592;WDFY3:1.4488 103 | 102 UBR3 1.3153 RB1CC1:1.9342;STX17:1.8782;PIK3C3:1.7664;UVRAG:1.741;ULK2:1.7352;AMBRA1:1.7038;ZFYVE1:1.6096;SIRT1:1.5675;WIPI2:1.5098 104 | 103 TAB2 1.3153 UVRAG:1.7273;PIK3C3:1.7064;SIRT1:1.6762;STX17:1.6646;AMBRA1:1.6598;WDFY3:1.6461;ZFYVE1:1.5438;ULK2:1.5373;GABARAP:1.4799 105 | 104 RNF146 1.3151 ZFYVE1:1.7613;SIRT1:1.7045;RB1CC1:1.6891;PIK3C3:1.5904;UVRAG:1.5771;STX17:1.5766;WIPI2:1.5613;GABARAPL2:1.5437;AMBRA1:1.5153 106 | 105 ZBTB43 1.3146 WIPI2:1.7464;STX17:1.7418;SIRT1:1.7395;AMBRA1:1.7197;RB1CC1:1.6949;UVRAG:1.6878;WDFY3:1.5861;ULK1:1.5723;ULK2:1.5564 107 | 106 SNX13 1.3145 RB1CC1:2.053;STX17:1.9614;UVRAG:1.8145;WDFY3:1.7991;ULK2:1.7786;ZFYVE1:1.6307;SIRT1:1.5964;AMBRA1:1.5685;WIPI2:1.4762 108 | 107 TRAPPC11 1.3134 STX17:1.933;RB1CC1:1.7662;UVRAG:1.7643;WDFY3:1.7212;WIPI2:1.6907;AMBRA1:1.6755;ZFYVE1:1.644;SIRT1:1.6049;ULK2:1.5254 109 | 108 RIOK3 1.313 WIPI2:1.6495;RB1CC1:1.6088;ZFYVE1:1.5997;PIK3C3:1.5655;UVRAG:1.5589;STX17:1.5454;PINK1:1.5192;GABARAPL1:1.5159;GABARAP:1.5134 110 | 109 TBC1D17 1.3128 ULK1:1.8768;PINK1:1.7638;WIPI2:1.6714;TFEB:1.5158;RB1CC1:1.5118;AMBRA1:1.5113;GABARAPL1:1.4948;STX17:1.4697;GABARAP:1.468 111 | 110 UBR1 1.3128 PIK3C3:1.9819;WDFY3:1.9765;RB1CC1:1.8383;UVRAG:1.7963;AMBRA1:1.7233;ZFYVE1:1.6587;ULK2:1.631;SIRT1:1.5993;WIPI2:1.4769 112 | 111 GPBP1 1.3128 SIRT1:1.7843;UVRAG:1.7289;STX17:1.6941;GABARAPL2:1.6698;PIK3C3:1.666;AMBRA1:1.6458;WDFY3:1.636;ULK2:1.6337;WIPI2:1.5135 113 | 112 AMFR 1.3125 GABARAP:1.6341;STX17:1.6257;PINK1:1.5986;WIPI2:1.5837;UVRAG:1.5713;AMBRA1:1.567;ULK2:1.5394;RB1CC1:1.4889;ZFYVE1:1.4817 114 | 113 UBE2R2 1.3122 GABARAPL2:1.7119;ZFYVE1:1.6567;WIPI2:1.6532;STX17:1.5974;ULK2:1.5757;RB1CC1:1.5727;UVRAG:1.539;WDFY3:1.5139;AMBRA1:1.5002 115 | 114 RNF216 1.312 UVRAG:1.8838;WIPI2:1.8744;ZFYVE1:1.7792;ULK2:1.6568;PIK3C3:1.6545;WDFY3:1.6401;RB1CC1:1.6343;ULK1:1.6191;STX17:1.5865 116 | 115 PJA2 1.312 WDFY3:1.6829;GABARAPL2:1.6671;PIK3C3:1.627;STX17:1.6049;GABARAP:1.5851;ZFYVE1:1.5673;UVRAG:1.5544;ULK2:1.5536;GABARAPL1:1.4638 117 | 116 HECTD1 1.3119 WDFY3:1.8492;AMBRA1:1.7342;PIK3C3:1.6868;STX17:1.6394;UVRAG:1.6387;ZFYVE1:1.635;SIRT1:1.5734;WIPI2:1.5127;ULK2:1.5071 118 | 117 RHOT1 1.3119 RB1CC1:1.7752;PIK3C3:1.7704;UVRAG:1.7675;ULK2:1.7023;AMBRA1:1.6967;WIPI2:1.672;WDFY3:1.6021;SIRT1:1.602;GABARAPL2:1.5671 119 | 118 HEATR5B 1.3119 STX17:1.9323;WDFY3:1.8954;ZFYVE1:1.8274;AMBRA1:1.7734;RB1CC1:1.7569;UVRAG:1.7346;ULK2:1.6945;WIPI2:1.4974;ULK1:1.4464 120 | 119 TRPC4AP 1.3118 WIPI2:1.8065;ZFYVE1:1.7045;UVRAG:1.6715;STX17:1.5839;GABARAP:1.5147;ULK1:1.4877;PIK3C3:1.486;PINK1:1.4617;ULK2:1.4373 121 | 120 RNF41 1.3114 UVRAG:1.7284;WIPI2:1.7282;STX17:1.7062;ULK2:1.6428;AMBRA1:1.6295;SIRT1:1.5436;GABARAPL2:1.519;PIK3C3:1.4744;RB1CC1:1.4677 122 | 121 RAB33B 1.3114 SIRT1:1.7569;ZFYVE1:1.6596;PIK3C3:1.6514;UVRAG:1.644;RB1CC1:1.6248;AMBRA1:1.5325;ULK2:1.5157;GABARAPL2:1.504;WDFY3:1.4732 123 | 122 PIP4K2C 1.311 ZFYVE1:1.6988;STX17:1.6886;ULK1:1.6016;PIK3C3:1.559;ULK2:1.5337;GABARAPL2:1.5216;PINK1:1.5173;AMBRA1:1.4784;GABARAP:1.4749 124 | 123 PIAS1 1.3106 UVRAG:1.8196;STX17:1.7826;SIRT1:1.7648;RB1CC1:1.7201;AMBRA1:1.6804;WDFY3:1.637;ZFYVE1:1.5789;WIPI2:1.5006;ULK2:1.464 125 | 124 RNF139 1.3106 WIPI2:1.7375;GABARAPL2:1.7091;ZFYVE1:1.6693;STX17:1.623;UVRAG:1.62;SIRT1:1.6148;PIK3C3:1.561;ULK2:1.5383;AMBRA1:1.516 126 | 125 R3HCC1L 1.3104 UVRAG:1.8951;PIK3C3:1.8359;ZFYVE1:1.821;STX17:1.8085;SIRT1:1.6955;WIPI2:1.6647;RB1CC1:1.6438;ULK2:1.5234;WDFY3:1.5228 127 | 126 GOLGA1 1.3103 ULK2:1.8233;ZFYVE1:1.7931;PIK3C3:1.6929;AMBRA1:1.6508;WDFY3:1.6499;RB1CC1:1.6328;WIPI2:1.6234;UVRAG:1.6212;SIRT1:1.5908 128 | 127 GPR108 1.3102 WIPI2:1.6945;GABARAP:1.6797;PINK1:1.6174;TFEB:1.5914;GABARAPL2:1.5627;UVRAG:1.5456;ULK1:1.5302;WIPI1:1.5228;STX17:1.512 129 | 128 UBXN6 1.3099 GABARAP:1.794;WIPI2:1.7287;GABARAPL2:1.7196;ZFYVE1:1.7118;ULK1:1.6693;TFEB:1.5449;SQSTM1:1.5264;GABARAPL1:1.4943;STX17:1.4935 130 | 129 RNF44 1.3098 WIPI2:1.7283;ZFYVE1:1.6663;AMBRA1:1.59;UVRAG:1.5895;ULK2:1.5678;SIRT1:1.5394;RB1CC1:1.5043;TFEB:1.4807;WDFY3:1.4646 131 | 130 ZFYVE26 1.3096 AMBRA1:1.8403;STX17:1.815;WDFY3:1.7409;UVRAG:1.7156;ULK2:1.6629;ULK1:1.6359;WIPI2:1.6023;PIK3C3:1.567;RB1CC1:1.4894 132 | 131 SNX14 1.3092 STX17:1.8573;RB1CC1:1.733;UVRAG:1.7149;ULK2:1.7025;ZFYVE1:1.6589;WDFY3:1.586;GABARAPL2:1.5115;WIPI2:1.5073;VMP1:1.494 133 | 132 VCPIP1 1.3092 STX17:1.8305;ZFYVE1:1.8055;SIRT1:1.7384;UVRAG:1.7166;AMBRA1:1.7028;WDFY3:1.681;PIK3C3:1.6609;WIPI2:1.6428;ULK2:1.5194 134 | 133 APPBP2 1.3092 STX17:1.7407;RB1CC1:1.7179;SIRT1:1.6848;ULK2:1.6499;AMBRA1:1.6414;ZFYVE1:1.5991;WDFY3:1.5619;WIPI2:1.5541;UVRAG:1.5453 135 | 134 SPG11 1.3091 PIK3C3:1.8135;RB1CC1:1.7948;WDFY3:1.7852;ZFYVE1:1.7264;AMBRA1:1.7163;UVRAG:1.7076;WIPI2:1.6008;ULK2:1.5914;SIRT1:1.5156 136 | 135 STX12 1.3091 GABARAPL2:1.7018;ZFYVE1:1.6821;GABARAP:1.5867;ULK2:1.5687;PIK3C3:1.5594;WIPI2:1.5166;UVRAG:1.5135;PINK1:1.4726;VMP1:1.4635 137 | 136 RAB5A 1.309 GABARAPL2:1.7573;SIRT1:1.6988;GABARAP:1.6614;STX17:1.6181;UVRAG:1.6129;PIK3C3:1.6052;WIPI2:1.5407;ZFYVE1:1.5107;VMP1:1.4968 138 | 137 ABRAXAS2 1.3088 SIRT1:1.7977;RB1CC1:1.7811;UVRAG:1.7684;PIK3C3:1.7412;AMBRA1:1.6912;ZFYVE1:1.6892;WIPI2:1.6132;ULK2:1.5006;WDFY3:1.4739 139 | 138 SUDS3 1.3088 WIPI2:1.7697;STX17:1.7469;UVRAG:1.712;RB1CC1:1.5976;ULK2:1.579;ZFYVE1:1.5196;GABARAPL2:1.4648;SIRT1:1.4645;GABARAP:1.4563 140 | 139 GINM1 1.3086 GABARAP:1.7592;STX17:1.5666;GABARAPL1:1.5524;PINK1:1.5484;VMP1:1.5234;ULK2:1.5069;WIPI2:1.496;PIK3C3:1.4845;ZFYVE1:1.4814 141 | 140 SH3GLB1 1.3085 RB1CC1:1.7057;GABARAP:1.6794;GABARAPL2:1.662;PIK3C3:1.5732;UVRAG:1.5538;ULK2:1.5267;VMP1:1.5185;WDFY3:1.5114;WIPI2:1.4668 142 | 141 TSG101 1.3085 GABARAP:1.8887;RB1CC1:1.6569;AMBRA1:1.6241;WIPI2:1.6009;PIK3C3:1.5753;VMP1:1.5695;SQSTM1:1.5244;ZFYVE1:1.5146;SIRT1:1.4655 143 | 142 TMEM106B 1.3083 STX17:1.8815;ULK2:1.7094;PIK3C3:1.6943;WDFY3:1.577;SIRT1:1.532;ZFYVE1:1.5272;UVRAG:1.5078;WIPI2:1.4986;PINK1:1.495 144 | 143 ANKIB1 1.3081 STX17:1.8914;WDFY3:1.8691;UVRAG:1.7495;AMBRA1:1.7333;PIK3C3:1.6506;ULK2:1.6489;WIPI2:1.5717;SIRT1:1.5522;ZFYVE1:1.4992 145 | 144 RETREG3 1.3081 WIPI2:1.7721;AMBRA1:1.6565;GABARAP:1.5804;GABARAPL2:1.5795;ULK1:1.5731;UVRAG:1.5272;STX17:1.521;RB1CC1:1.5038;PINK1:1.4809 146 | 145 UVRAG 1.3078 AMBRA1:1.7845;ZFYVE1:1.7688;STX17:1.7441;ULK2:1.646;WIPI2:1.6015;SIRT1:1.5689;RB1CC1:1.5592;WDFY3:1.5257;TFEB:1.4344 147 | 146 ERLEC1 1.3074 STX17:1.713;WIPI1:1.6949;RB1CC1:1.6903;GABARAP:1.6667;PIK3C3:1.6002;ZFYVE1:1.5914;WIPI2:1.5696;VMP1:1.5395;UVRAG:1.4879 148 | 147 GOLGA2 1.3073 AMBRA1:1.6008;STX17:1.5968;RB1CC1:1.5847;ULK1:1.5774;GABARAP:1.5733;WIPI2:1.5646;WIPI1:1.5291;SQSTM1:1.4979;WDFY3:1.4928 149 | 148 AFF4 1.3072 WDFY3:1.8364;STX17:1.7532;SIRT1:1.7409;AMBRA1:1.6798;ZFYVE1:1.6761;ULK2:1.6189;UVRAG:1.5858;PIK3C3:1.4782;WIPI2:1.4754 150 | 149 SLC35A5 1.3072 UVRAG:1.7384;PIK3C3:1.7266;ZFYVE1:1.7026;ULK2:1.6918;RB1CC1:1.6886;SIRT1:1.5893;WDFY3:1.5706;GABARAPL2:1.55;WIPI2:1.4992 151 | 150 FAM192A 1.3071 GABARAPL2:1.7176;STX17:1.7055;PIK3C3:1.6556;UVRAG:1.6468;GABARAP:1.6113;ZFYVE1:1.6063;AMBRA1:1.592;RB1CC1:1.5816;VMP1:1.5276 152 | 151 UBXN7 1.3071 RB1CC1:1.9543;WDFY3:1.8195;SIRT1:1.7892;ZFYVE1:1.776;PIK3C3:1.762;WIPI2:1.6731;AMBRA1:1.5936;ULK2:1.5567;UVRAG:1.5006 153 | 152 GIT2 1.307 STX17:1.7991;AMBRA1:1.7563;ZFYVE1:1.6849;WIPI2:1.6691;PIK3C3:1.6684;WDFY3:1.6396;ULK2:1.5296;RB1CC1:1.5012;TFEB:1.4579 154 | 153 RAB22A 1.3067 WIPI2:1.691;UVRAG:1.6791;RB1CC1:1.672;ZFYVE1:1.6709;ULK2:1.6253;PIK3C3:1.5861;WDFY3:1.5556;GABARAPL2:1.5311;AMBRA1:1.5093 155 | 154 FCHO2 1.3066 STX17:1.8075;WDFY3:1.7773;ZFYVE1:1.7155;PIK3C3:1.6752;UVRAG:1.6428;ULK2:1.6318;SIRT1:1.603;AMBRA1:1.4909;ULK1:1.4813 156 | 155 RBM18 1.3065 WIPI2:1.702;ZFYVE1:1.6817;UVRAG:1.6703;RB1CC1:1.659;GABARAPL2:1.6504;PIK3C3:1.6327;AMBRA1:1.5855;SIRT1:1.549;VMP1:1.4798 157 | 156 STAM2 1.3062 PIK3C3:1.8412;RB1CC1:1.8109;UVRAG:1.7046;ZFYVE1:1.68;WDFY3:1.6227;WIPI2:1.6175;ULK2:1.5934;SIRT1:1.59;AMBRA1:1.5422 158 | 157 RNF14 1.306 ZFYVE1:1.6781;ULK2:1.629;STX17:1.5932;UVRAG:1.5867;RB1CC1:1.5771;WIPI2:1.5448;PINK1:1.5185;PIK3C3:1.4781;GABARAPL1:1.4552 159 | 158 ADIPOR1 1.3058 GABARAP:1.9106;PINK1:1.7209;WIPI2:1.6432;RB1CC1:1.5403;VMP1:1.5356;GABARAPL1:1.472;SQSTM1:1.468;ULK1:1.4631;WIPI1:1.4219 160 | 159 YPEL5 1.3057 GABARAPL2:1.8357;GABARAPL1:1.7343;PINK1:1.7095;RB1CC1:1.6615;WIPI1:1.6406;GABARAP:1.6226;WIPI2:1.5415;ULK1:1.5013;UVRAG:1.4102 161 | 160 ZSWIM8 1.3056 ULK1:1.9386;AMBRA1:1.9016;WIPI2:1.59;PINK1:1.5618;WDFY3:1.5428;ULK2:1.436;RB1CC1:1.4322;WIPI1:1.432;SIRT1:1.3973 162 | 161 UBE4B 1.3052 ZFYVE1:1.7464;UVRAG:1.7396;WIPI2:1.7314;PIK3C3:1.6685;RB1CC1:1.6335;STX17:1.6301;WDFY3:1.6173;ULK1:1.5844;SIRT1:1.5737 163 | 162 FAM168A 1.305 ZFYVE1:1.8289;ULK2:1.7868;UVRAG:1.764;AMBRA1:1.6288;STX17:1.5962;ULK1:1.5953;RB1CC1:1.5191;WIPI2:1.4669;PIK3C3:1.432 164 | 163 FAM193A 1.3048 UVRAG:1.873;WDFY3:1.847;ZFYVE1:1.8006;WIPI2:1.7645;ULK1:1.6615;RB1CC1:1.6298;STX17:1.6197;SIRT1:1.5938;PIK3C3:1.584 165 | 164 TBC1D12 1.3047 WDFY3:1.8261;STX17:1.7479;UVRAG:1.7356;ZFYVE1:1.684;SIRT1:1.6756;AMBRA1:1.6594;RB1CC1:1.5669;TFEB:1.5132;WIPI2:1.4761 166 | 165 RC3H1 1.3044 WDFY3:1.8499;AMBRA1:1.8078;STX17:1.8017;SIRT1:1.7859;ZFYVE1:1.7681;UVRAG:1.5946;ULK2:1.589;PIK3C3:1.58;WIPI2:1.5417 167 | 166 VPS8 1.3043 PIK3C3:1.7553;WDFY3:1.7279;ZFYVE1:1.701;STX17:1.6846;AMBRA1:1.6745;ULK2:1.6243;WIPI2:1.6029;RB1CC1:1.577;ULK1:1.4545 168 | 167 WDR48 1.304 STX17:1.8734;WIPI2:1.8018;RB1CC1:1.7873;PIK3C3:1.7651;ZFYVE1:1.7395;UVRAG:1.6029;SIRT1:1.6027;ULK2:1.5789;WDFY3:1.5267 169 | 168 FBXW4 1.304 PINK1:1.6623;TFEB:1.651;UVRAG:1.6424;ZFYVE1:1.6284;AMBRA1:1.6269;ULK2:1.6218;WIPI2:1.5508;PIK3C3:1.5026;ULK1:1.4693 170 | 169 HECTD3 1.3039 ULK1:1.7399;WIPI2:1.7297;PINK1:1.7285;AMBRA1:1.6326;STX17:1.6093;TFEB:1.5414;UVRAG:1.5135;PIK3C3:1.5122;ULK2:1.4676 171 | 170 WDR45B 1.3036 GABARAPL2:1.7478;GABARAP:1.6181;UVRAG:1.6119;RB1CC1:1.5433;AMBRA1:1.5227;VMP1:1.5195;ZFYVE1:1.5156;STX17:1.4761;PINK1:1.4215 172 | 171 RNF6 1.3034 STX17:1.8096;UVRAG:1.7226;SIRT1:1.6607;PIK3C3:1.6401;ULK2:1.6253;ZFYVE1:1.5805;GABARAPL2:1.518;WIPI2:1.4678;WDFY3:1.4377 173 | 172 PPM1A 1.3033 STX17:1.707;RB1CC1:1.7002;ZFYVE1:1.6754;WIPI2:1.6512;UVRAG:1.5903;SIRT1:1.5883;WDFY3:1.5734;ULK2:1.5416;GABARAPL2:1.5116 174 | 173 FAM76A 1.3031 STX17:1.7706;UVRAG:1.7261;ULK2:1.7207;AMBRA1:1.6605;WIPI2:1.6315;PINK1:1.5598;RB1CC1:1.5281;GABARAPL2:1.4647;WDFY3:1.4462 175 | 174 FAM8A1 1.3029 RB1CC1:1.691;GABARAP:1.6437;GABARAPL2:1.6344;UVRAG:1.6054;ULK2:1.5888;ZFYVE1:1.5706;PIK3C3:1.5321;WDFY3:1.5314;PINK1:1.5294 176 | 175 FBXW2 1.3028 WIPI2:1.7718;RB1CC1:1.7554;AMBRA1:1.6868;ULK2:1.6508;PIK3C3:1.6505;UVRAG:1.6384;WDFY3:1.5997;ZFYVE1:1.5652;SIRT1:1.4993 177 | 176 UHRF2 1.3027 ZFYVE1:1.7946;RB1CC1:1.735;AMBRA1:1.7227;UVRAG:1.7096;STX17:1.6772;WIPI2:1.6749;PIK3C3:1.6663;ULK2:1.6169;WDFY3:1.5654 178 | 177 RB1CC1 1.3026 WDFY3:1.712;SIRT1:1.6557;STX17:1.6096;ZFYVE1:1.5888;ULK1:1.5857;ULK2:1.5616;UVRAG:1.5592;WIPI2:1.5514;GABARAPL2:1.5078 179 | 178 FAM120B 1.3026 PIK3C3:1.7358;UVRAG:1.7051;AMBRA1:1.6994;STX17:1.6604;WDFY3:1.6573;ULK2:1.6223;WIPI2:1.6062;RB1CC1:1.5165;ULK1:1.4623 180 | 179 ZZEF1 1.3025 WDFY3:1.9203;ZFYVE1:1.7847;WIPI2:1.6594;ULK2:1.6567;STX17:1.6248;RB1CC1:1.603;UVRAG:1.595;ULK1:1.5811;PIK3C3:1.5672 181 | 180 TRIM23 1.3023 PIK3C3:1.7771;ZFYVE1:1.7719;STX17:1.7703;SIRT1:1.7492;WDFY3:1.5801;ULK2:1.5727;UVRAG:1.547;AMBRA1:1.5445;GABARAPL2:1.5323 182 | 181 PIKFYVE 1.302 WDFY3:1.9778;STX17:1.8512;AMBRA1:1.8337;PIK3C3:1.8207;SIRT1:1.7624;UVRAG:1.7356;ZFYVE1:1.6568;ULK2:1.5736;WIPI2:1.4688 183 | 182 HCFC2 1.3018 ULK2:1.8546;ZFYVE1:1.7516;SIRT1:1.6717;RB1CC1:1.6668;PIK3C3:1.6653;WDFY3:1.6451;UVRAG:1.6169;AMBRA1:1.5067;WIPI1:1.4309 184 | 183 TRAPPC10 1.3016 STX17:1.7644;AMBRA1:1.7539;WIPI2:1.7508;RB1CC1:1.6396;WDFY3:1.6381;ZFYVE1:1.6068;SIRT1:1.5603;ULK2:1.5431;PIK3C3:1.5292 185 | 184 SWT1 1.3016 ZFYVE1:1.8574;RB1CC1:1.7398;AMBRA1:1.6233;PIK3C3:1.6095;SIRT1:1.561;UVRAG:1.5487;ULK2:1.5427;PINK1:1.4913;ULK1:1.4613 186 | 185 SUCO 1.3016 STX17:1.7764;SIRT1:1.6971;AMBRA1:1.6632;UVRAG:1.6607;PIK3C3:1.6425;WDFY3:1.6241;WIPI2:1.5101;ULK2:1.4966;ZFYVE1:1.4688 187 | 186 FOXJ2 1.3015 ULK1:1.7684;AMBRA1:1.7086;UVRAG:1.6861;STX17:1.6114;WDFY3:1.5699;TFEB:1.5582;RB1CC1:1.5577;ULK2:1.5533;WIPI2:1.4961 188 | 187 ZCCHC6 1.3015 WDFY3:1.7608;PIK3C3:1.7482;ZFYVE1:1.7464;UVRAG:1.7428;STX17:1.7371;AMBRA1:1.6822;WIPI2:1.5071;SIRT1:1.5027;VMP1:1.4718 189 | 188 ANKRD40 1.3015 ULK2:1.7028;ZFYVE1:1.6582;RB1CC1:1.6072;WIPI2:1.5946;STX17:1.5588;AMBRA1:1.5422;GABARAPL2:1.4822;PINK1:1.4655;WDFY3:1.4555 190 | 189 WBP1L 1.3015 UVRAG:1.6257;ULK1:1.5697;ULK2:1.5368;WIPI2:1.5085;AMBRA1:1.4922;PINK1:1.488;GABARAP:1.4806;STX17:1.4624;TFEB:1.4535 191 | 190 TEX2 1.3013 AMBRA1:1.6638;ULK2:1.6609;ZFYVE1:1.6177;STX17:1.5964;WIPI1:1.5438;WIPI2:1.5168;PINK1:1.5081;TFEB:1.4993;ULK1:1.4913 192 | 191 FNIP1 1.3013 ZFYVE1:1.7131;SIRT1:1.7085;WDFY3:1.6813;STX17:1.6629;UVRAG:1.6539;ULK2:1.583;PIK3C3:1.5744;AMBRA1:1.5359;ULK1:1.428 193 | 192 TMF1 1.3013 STX17:1.9601;PIK3C3:1.7634;ZFYVE1:1.6862;SIRT1:1.6831;UVRAG:1.6107;WIPI2:1.6013;WDFY3:1.5627;ULK2:1.5194;AMBRA1:1.4416 194 | 193 SNAPIN 1.3007 GABARAPL2:1.8072;STX17:1.6577;WIPI2:1.6094;UVRAG:1.573;ULK2:1.5428;ZFYVE1:1.523;PINK1:1.5129;PIK3C3:1.4959;VMP1:1.423 195 | 194 TTC33 1.3003 STX17:1.7297;RB1CC1:1.7006;ULK2:1.6976;ZFYVE1:1.6837;UVRAG:1.6396;SIRT1:1.5668;GABARAPL2:1.479;AMBRA1:1.4698;WIPI2:1.4623 196 | 195 ARFGEF1 1.3002 PIK3C3:1.791;WDFY3:1.7872;STX17:1.7424;UVRAG:1.7297;AMBRA1:1.7011;ULK2:1.6444;SIRT1:1.5982;ZFYVE1:1.5716;WIPI2:1.5501 197 | 196 GAPVD1 1.3001 AMBRA1:1.822;RB1CC1:1.8139;PIK3C3:1.7578;STX17:1.7489;UVRAG:1.7261;WIPI2:1.6985;ULK2:1.5941;ZFYVE1:1.5832;SIRT1:1.5088 198 | 197 R3HDM2 1.3001 WDFY3:1.7161;ULK2:1.6717;UVRAG:1.6716;ZFYVE1:1.6397;RB1CC1:1.6259;ULK1:1.5847;STX17:1.5012;WIPI2:1.4899;PIK3C3:1.4805 199 | 198 WDR47 1.3 ULK2:1.7577;RB1CC1:1.7532;SIRT1:1.7034;UVRAG:1.6132;AMBRA1:1.6024;STX17:1.598;WDFY3:1.5957;PIK3C3:1.5495;GABARAPL2:1.4964 200 | 199 TAPT1 1.2999 PIK3C3:1.7411;ULK2:1.7219;STX17:1.6959;AMBRA1:1.67;UVRAG:1.6579;RB1CC1:1.5844;WDFY3:1.5832;WIPI2:1.5799;SIRT1:1.5286 201 | 200 ULK1 1.2998 PINK1:1.701;WIPI2:1.6928;ULK2:1.6289;AMBRA1:1.6046;RB1CC1:1.5857;GABARAPL1:1.4648;TFEB:1.4586;SIRT1:1.4422;WIPI1:1.4334 -------------------------------------------------------------------------------- /Data/example_metadata.csv: -------------------------------------------------------------------------------- 1 | Timestamp,Effect on Autophagy,Confidence Score,GEO Accession Number,GEO Platform,Organism,Control Samples,Treated Samples,Cell Type,Perturbation,Altered Condition,Drug Name,Name of the Perturbed Gene,Gene Alteration 2 | 7/12/2019 11:13:21,Inhibit,High,GSE103475,GPL570,Human,"GSM2771959, GSM2771960","GSM2771961, GSM2771962, GSM2771963, GSM2771964",HeLa,Genetic,,,BAG3,Knocked Out 3 | 7/12/2019 12:08:00,Activate,Low,GSE105167,GPL10558,Human,"GSM2824186, GSM2824187, GSM2824188","GSM2824189, GSM2824190, GSM2824191, GSM2824192",Monocytes,Physical,Euglycemia,,, 4 | 7/12/2019 12:08:33,Activate,High,GSE105167,GPL10558,Human,"GSM2824186, GSM2824187, GSM2824188","GSM2824193, GSM2824194, GSM2824195, GSM2824196",Monocytes,Physical,Type II diabetes,,, 5 | 7/12/2019 13:45:33,Activate,High,GSE106175,GPL16686,Human,"GSM2831004, GSM2831005, GSM2831006","GSM2831007, GSM2831008, GSM2831009",HeLa,Chemical,,Suberanilohydroxamic acid,, 6 | 7/12/2019 16:42:01,Activate,High,GSE108384,GPL570,Human,"GSM2897074, GSM2897075","GSM2897076, GSM2897077",HUVEC,Genetic,,,TFEB,Overexpressed 7 | 7/12/2019 12:06:01,Activate,High,GSE109473,GPL6887,Mouse,"GSM2944026, GSM2944027, GSM2944028, GSM2944032, GSM2944033, GSM2944034","GSM2944029, GSM2944030, GSM2944031, GSM2944035, GSM2944036, GSM2944037",Oocytes,Genetic,,,LHX8,Knocked Out 8 | 7/12/2019 11:52:17,Inhibit,Low,GSE109494,GPL6246,Mouse,"GSM2944378, GSM2944379, GSM2944380","GSM2944384, GSM2944385, GSM2944386",ESC,Genetic,,,BMPR1A,Knocked Down 9 | 7/12/2019 11:08:32,Activate,High,GSE11011,GPL571,Human,"GSM278487, GSM278488, GSM278489","GSM278484, GSM278485, GSM278486",MCF10A,Genetic,,,EIF4GI,Knocked Down 10 | 7/12/2019 11:59:59,Activate,Medium,GSE110200,GPL6885,Mouse,"GSM2982134, GSM2982135, GSM2982136, GSM2982137, GSM2982138, GSM2982139, GSM2982150, GSM2982151, GSM2982152, GSM2982153, GSM2982154, GSM2982155","GSM2982140, GSM2982141, GSM2982142, GSM2982143, GSM2982144, GSM2982156, GSM2982157, GSM2982158, GSM2982159, GSM2982160",Hepatocytes,Chemical,,Disulfiram (low),, 11 | 7/12/2019 12:00:36,Activate,Medium,GSE110200,GPL6885,Mouse,"GSM2982134, GSM2982135, GSM2982136, GSM2982137, GSM2982138, GSM2982139, GSM2982150, GSM2982151, GSM2982152, GSM2982153, GSM2982154, GSM2982155","GSM2982145, GSM2982146, GSM2982147, GSM2982148, GSM2982149, GSM2982161, GSM2982162, GSM2982163, GSM2982164, GSM2982165",Hepatocytes,Chemical,,Disulfiram (high),, 12 | 7/12/2019 11:41:43,Inhibit,High,GSE113424,GPL6480,Human,"GSM3106204, GSM3106207, GSM3106210","GSM3106202, GSM3106208, GSM3106209",HeLa,Physical,20A G4-ligand exposure,,, 13 | 7/12/2019 11:51:13,Inhibit,Medium,GSE113645,GPL570,Human,"GSM3110592, GSM3110593, GSM3110594","GSM3110595, GSM3110596, GSM3110597",CD14,Physical,Still's disease,,, 14 | 7/12/2019 12:07:26,Activate,High,GSE118172,GPL10558,Human,"GSM3320011, GSM3320012, GSM3320013, GSM3320014, GSM3320015, GSM3320016","GSM3320005, GSM3320006, GSM3320007, GSM3320008, GSM3320009, GSM3320010",B-cells,Physical,Exposure to PF-42942,,, 15 | 7/12/2019 11:19:31,Activate,High,GSE129203,GPL16951,Human,"GSM3702339, GSM3702340","GSM3702341, GSM3702342",Hep62,Chemical,,GSK343,, 16 | 7/12/2019 11:20:14,Activate,High,GSE129203,GPL16951,Human,"GSM3702343, GSM3702344","GSM3702345, GSM3702346",PLC-5,Chemical,,GSK343,, 17 | 7/16/2019 13:25:29,Inhibit,Medium,GSE13512,GPL1261,Mouse,"GSM318589, GSM318590","GSM318315, GSM318588",Paneth cells,Genetic,,,ATG16L1,Knocked Out 18 | 7/15/2019 10:35:15,Activate,Medium,GSE14288,GPL6246,Mouse,"GSM357433, GSM357434, GSM357435, GSM357436, GSM357437"," GSM357427, GSM357428, GSM357429, GSM357430, GSM357431, GSM357432",Myocytes,Genetic,,,CHF1,Overexpressed 19 | 7/12/2019 11:38:39,Inhibit,High,GSE15182,GPL8321,Mouse,"GSM378998, GSM378999","GSM379000, GSM379001",BCL2,Genetic,,,SQSTM1,Overexpressed 20 | 7/12/2019 11:45:40,Inhibit,Medium,GSE21935,GPL570,Human,"GSM545725, GSM545726, GSM545727, GSM545728, GSM545729, GSM545730, GSM545731, GSM545732, GSM545733, GSM545734, GSM545735, GSM545736, GSM545737, GSM545738, GSM545739, GSM545740, GSM545741, GSM545742, GSM545743","GSM545744, GSM545745, GSM545746, GSM545747, GSM545748, GSM545749, GSM545750, GSM545751, GSM545752, GSM545753, GSM545754, GSM545755, GSM545756, GSM545757",Neurons,Physical,Schizophrenia,,, 21 | 7/12/2019 11:57:13,Inhibit,Low,GSE23350,GPL6884,Human,"GSM573021, GSM573022, GSM573023, GSM573024, GSM573025, GSM573026, GSM573027, GSM573028, GSM573029, GSM573030, GSM573031, GSM573032, GSM573033, GSM573034, GSM573035, GSM573036, GSM573037, GSM573038, GSM573039, GSM573040, GSM573041, GSM573042, GSM573043, GSM573044","GSM572997, GSM572998, GSM572999, GSM573000, GSM573001, GSM573002, GSM573003, GSM573004, GSM573005, GSM573006, GSM573007, GSM573008, GSM573009, GSM573010, GSM573011, GSM573012, GSM573013, GSM573014, GSM573015, GSM573016, GSM573017, GSM573018, GSM573019, GSM573020",T-lymphocytes,Physical,Metachromatic leukodystrophy,,, 22 | 7/12/2019 11:42:24,Activate,High,GSE2435,GPL570,Human,"GSM45800, GSM45801","GSM45797, GSM45798",AWELLS,Physical,Starvation,,, 23 | 7/12/2019 11:09:12,Activate,Medium,GSE26459,GPL570,Human,"GSM649484, GSM649485, GSM649486","GSM649487, GSM649488, GSM649489",MCF7-B7,Chemical,,Estradiol,, 24 | 7/12/2019 11:11:28,Activate,High,GSE26459,GPL570,Human,"GSM649484, GSM649485, GSM649486","GSM649490, GSM649491, GSM649492",MCF7-B7,Chemical,,Tamoxifen,, 25 | 7/12/2019 11:09:46,Activate,Medium,GSE26459,GPL570,Human,"GSM649496, GSM649497, GSM649498","GSM649499, GSM649500, GSM649501",MCF7-G11,Chemical,,Estradiol,, 26 | 7/12/2019 11:12:38,No effect,Medium,GSE26459,GPL570,Human,"GSM649496, GSM649497, GSM649498","GSM649502, GSM649503, GSM649504",MCF7-G11,Chemical,,Tamoxifen,, 27 | 7/12/2019 13:39:26,Activate,High,GSE31040,GPL570,Human,"GSM769038, GSM769040, GSM769042, GSM769044, GSM769046, GSM769048","GSM769039, GSM769041, GSM769043, GSM769045, GSM769047, GSM769049",B-cells,Physical,Starvation,,, 28 | 7/12/2019 11:05:19,Inhibit,High,GSE31397,GPL570,Human,"GSM778832, GSM778833, GSM778834","GSM778829, GSM778830, GSM778831",MCF7,Genetic,,,miR-101,Overexpressed 29 | 7/15/2019 16:43:42,???,,GSE32872,GPL13730,Mouse,"GSM813636, GSM813637","GSM813638, GSM813639",Adipocytes,Physical,High fat diet,,, 30 | 7/15/2019 16:37:15,Inhibit,Medium,GSE34896,GPL2897,Mouse,"GSM857253, GSM857254, GSM857255","GSM857256, GSM857257, GSM857258",Muscle,Genetic,,,RPT3,Knocked Out 31 | 7/12/2019 12:14:48,Activate,High,GSE35391,GPL6947,Human,"GSM867245, GSM867256, GSM867259","GSM867254, GSM867255, GSM867266",C38,Chemical,,Flagellin,, 32 | 7/12/2019 12:15:24,Inhibit,High,GSE35391,GPL6947,Human,"GSM867245, GSM867256, GSM867259","GSM867250, GSM867262, GSM867267",C38,Chemical,,IDR-1018,, 33 | 7/12/2019 12:16:38,Activate,High,GSE35391,GPL6947,Human,"GSM867244, GSM867252, GSM867260","GSM867249, GSM867253, GSM867257",IB3-1,Chemical,,Flagellin,, 34 | 7/12/2019 12:17:19,Inhibit,High,GSE35391,GPL6947,Human,"GSM867244, GSM867252, GSM867260","GSM867248, GSM867263, GSM867264",IB3-1,Chemical,,IDR-1018,, 35 | 7/12/2019 11:34:41,Inhibit,High,GSE36085,GPL570,Human,"GSM880876, GSM880877","GSM880878, GSM880879",PC3,Genetic,,,VEGFC,Knocked Down 36 | 7/12/2019 11:35:27,Inhibit,High,GSE36085,GPL570,Human,"GSM880876, GSM880877","GSM880880, GSM880881",PC3,Genetic,,,NRP2,Knocked Down 37 | 7/12/2019 12:23:52,Activate,High,GSE36149,GPL570,Human,"GSM881823, GSM881829","GSM881824, GSM881830",RS4:11,Chemical,,Obtoclax (1x),, 38 | 7/12/2019 12:24:26,Activate,High,GSE36149,GPL570,Human,"GSM881823, GSM881829","GSM881825, GSM881831",RS4:11,Chemical,,Obtoclax (3x),, 39 | 7/12/2019 12:25:07,Activate,High,GSE36149,GPL570,Human,"GSM881826, GSM881832","GSM881827, GSM881833",SEM-K2,Chemical,,Obtoclax (1x),, 40 | 7/12/2019 12:25:38,Activate,High,GSE36149,GPL570,Human,"GSM881826, GSM881832","GSM881828, GSM881834",SEM-K2,Chemical,,Obtoclax (3x),, 41 | 7/12/2019 11:23:25,Activate,High,GSE36478,GPL340,Mouse,"GSM894470, GSM894471, GSM894474, GSM894475","GSM894468, GSM894469, GSM894472, GSM894473",Hepatocytes,Physical,Hepatocellular carcinoma,,, 42 | 7/12/2019 11:24:37,Activate,High,GSE38519,GPL6244,Human,"GSM944497, GSM944498","GSM944499, GSM944500",TF-1,Genetic,,,TRAF6,Knocked Down 43 | 7/12/2019 11:54:55,???,,GSE38543,GPL4685,Human,"GSM945065, GSM945066, GSM945068, GSM945070, GSM945071, GSM945077, GSM945090, GSM945092, GSM945093, GSM945095, GSM945097","GSM945063, GSM945067, GSM945072, GSM945073, GSM945075, GSM945080, GSM945083, GSM945084, GSM945085, GSM945086, GSM945091, GSM945096, GSM945101, GSM945102, GSM945103, GSM945104, GSM945105, GSM945111",Neutrophil,Physical,Agnogenic myeloid metaplasia,,, 44 | 7/12/2019 11:55:42,???,,GSE38543,GPL4685,Human,"GSM945065, GSM945066, GSM945068, GSM945070, GSM945071, GSM945077, GSM945090, GSM945092, GSM945093, GSM945095, GSM945097","GSM945081, GSM945082, GSM945106, GSM945107, GSM945108, GSM945109, GSM945110, GSM945112, GSM945113, GSM945114, GSM945115, GSM945116, GSM945117, GSM945118, GSM945119, GSM945120, GSM945121, GSM945122, GSM945123, GSM945124, GSM945125, GSM945126, GSM945127, GSM945128",Neutrophil,Physical,Essential thrombocythemia,,, 45 | 7/12/2019 11:56:18,???,,GSE38543,GPL4685,Human,"GSM945065, GSM945066, GSM945068, GSM945070, GSM945071, GSM945077, GSM945090, GSM945092, GSM945093, GSM945095, GSM945097","GSM945064, GSM945069, GSM945074, GSM945076, GSM945078, GSM945079, GSM945087, GSM945088, GSM945089, GSM945094, GSM945098, GSM945099, GSM945100",Neutrophil,Physical,Polycythemia vera,,, 46 | 7/12/2019 11:29:20,Activate,High,GSE40564,GPL570,Human,"GSM996643, GSM996644, GSM996645","GSM996646, GSM996647, GSM996648",H69,Chemical,,PIK75,, 47 | 7/12/2019 11:29:47,Activate,High,GSE40564,GPL570,Human,"GSM996643, GSM996644, GSM996645","GSM996649, GSM996650, GSM996651",H69,Chemical,,TGX221,, 48 | 7/12/2019 11:30:51,Inhibit,High,GSE42174,GPL570,Human,"GSM1034131, GSM1034132, GSM1034133","GSM1034134, GSM1034135, GSM1034136",KARPAS-231,Genetic,,,LITAF,Knocked Out 49 | 7/12/2019 11:32:27,Inhibit,High,GSE42174,GPL570,Human,"GSM1034123, GSM1034124","GSM1034125, GSM1034126",RL,Genetic,,,LITAF,Overexpressed 50 | 7/12/2019 11:33:11,Inhibit,High,GSE42174,GPL570,Human,"GSM1034127, GSM1034128","GSM1034129, GSM1034130",SC-1,Genetic,,,LITAF,Overexpressed 51 | 7/12/2019 11:31:25,Inhibit,High,GSE42174,GPL570,Human,"GSM1034137, GSM1034138, GSM1034139","GSM1034140, GSM1034141, GSM1034142",VAL,Genetic,,,LITAF,Knocked Out 52 | 7/12/2019 12:21:11,Activate,Medium,GSE42242,GPL10558,Human,"GSM1036168, GSM1036169, GSM1036170, GSM1036171","GSM1036172, GSM1036173, GSM1036174, GSM1036175",MCF7,Genetic,,,HDAC4,Overexpressed 53 | 7/12/2019 12:19:14,Activate,Medium,GSE42432,GPL11532,Human,"GSM1039952, GSM1039954, GSM1039955, GSM1039957, GSM1039959, GSM1039962, GSM1039963, GSM1039965, GSM1039967","GSM1039951, GSM1039953, GSM1039956, GSM1039958, GSM1039960, GSM1039961, GSM1039964, GSM1039966, GSM1039968",Adipocytes,Chemical,,Resveratrol,, 54 | 7/15/2019 16:34:59,Activate,High,GSE43077,GPL13912,Mouse,"GSM1056110, GSM1056111","GSM1056112, GSM1056113",Fibroblasts,Genetic,,,TIAR,Knocked Out 55 | 7/15/2019 16:35:35,Activate,High,GSE43077,GPL13912,Mouse,"GSM1056110, GSM1056111","GSM1056114, GSM1056115",Fibroblasts,Genetic,,,TIA1,Knocked Out 56 | 7/12/2019 11:06:36,Activate,High,GSE44187,GPL2895,Human,"GSM1080504, GSM1080505, GSM1080506","GSM1080507, GSM1080508, GSM1080509",MCF7,Genetic,,,SIM2s,Knocked Down 57 | 7/12/2019 11:49:26,Activate,High,GSE44925,GPL6246,Mouse,"GSM1093973, GSM1093974, GSM1093975","GSM1093976, GSM1093977, GSM1093978",Renal,Genetic,,,VHL,Knocked Out 58 | 7/12/2019 11:36:11,Activate,High,GSE47106,GPL1528,Human,"GSM1144817, GSM1144818","GSM1144819, GSM1144820",786-O,Genetic,,,VHL,Overexpressed 59 | 7/15/2019 11:25:12,Inhibit,Low,GSE48092,GPL6246,Mouse,"GSM1168397, GSM1168398, GSM1168399","GSM1168400, GSM1168401, GSM1168402",ESCs,Genetic,,,BMPR1A,Knocked Out 60 | 7/15/2019 16:28:14,Activate,High,GSE48946,GPL13912,Mouse,"GSM1187285, GSM1187286","GSM1187287, GSM1187288",Pancreatic cells,Genetic,,,SPINK3,Knocked Out 61 | 7/15/2019 10:59:46,Activate,High,GSE49553,GPL6246,Mouse,"GSM1201683, GSM1201684, GSM1201685","GSM1201686, GSM1201687, GSM1201688",Hepatocytes,Physical,Starvation,,, 62 | 7/15/2019 11:01:52,Inhibit,High,GSE49553,GPL6246,Mouse,"GSM1201683, GSM1201684, GSM1201685","GSM1201689, GSM1201690, GSM1201691",Hepatocytes,Genetic,,,LAMP-2A,Knocked Out 63 | 7/15/2019 16:21:13,???,,GSE49824,GPL6246,Mouse,"GSM1207761, GSM1207762, GSM1207763, GSM1207764","GSM1207757, GSM1207758, GSM1207759, GSM1207760",Hepatocytes,Genetic,,,HMGB1,Knocked Out 64 | 7/12/2019 11:33:41,Activate,Medium,GSE51512,GPL6244,Human,"GSM1246728, GSM1246729, GSM1246730","GSM1246731, GSM1246732, GSM1246733",BE2C,Chemical,,BIX01294,, 65 | 7/12/2019 11:07:35,Inhibit,High,GSE52508,GPL6244,Human,"GSM1267990, GSM1267991","GSM1267986, GSM1267987, GSM1267988, GSM1267989",ZR-75-1,Genetic,,,EL24,Knocked Down 66 | 7/16/2019 13:23:37,Inhibit,High,GSE54019,GPL7202,Mouse,"GSM1305938, GSM1305940","GSM1305937, GSM1305939",Muscle,Genetic,,,ATG7,Knocked Down 67 | 7/15/2019 16:13:50,Inhibit,High,GSE54417,GPL18223,Mouse,"GSM1314720, GSM1314721, GSM1314722, GSM1314723, GSM1314724","GSM1314725, GSM1314726, GSM1314727, GSM1314728, GSM1314729",Renal cells,Genetic,,,mTORC1,Knocked Out 68 | 7/12/2019 12:09:18,Inhibit,Low,GSE54493,GPL10558,Human,"GSM1316788, GSM1316789","GSM1316790, GSM1316791",SK-Mel-147,Genetic,,,miR-638,Overexpressed 69 | 7/15/2019 11:13:14,Activate,Low,GSE54774,GPL1261,Mouse,"GSM1323774, GSM1323775, GSM1323776","GSM1323777, GSM1323778, GSM1323779",Pancreatic cells,Chemical,,Exenatide (3ug/kg),, 70 | 7/15/2019 11:14:02,Activate,Low,GSE54774,GPL1261,Mouse,"GSM1323774, GSM1323775, GSM1323776","GSM1323780, GSM1323781, GSM1323782",Pancreatic cells,Chemical,,Exenatide (10ug/kg),, 71 | 7/15/2019 11:14:35,Activate,Low,GSE54774,GPL1261,Mouse,"GSM1323774, GSM1323775, GSM1323776","GSM1323783, GSM1323784, GSM1323785",Pancreatic cells,Chemical,,Exenatide (30ug/kg),, 72 | 7/12/2019 11:47:25,Activate,Medium,GSE54917,GPL11180,Mouse,"GSM1326549, GSM1326550, GSM1326551","GSM1326552, GSM1326553, GSM1326554, GSM1326555",Muscle,Genetic,,,TP53INP2,Overexpressed 73 | 7/12/2019 11:48:06,Inhibit,Medium,GSE54917,GPL11180,Mouse,"GSM1326543, GSM1326544, GSM1326545","GSM1326546, GSM1326547, GSM1326548",Muscle,Genetic,,,TP53INP2,Knocked Out 74 | 7/12/2019 11:18:32,Inhibit,High,GSE56337,GPL6246,Mouse,"GSM1359289, GSM1359291, GSM1359292","GSM1359290, GSM1359293, GSM1359294",Enterocytes,Genetic,,,ATG7,Knocked Out 75 | 7/15/2019 16:24:09,???,,GSE56918,GPL11533,Mouse,"GSM1371231, GSM1371232, GSM1371233, GSM1371234","GSM1371235, GSM1371236, GSM1371237, GSM1371238",Adipocytes,Genetic,,,SEL1L,Knocked Out 76 | 7/16/2019 13:21:40,Inhibit,High,GSE57761,GPL16570,Mouse,"GSM1388170, GSM1388171","GSM1388172, GSM1388173, GSM1388174",Erythroid,Genetic,,,ATG7,Knocked Out 77 | 7/12/2019 12:10:12,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438765, GSM1438766, GSM1438767",IMR90,Chemical,,Tamoxifen (24h),, 78 | 7/12/2019 12:10:51,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438768, GSM1438769, GSM1438770",IMR90,Chemical,,Tamoxifen (2d),, 79 | 7/12/2019 12:11:28,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438771, GSM1438772, GSM1438773",IMR90,Chemical,,Tamoxifen (2h),, 80 | 7/12/2019 12:12:09,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438774, GSM1438775, GSM1438776",IMR90,Chemical,,Tamoxifen (4d),, 81 | 7/12/2019 12:12:50,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438777, GSM1438778, GSM1438779",IMR90,Chemical,,Tamoxifen (6d),, 82 | 7/12/2019 12:13:24,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438780, GSM1438781, GSM1438782",IMR90,Chemical,,Tamoxifen (8d),, 83 | 7/12/2019 12:13:56,Activate,Low,GSE59522,GPL6102,Human,"GSM1438762, GSM1438763, GSM1438764","GSM1438783, GSM1438784, GSM1438785",IMR90,Chemical,,Tamoxifen (8h),, 84 | 7/15/2019 10:26:20,???,,GSE60931,GPL13912,Mouse,"GSM1493832, GSM1493833, GSM1493834, GSM1493835","GSM1493848, GSM1493849, GSM1493850",Muscle,Genetic,,,MCU,Overexpressed 85 | 7/15/2019 10:27:06,???,,GSE60931,GPL13912,Mouse,"GSM1493832, GSM1493833, GSM1493834, GSM1493835","GSM1493855, GSM1493856, GSM1493857",Muscle,Genetic,,,MCU,Knocked Out 86 | 7/15/2019 11:08:46,Inhibit,Medium,GSE62210,GPL6246,Mouse,"GSM1522560, GSM1522561, GSM1522562","GSM1522557, GSM1522558, GSM1522559",Neurons,Genetic,,,p62,Knocked Out 87 | 7/15/2019 11:08:00,Inhibit,Medium,GSE62210,GPL6246,Mouse,"GSM1522560, GSM1522561, GSM1522562","GSM1522554, GSM1522555, GSM1522556",Neurons,Physical,Huntington's disease,,, 88 | 7/12/2019 13:49:18,???,,GSE62693,GPL570,Human,"GSM1531539, GSM1531540","GSM1531535, GSM1531536",Monocytes,Genetic,,,miR-125b,Overexpressed 89 | 7/12/2019 13:49:54,???,,GSE62693,GPL570,Human,"GSM1531539, GSM1531540","GSM1531537, GSM1531538",Monocytes,Genetic,,,miR-125b,Knocked Down 90 | 7/12/2019 13:42:16,Inhibit,High,GSE66475,GPL10558,Human,"GSM1623089, GSM1623090, GSM1623091","GSM1623092, GSM1623093, GSM1623094",HEK293A,Genetic,,,WAC,Knocked Down 91 | 7/12/2019 13:43:04,Inhibit,High,GSE66475,GPL10558,Human,"GSM1623089, GSM1623090, GSM1623091","GSM1623095, GSM1623096",HEK293A,Genetic,,,RNF40,Knocked Down 92 | 7/12/2019 13:43:47,Inhibit,high,GSE66475,GPL570,Human,"GSM1623089, GSM1623090, GSM1623091","GSM1623097, GSM1623098, GSM1623099",HEK293A,Genetic,,,RNF20,Knocked Down 93 | 7/15/2019 10:48:45,Inhibit,High,GSE66730,GPL1261,Mouse,"GSM1631144, GSM1631145, GSM1631146, GSM1631154, GSM1631155, GSM1631156, GSM1631157","GSM1631147, GSM1631148, GSM1631149, GSM1631150, GSM1631151, GSM1631152, GSM1631153",Neurons,Genetic,,,TFRC,Knocked Out 94 | 7/12/2019 12:21:45,Activate,Low,GSE69165,GPL10558,Human,"GSM1694224, GSM1694225, GSM1694226","GSM1694227, GSM1694228, GSM1694229",Mec-1,Genetic,,,SLAMF1,Knocked Out 95 | 7/15/2019 10:38:22,Activate,Low,GSE71501,GPL11180,Mouse,"GSM1835819, GSM1835820, GSM1835821, GSM1835822, GSM1835827, GSM1835828, GSM1835829, GSM1835830","GSM1835823, GSM1835824, GSM1835825, GSM1835826, GSM1835831, GSM1835832, GSM1835833, GSM1835834",Muscle,Genetic,,,MFN2,Knocked Out 96 | 7/15/2019 10:41:31,Inhibit,High,GSE75218,GPL16570,Mouse,"GSM1945889, GSM1945890, GSM1945891, GSM1945892","GSM1945893, GSM1945894, GSM1945895, GSM1945896",T-cells,Genetic,,,ATG7,Knocked Down 97 | 7/15/2019 10:43:24,Activate,Medium,GSE75218,GPL16570,Mouse,"GSM1945889, GSM1945890, GSM1945891, GSM1945892","GSM1945897, GSM1945898, GSM1945899, GSM1945900",T-cells,Chemical,,Rapamycin,, 98 | 7/12/2019 12:20:32,Activate,Low,GSE77320,GPL10558,Human,"GSM2049196, GSM2049198","GSM2049197, GSM2049199",MKN45,Chemical,,Crizontinib,, 99 | 7/12/2019 12:19:54,Activate,Low,GSE77320,GPL10558,Human,"GSM2049200, GSM2049202, GSM2049204","GSM2049201, GSM2049203, GSM2049205",SNU5,Chemical,,Crizontinib,, 100 | 7/12/2019 12:22:27,???,,GSE79077,GPL17077,Human,"GSM2084919, GSM2084923, GSM2084927","GSM2084921, GSM2084925, GSM2084929",Mononuclear,Chemical,,Interferon-gamma,, 101 | 7/12/2019 12:23:15,???,,GSE79077,GPL17077,Human,"GSM2084919, GSM2084923, GSM2084927","GSM2084920, GSM2084924, GSM2084928",Mononuclear,Chemical,,Dexamethasone,, 102 | 7/15/2019 16:41:31,Activate,Medium,GSE79508,GPL16570,Mouse,"GSM2096458, GSM2096459","GSM2096460, GSM2096461",BMDM,Genetic,,,CTSB,Knocked Out 103 | 7/15/2019 10:31:20,Inhibit,High,GSE81719,GPL6246,Mouse,"GSM2174426, GSM2174427, GSM2174428, GSM2174429","GSM2174430, GSM2174431, GSM2174432, GSM2174433",HSCs,Genetic,,,ATG12,Knocked Out 104 | 7/15/2019 16:17:44,Inhibit,High,GSE83856,GPL16570,Mouse,"GSM2219803, GSM2219807","GSM2219805, GSM2219809",Melanocytes,Genetic,,,ATG7,Knocked Out 105 | 7/15/2019 10:55:05,Inhibit,Medium,GSE84935,GPL16570,Mouse,"GSM2254403, GSM2254404, GSM2254405","GSM2254409, GSM2254410, GSM2254411",Keratinocytes,Chemical,,Paraquat,, 106 | 7/15/2019 10:57:01,Activate,High ,GSE86882,GPL6885,Mouse,"GSM2309823, GSM2309824, GSM2309825, GSM2309826","GSM2309827, GSM2309828, GSM2309829, GSM2309830",Cardiomyocytes,Chemical,,Spermidine,, 107 | 7/12/2019 11:37:03,Inhibit,High,GSE89766,GPL6244,Human,"GSM2388397, GSM2388398, GSM2388399","GSM2388400, GSM2388401, GSM2388402",786-O,Chemical,,ROC-325,, 108 | 7/12/2019 11:37:50,Inhibit,High,GSE89766,GPL6244,Human,"GSM2388403, GSM2388404, GSM2388405","GSM2388406, GSM2388407, GSM2388408",A498,Chemical,,ROC-325,, 109 | 7/12/2019 11:14:36,Activate,Medium,GSE98523,GPL2986,Human,"GSM2598211, GSM2598212, GSM2598213","GSM2598214, GSM2598215, GSM2598216",BeWo,Chemical,,Forskolin,, -------------------------------------------------------------------------------- /Data/generif_predictions.tsv: -------------------------------------------------------------------------------- 1 | Rank Gene Score Genes contributing most to score:similarity score 2 | 1 MAP1LC3A 0.9928 GABARAPL2:6.5723;GABARAP:6.2407;NBR1:5.7104;MAP1LC3B:5.6944;ATG4B:5.5874;SQSTM1:5.1925;ATG13:5.1823;BECN1:5.1042;GABARAPL1:4.7377 3 | 2 ULK1 0.9829 ULK2:8.8945;ATG101:8.5474;ATG9A:6.8928;ATG14:6.5589;RB1CC1:6.1052;GABARAPL2:4.6935;AMBRA1:4.6481;ATG4B:4.4416;GABARAP:3.9146 4 | 3 ATG5 0.964 ATG2B:7.1603;ATG7:6.6166;ATG16L2:6.3605;ATG10:6.003;ATG3:5.5377;MAP1LC3B:5.5138;AMBRA1:5.2348;ATG16L1:4.7012;BECN1:4.1533 5 | 4 BECN1 0.8781 UVRAG:6.2139;ATG4C:5.9675;MAP1LC3A:5.1042;MAP1LC3B:4.9746;AMBRA1:4.6344;PIK3C3:4.6122;ATG5:4.1533;DRAM1:3.735;VMP1:3.735 6 | 5 SQSTM1 0.8582 MAP1LC3A:5.1925;ATG16L2:5.1534;MAP1LC3B:4.9508;WDFY3:4.5243;CALCOCO2:4.1934;DRAM1:3.7122;VMP1:3.7122;ULK2:3.5857;GABARAPL2:3.1813 7 | 6 MAP1LC3B 0.8474 GABARAP:6.4229;GABARAPL2:6.2461;ATG12:5.9869;GABARAPL1:5.7025;MAP1LC3A:5.6944;ATG5:5.5138;AMBRA1:5.219;ATG4B:5.0095;BECN1:4.9746 8 | 7 ATG7 0.7312 ATG3:7.6874;ATG5:6.6166;ATG13:5.766;ATG4B:5.5994;GABARAPL1:5.3165;AMBRA1:4.8365;MAP1LC3A:4.6521;ATG12:4.6289;ATG16L1:4.492 9 | 8 GABARAPL2 0.7082 GABARAP:8.9777;ATG4A:8.0079;STX17:7.9014;ATG3:7.0697;MAP1LC3A:6.5723;ATG4B:6.5483;MAP1LC3B:6.2461;IRGM:5.7525;PIK3C3:5.3463 10 | 9 ATG12 0.6575 ATG2B:8.4439;ATG3:8.3851;ATG5:8.3068;ATG10:8.2745;AMBRA1:6.5015;MAP1LC3B:5.9869;ATG16L1:5.7391;GABARAP:5.7391;ATG7:4.6289 11 | 10 ATG16L1 0.6154 ATG2B:6.315;WIPI2:5.8623;ATG12:5.7391;ATG9A:5.6626;ATG3:4.7091;ATG5:4.7012;RB1CC1:4.5771;ATG7:4.492;MAP1LC3A:3.0191 12 | 11 GABARAPL1 0.5953 GABARAPL2:9.2457;GABARAP:8.7476;ATG3:8.5103;NBR1:7.6977;ATG4B:6.9917;MAP1LC3B:5.7025;ATG7:5.3165;MAP1LC3A:4.7377;CASP3:2.5577 13 | 12 ATG3 0.592 ATG12:8.3851;ATG7:7.6874;GABARAP:7.2474;MAP1LC3B:7.0857;GABARAPL2:7.0697;ATG4B:6.8088;ATG5:5.5377;ATG16L1:4.7091;BECN1:3.4399 14 | 13 ATG4B 0.5789 ATG4D:8.8579;GABARAPL1:6.9917;ATG3:6.8088;GABARAPL2:6.5483;ATG7:5.5994;MAP1LC3A:5.5874;MAP1LC3B:5.0095;ULK1:4.4416;ATG5:4.0689 15 | 14 GABARAP 0.5167 GABARAPL1:8.7476;ATG3:7.2474;MAP1LC3B:6.4229;MAP1LC3A:6.2407;ATG12:5.7391;ULK1:3.9146;ATG5:3.551;SQSTM1:2.4773;MTOR:0.8547 16 | 15 MTOR 0.4868 ATG4C:3.5498;WIPI1:2.5262;ULK1:2.3664;ULK2:2.2913;TFEB:2.0555;RB1CC1:2.0412;STX17:2.0216;PIK3C3:1.8279;AMBRA1:1.2522 17 | 16 ATG13 0.437 ULK2:10.1515;ULK1:9.1311;RB1CC1:8.8315;ATG7:5.766;MAP1LC3A:5.1823;MTOR:3.5498 18 | 17 SH3GLB1 0.4166 UVRAG:6.4172;ATG9A:6.3792;IRGM:5.6612;MAP1LC3B:5.1744;ATG5:4.2293;BECN1:4.0351;SQSTM1:3.0987 19 | 18 ATG4D 0.3974 ATG4A:10.3254;GABARAPL1:9.5671;ATG4B:8.8579;ATG9A:8.78;CASP3:4.2419 20 | 19 AMBRA1 0.3866 ATG5:5.2348;MAP1LC3B:5.219;ATG7:4.8365;ULK1:4.6481;BECN1:4.6344;SQSTM1:3.1393;MTOR:1.2522 21 | 20 PIK3C3 0.3784 ATG14:6.6468;GABARAPL2:5.3463;BECN1:4.6122;ATG5:3.8608;ULK1:3.3051;SQSTM1:1.957;MTOR:1.8279 22 | 21 RB1CC1 0.3741 WIPI2:7.3776;ULK2:6.3862;ULK1:6.1052;ATG16L1:4.5771;MAP1LC3A:3.4947;MTOR:2.0412 23 | 22 ATG9B 0.3368 ATG4D:11.2179;ATG9A:9.5563;ATG12:8.636;ATG5:6.3605 24 | 23 ATG2B 0.3256 ATG12:8.4439;ATG9A:8.3661;ATG5:7.1603;ATG16L1:6.315 25 | 24 PRKN 0.3048 BNIP3L:3.8273;ATG9A:3.0816;SQSTM1:1.906;GABARAP:1.8783;MAP1LC3A:1.7673;ATF4:1.0557;ULK1:1.0416;BNIP3:0.9649;BECN1:0.4323 26 | 25 ATG14 0.2944 BECN1:6.6953;PIK3C3:6.6468;ULK1:6.5589;MAP1LC3A:4.6171 27 | 26 RUBCN 0.2876 UVRAG:7.3218;PIK3C3:6.1503;MAP1LC3A:5.0973;BECN1:4.9058 28 | 27 ULK2 0.2773 ULK1:8.8945;RB1CC1:6.3862;SQSTM1:3.5857;MTOR:2.2913 29 | 28 NA 0.2707 ATG2B:0.9327;ATG4C:0.9327;ATG4D:0.6833;ATG4A:0.6409;VMP1:0.6279;ATG12:0.5897;UVRAG:0.5765;ATG10:0.4894;ATG7:0.4241 30 | 29 PRKAA1 0.2678 ATG13:3.5738;ATG9A:2.4835;SIRT1:1.7959;MTOR:1.7624;MAP1LC3B:1.566;BNIP3:1.1185;BECN1:0.5159;SQSTM1:0.5085;CASP3:0.4598 31 | 30 WIPI2 0.2549 RB1CC1:7.3776;MAP1LC3A:6.6966;ATG16L1:5.8623 32 | 31 UVRAG 0.2531 PIK3C3:7.019;BECN1:6.2139;ATG5:4.0318;MTOR:1.1097 33 | 32 ATG9A 0.2497 ATG2B:8.3661;ULK1:6.8928;ATG16L1:5.6626 34 | 33 PIK3R4 0.2481 UVRAG:8.8184;TFEB:7.463;BECN1:5.3941 35 | 34 PRKAB1 0.2252 ULK1:3.7482;BNIP3:2.7209;MTOR:2.1923;ATF4:2.0596;SIRT1:1.6537 36 | 35 CASP3 0.2166 DRAM1:2.6727;GABARAPL1:2.5577;BAG3:1.2037;ULK1:0.85;BECN1:0.8436;ATG16L1:0.7453;ATF4:0.4945;SIRT1:0.0966;MTOR:0.065 37 | 36 NCF4 0.2149 IRGM:5.4186;PIK3C3:5.0147;ATG16L1:4.1335 38 | 37 BNIP3 0.2078 MAP1LC3A:3.1016;ULK1:2.587;PINK1:1.4826;BECN1:1.4077;MTOR:0.6554 39 | 38 ATG101 0.2062 ULK1:8.5474;ATG7:7.746 40 | 39 ATG4A 0.2049 ATG4B:9.3265;GABARAPL2:8.0079 41 | 40 TRAF6 0.2034 AMBRA1:3.2634;SQSTM1:2.6242;ULK1:1.5802;PINK1:1.2786;BECN1:0.7284;MTOR:0.2969 42 | 41 CHUK 0.2001 AMBRA1:3.7195;ATG16L1:1.7542;BAG3:1.7168;SQSTM1:1.4995;MTOR:0.7196 43 | 42 RPS6KB1 0.1994 MTOR:3.717;PIK3C3:3.0192;ULK1:2.4477;ATF4:1.0942;SIRT1:0.4693 44 | 43 BNIP3L 0.1973 MAP1LC3B:4.7618;PINK1:3.7481;SQSTM1:2.7292 45 | 44 OPTN 0.1968 CALCOCO2:4.6054;MAP1LC3B:3.0607;PINK1:1.4582;SQSTM1:1.3688 46 | 45 DAPK1 0.1905 PIK3C3:2.7852;BECN1:2.5552;BNIP3:2.1119;CASP3:1.0459;SIRT1:0.3992;MTOR:0.2775 47 | 46 FOXO1 0.1886 ATG14:2.5811;ATG7:1.6063;SIRT1:1.5102;BNIP3:0.8502;MTOR:0.7366;ATF4:0.5408 48 | 47 RAB33B 0.1864 ATG16L1:7.3059;ATG5:7.1603 49 | 48 RAB5A 0.1855 PIK3C3:4.8208;ULK1:2.7435;BECN1:1.5262;MTOR:0.4082 50 | 49 CUL3 0.1831 PIK3C3:3.8306;ULK1:3.216;SQSTM1:1.8838;SIRT1:0.7786 51 | 50 HSPA5 0.1807 ATF4:1.9685;MAP1LC3B:1.6565;BAG3:1.1117;MAP1LC3A:1.0582;BECN1:0.5576;SQSTM1:0.5498;CASP3:0.4977;MTOR:0.2193 52 | 51 TRIM54 0.1799 MAP1LC3A:6.5723;SQSTM1:5.37 53 | 52 ATG16L2 0.179 ATG5:6.3605;SQSTM1:5.1534 54 | 53 MAP1LC3C 0.1789 ATG5:6.5804;SQSTM1:5.37 55 | 54 IRGM 0.1782 STX17:6.8377;GABARAPL2:5.7525 56 | 55 TRIM55 0.1774 MAP1LC3A:6.3524;SQSTM1:5.1534 57 | 56 NBR1 0.1773 SQSTM1:6.0669;MAP1LC3A:5.7104 58 | 57 KAT2A 0.1769 ATG7:3.4667;ATG5:2.9419;SIRT1:1.7105;MTOR:0.5889 59 | 58 CASP8 0.1761 ATG3:2.8406;MAP1LC3A:1.4547;SQSTM1:1.3175;ATG7:1.2122;BECN1:0.8148;MTOR:0.0922 60 | 59 FUNDC1 0.174 MAP1LC3B:6.3444;ULK1:5.763 61 | 60 PINK1 0.1732 CALCOCO2:3.3991;BNIP3:1.4826;MAP1LC3A:1.328;BECN1:0.7299;SQSTM1:0.7202 62 | 61 HUWE1 0.1727 AMBRA1:5.5371;PINK1:2.2528;CASP3:1.3303 63 | 62 LAMP2 0.1725 ATG5:2.7402;MAP1LC3A:2.7333;BECN1:1.792 64 | 63 NSF 0.1694 GABARAP:6.0457;PIK3C3:5.3941 65 | 64 BCL2 0.1688 CASP3:2.2497;AMBRA1:1.4943;GABARAP:1.0447;MAP1LC3A:0.7107;BNIP3:0.4627;BAG3:0.4238;SQSTM1:0.348;SIRT1:0.149;MTOR:0.1009 66 | 65 SMCR8 0.1684 TFEB:7.7247;MTOR:3.2584 67 | 66 FOXO3 0.1662 BNIP3:1.9764;SIRT1:1.5247;ATG7:1.1673;MTOR:0.5233;PINK1:0.4748;CASP3:0.3934 68 | 67 MST1 0.1654 ATG16L1:4.1157;BECN1:2.07;SIRT1:0.8768;MTOR:0.6382 69 | 68 AKT1 0.1651 VMP1:1.262;ULK2:1.1834;UVRAG:0.8121;CASP3:0.5667;ULK1:0.5032;MAP1LC3B:0.3942;TFEB:0.3722;PINK1:0.292;BNIP3:0.2481 70 | 69 HSF1 0.1642 BAG3:2.6626;ATG7:1.81;SIRT1:1.0929;SQSTM1:0.774;CASP3:0.3954;MTOR:0.3234 71 | 70 RAB7 0.1611 PIK3C3:5.4435;LAMP2:5.1983 72 | 71 STX17 0.1575 IRGM:6.8377;MTOR:2.0216 73 | 72 YWHAZ 0.1571 PIK3C3:3.046;ULK1:2.4726;BAG3:2.2313 74 | 73 ATF6 0.1549 PIK3C3:3.267;ATF4:2.7028;CASP3:0.8312;MTOR:0.3901 75 | 74 ATF4 0.1545 ULK1:1.9402;ATG5:1.6601;SQSTM1:0.9416;SIRT1:0.7945;CASP3:0.4945;MTOR:0.4069 76 | 75 TP53 0.1528 ATG13:0.8319;ULK2:0.6483;RB1CC1:0.5399;SIRT1:0.4707;CASP3:0.4461;BNIP3L:0.3677;BNIP3:0.3234;GABARAP:0.3051;BECN1:0.2812 77 | 76 DDIT3 0.1519 MAP1LC3B:3.0401;TFEB:2.1325;BECN1:0.8416;CASP3:0.4284 78 | 77 BCL2L1 0.149 BECN1:2.2443;BNIP3:1.7064;CASP3:1.5824;BAG3:1.0158;MTOR:0.1006 79 | 78 BAX 0.1484 UVRAG:2.6648;DRAM1:2.5706;BECN1:0.7909;BNIP3:0.7339;MTOR:0.1173 80 | 79 DDIT4 0.1481 MTOR:3.1155;ATF4:2.3226;CASP3:1.0921 81 | 80 MIR34A 0.1476 ATG4B:4.8469;SIRT1:3.2282 82 | 81 USP9X 0.1476 BAG3:3.2903;SQSTM1:2.1729;MTOR:0.6968 83 | 82 TMEM173 0.1421 ULK1:3.0013;MAP1LC3A:1.8689;BECN1:1.1086 84 | 83 ATG2A 0.1418 ATG14:9.4418 85 | 84 BAG1 0.1375 BAG3:4.1566;CASP3:0.9968;MTOR:0.482 86 | 85 SLAMF1 0.1364 PIK3C3:4.3144;BECN1:2.2956 87 | 86 TBK1 0.1358 CALCOCO2:4.2302;SQSTM1:1.1405;MTOR:0.5123 88 | 87 CALCOCO2 0.135 PINK1:3.3991;BECN1:3.2923 89 | 88 EIF2AK3 0.1349 MAP1LC3B:2.6844;MAP1LC3A:1.8989;MTOR:0.6968 90 | 89 NRBF2 0.1345 ATG14:9.0274 91 | 90 EIF2A 0.1344 BECN1:2.5671;SIRT1:1.194;MTOR:0.8929 92 | 91 TBC1D14 0.1319 ULK1:7.9644 93 | 92 DENND3 0.1315 ULK1:7.5513 94 | 93 TMEM74 0.1311 ATG16L1:7.7187 95 | 94 DRAM1 0.1297 SQSTM1:3.7122;CASP3:2.6727 96 | 95 BECN2 0.1292 BECN1:7.2171 97 | 96 DVL2 0.1284 MAP1LC3A:3.0596;SQSTM1:2.0512 98 | 97 SPATA18 0.1275 BNIP3:6.8184 99 | 98 UBQLN2 0.1272 ATG5:3.5761;SQSTM1:2.4999 100 | 99 PTEN 0.1268 VMP1:1.5923;ULK2:1.5019;MTOR:0.9761;ATG7:0.4271;MAP1LC3A:0.296;SQSTM1:0.1343;CASP3:0.1199;SIRT1:0.037 101 | 100 FAM92B 0.1265 ATG16L1:7.3059 102 | 101 FYCO1 0.1261 MAP1LC3A:7.4136 103 | 102 AIFM1 0.1258 BNIP3:2.377;CASP3:1.5927;SIRT1:0.4879 104 | 103 PTK2 0.1255 AMBRA1:2.2017;BNIP3:0.8066;BAG3:0.7454;MTOR:0.4165;BECN1:0.3504;CASP3:0.1635 105 | 104 RAB11A 0.1252 ULK1:3.2018;ATG16L1:2.9839 106 | 105 CALR 0.1243 LAMP1:2.1981;LAMP2:1.8416;MAP1LC3A:1.2986 107 | 106 RAB12 0.1241 ULK1:6.3909 108 | 107 ATG10 0.1229 ATG5:6.003 109 | 108 STK4 0.1224 BECN1:1.792;CASP3:1.0533;MTOR:0.8929;SIRT1:0.7171 110 | 109 NFE2L2 0.1215 ATF4:1.3339;ATG5:0.7219;ATG7:0.5738;BAG3:0.429;PINK1:0.3847;SIRT1:0.3306;MTOR:0.1348;CASP3:0.086 111 | 110 BAG3 0.1207 SQSTM1:1.9763;BECN1:1.3177;CASP3:1.2037 112 | 111 KLHL20 0.1206 ULK1:6.7497 113 | 112 PRKAA2 0.1205 ULK1:3.4705;SIRT1:1.1112;MTOR:0.4709 114 | 113 LACRT 0.1195 ATG7:4.8822 115 | 114 ABCB9 0.1192 LAMP2:6.6582 116 | 115 NKX2-3 0.1192 ATG16L1:5.6813 117 | 116 PLEKHM1 0.1186 MAP1LC3A:5.9949 118 | 117 FLCN 0.1183 ULK1:3.2597;MTOR:1.5704 119 | 118 PRDM1 0.1178 ATG5:2.982;ULK1:2.0077 120 | 119 RPTOR 0.1174 ULK1:3.1068;BECN1:1.8128 121 | 120 MAPK14 0.1173 LAMP1:0.8627;ATF4:0.7417;LAMP2:0.6684;CASP3:0.651;ATG5:0.4166;PINK1:0.2111;BECN1:0.1955;MTOR:0.1715;SIRT1:0.1555 122 | 121 CAPN1 0.1167 CASP3:2.0053;ATG5:1.8699;SIRT1:0.3795 123 | 122 MIR30B 0.1165 ATG5:5.4824 124 | 123 TSC2 0.1164 ULK1:1.6905;ATG5:1.4309;SQSTM1:0.7847;SIRT1:0.2536 125 | 124 EIF4EBP1 0.1158 ATF4:1.5755;PINK1:1.2586;SQSTM1:1.177 126 | 125 HTT 0.1151 ULK1:1.0821;BAG3:0.9315;SQSTM1:0.7865;PINK1:0.4857;BECN1:0.4528;CASP3:0.2153;SIRT1:0.1328;MTOR:0.0897 127 | 126 HDAC6 0.1144 SQSTM1:2.1024;SIRT1:0.9077;BECN1:0.878;CASP3:0.4497 128 | 127 SESN2 0.1132 ULK1:3.5065;MTOR:1.4778 129 | 128 PAQR3 0.113 PIK3C3:5.2556 130 | 129 HSPA8 0.113 BAG3:3.1828;PINK1:1.4764 131 | 130 WIPI1 0.1126 MTOR:2.5262 132 | 131 DICER1 0.1117 CALCOCO2:3.0255;ATG5:1.0952 133 | 132 MAPK15 0.1115 MAP1LC3A:5.0973 134 | 133 MUL1 0.1108 ULK1:5.1913 135 | 134 PIK3R1 0.1102 MAP1LC3A:1.1897;MTOR:1.1149;BECN1:0.6402;SIRT1:0.3696 136 | 135 IRGM1 0.11 ATG16L1:4.1698 137 | 136 MIR30A 0.1097 BECN1:4.1227 138 | 137 CYBB 0.1093 PIK3C3:1.7595;MAP1LC3A:1.0923;BECN1:0.5788;SIRT1:0.1751;MTOR:0.1188 139 | 138 TRIM50 0.1092 SQSTM1:5.6272 140 | 139 PPP3CA 0.1089 ATG5:2.6024;PINK1:1.7601 141 | 140 MAGED1 0.1077 ULK1:4.1362 142 | 141 BSN 0.107 ATG16L1:4.7658 143 | 142 HSPB8 0.1068 SQSTM1:2.1567;MTOR:0.6889 144 | 143 EWSR1 0.1067 UVRAG:3.9283;CASP3:0.647 145 | 144 TRDMT1 0.1066 ATG5:4.8782 146 | 145 BAG2 0.1061 PINK1:5.1958 147 | 146 VDAC1 0.1059 SQSTM1:2.1567;PINK1:1.5409;MTOR:0.3852 148 | 147 MAPK8 0.1057 CASP3:0.9022;MAP1LC3A:0.6514;BECN1:0.5826;SIRT1:0.3336;SQSTM1:0.3157;MTOR:0.2826 149 | 148 IFNG 0.1053 ATG5:0.7451;IRGM:0.7045;LAMP1:0.6331;ATG16L1:0.584;ATG7:0.4212;MTOR:0.1401;BECN1:0.1345;SQSTM1:0.1323;CASP3:0.1181 150 | 149 NEDD4 0.1048 BECN1:1.3782;SQSTM1:1.363;MTOR:0.3541 151 | 150 KEAP1 0.1047 LAMP2:2.1532;MAP1LC3A:1.5598 152 | 151 GADD45A 0.1046 MAP1LC3A:2.1057;BECN1:1.2871;MTOR:0.3226 153 | 152 PML 0.1046 MAP1LC3A:1.2876;SQSTM1:1.1605;MTOR:0.629;SIRT1:0.578 154 | 153 TP53INP1 0.1044 MAP1LC3A:3.988 155 | 154 PDCD6IP 0.1038 ATG12:4.7923 156 | 155 ICAM2 0.1037 LAMP2:4.8087 157 | 156 BCL2L13 0.1034 CASP3:3.8521 158 | 157 VPS35 0.1032 LAMP2:3.9341 159 | 158 CTNS 0.1032 TFEB:4.5482 160 | 159 NOD2 0.1032 IRGM:3.4613;SQSTM1:0.3272;MTOR:0.0636 161 | 160 VPS33A 0.1031 MTOR:2.4018 162 | 161 ESRRA 0.1028 MAP1LC3B:2.9501;SIRT1:0.4705;MTOR:0.3295 163 | 162 OPRK1 0.1024 GABARAP:3.9046 164 | 163 HMGB1 0.102 RB1CC1:1.3409;SIRT1:0.574;ATG5:0.5647;MAP1LC3A:0.5621;BECN1:0.5012 165 | 164 PPP2R2A 0.1019 ULK1:4.1063 166 | 165 ATG4C 0.1018 MTOR:3.5498 167 | 166 HIF1A 0.1005 BNIP3L:0.7717;MTOR:0.6538;BECN1:0.459;SIRT1:0.258;BAG3:0.2441;MAP1LC3A:0.2288;PINK1:0.2174;CASP3:0.1774;SQSTM1:0.1025 168 | 167 PPP1R15A 0.1002 MTOR:1.8626;CASP3:1.4083 169 | 168 FUT1 0.1001 LAMP2:4.4485 170 | 169 CHDH 0.1 SQSTM1:4.0995 171 | 170 SNAPIN 0.0997 BECN1:3.0067 172 | 171 MAP4K3 0.0995 MTOR:3.1359 173 | 172 RICTOR 0.0991 PINK1:1.5972;BECN1:1.519 174 | 173 ZBTB38 0.099 CASP3:2.9487 175 | 174 BZW2 0.099 MTOR:3.2584 176 | 175 IL23R 0.099 IRGM:3.5034 177 | 176 ERN1 0.0982 ATG16L1:1.9289;BECN1:1.0701;MTOR:0.2525 178 | 177 LAMP3 0.098 ATF4:3.6464 179 | 178 MIR137 0.0971 CASP3:2.6727 180 | 179 HDAC1 0.0969 BNIP3:1.3228;ATF4:0.888;SIRT1:0.5182;MTOR:0.1321 181 | 180 NCOA4 0.0967 ATG5:4.0689 182 | 181 KDM3A 0.0965 BNIP3:3.5426 183 | 182 BANK1 0.0963 ATG5:4.0318 184 | 183 C9ORF72 0.0953 TFEB:2.0152;SQSTM1:1.2628;MTOR:0.1684 185 | 184 LAMTOR1 0.0951 MTOR:2.957 186 | 185 MFF 0.0949 SQSTM1:3.527 187 | 186 CASP12 0.0947 CASP3:3.1408 188 | 187 BBC3 0.0945 SQSTM1:0.9771;CASP3:0.5161;SIRT1:0.3306;MTOR:0.2282 189 | 188 ECM1 0.0944 ATG16L1:3.5435 190 | 189 CANX 0.0942 LAMP2:3.8962 191 | 190 KRAS 0.0939 ATG12:1.1148;TFEB:0.5278;BAG3:0.3269;MAP1LC3A:0.3069;BECN1:0.1419;SIRT1:0.1125;MTOR:0.0758 192 | 191 CAMKK2 0.0938 MTOR:1.6518;SIRT1:1.0519 193 | 192 MAP3K3 0.0936 SQSTM1:2.4552 194 | 193 CTSD 0.0935 LAMP2:2.4241;CASP3:0.9554 195 | 194 DCTN1 0.0934 PINK1:2.1324;MTOR:0.6251 196 | 195 MREG 0.0932 MTOR:2.2913 197 | 196 SERPINA1A 0.0931 SQSTM1:4.012 198 | 197 PPARGC1A 0.0921 TFEB:1.7261;PINK1:0.9104;SQSTM1:0.3397;MTOR:0.1902 199 | 198 VMP1 0.0914 SQSTM1:3.7122 200 | 199 SRC 0.0912 ATG9A:2.0669;ULK1:0.9295;MTOR:0.2089 201 | 200 ATP6V0A1 0.0908 MTOR:2.4018 -------------------------------------------------------------------------------- /Data/probe2gene.txt.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/allielarocco/Microarray-Analysis/2967d5124775ce217adfcfc24afce9c15d23daf1/Data/probe2gene.txt.zip -------------------------------------------------------------------------------- /Data/tagger_predictions.tsv: -------------------------------------------------------------------------------- 1 | Rank Gene Score Genes contributing most to score:similarity score 2 | 1 ATG12 1.719 ATG16L2:5.4463;ATG3:5.4417;ATG5:4.7774;WIPI2:4.7241;ATG2B:4.5125;ATG4A:4.4207;ATG16L1:4.3897;ATG7:4.2311;ATG4B:4.2078 3 | 2 ATG10 1.7017 ATG16L2:7.0786;ATG12:6.3567;ATG4A:6.2483;ATG3:6.2346;ATG4D:5.8169;ULK2:5.2447;IRGM:5.0128;ATG16L1:4.8602;ATG101:4.8095 4 | 3 ATG14 1.66 PIK3C3:6.0015;ATG13:5.8608;STX17:5.808;AMBRA1:5.4717;RB1CC1:5.3727;WIPI1:5.3719;ULK2:5.2284;ZFYVE1:5.0258;ATG4D:4.8262 5 | 4 WIPI1 1.6227 ATG101:5.7946;ATG2B:5.7782;ZFYVE1:5.457;ATG14:5.3719;ULK2:5.2556;ATG16L2:4.9564;RB1CC1:4.8319;ULK1:4.3559;ATG13:4.3512 6 | 5 ATG3 1.6089 ATG4D:5.9508;ATG4A:5.7151;ATG12:5.4417;ATG4B:4.9411;ATG7:4.7842;GABARAPL2:4.7692;GABARAPL1:4.6866;ATG14:4.4058;GABARAP:4.1988 7 | 6 ULK1 1.6 ATG13:5.9627;ULK2:5.8979;RB1CC1:5.1619;WIPI1:4.3559;ATG14:4.1684;ATG9A:4.0807;AMBRA1:4.06;WIPI2:3.9855;ATG4D:3.8269 8 | 7 RB1CC1 1.5817 ATG13:7.2952;ULK2:6.71;WIPI2:5.9958;ATG14:5.3727;ULK1:5.1619;WIPI1:4.8319;ATG4D:4.6398;ATG16L2:4.3454;ATG9A:4.196 9 | 8 GABARAP 1.5815 GABARAPL2:5.1631;GABARAPL1:4.9895;ATG4B:4.8796;ATG4D:4.7485;ATG101:4.3189;ATG3:4.1988;ATG10:4.0703;ATG13:3.6797;RB1CC1:3.5758 10 | 9 ATG13 1.5656 RB1CC1:7.2952;ULK2:7.2181;ULK1:5.9627;ATG14:5.8608;ATG4D:4.9344;ATG16L2:4.6374;ATG2B:4.4866;WIPI1:4.3512;AMBRA1:4.2156 11 | 10 GABARAPL1 1.5423 ATG4D:5.348;GABARAP:4.9895;ATG10:4.6975;ATG3:4.6866;ATG4B:4.6584;ATG101:4.3507;ATG4A:4.338;ATG12:4.1526;WIPI1:4.073 12 | 11 ATG5 1.5363 ATG10:4.55;ATG3:3.9951;ATG7:3.8366;ATG2B:3.7798;ATG4D:3.4289;ATG16L2:3.3881;ATG16L1:3.252;WIPI2:3.1796;ATG4B:3.0696 13 | 12 ATG4D 1.5035 ATG16L2:8.5208;ATG2B:8.3637;ATG4B:6.804;ATG9A:6.7875;ATG4C:6.7264;ULK2:6.259;ATG3:5.9508;ATG10:5.8169;AMBRA1:5.5212 14 | 13 GABARAPL2 1.4998 GABARAP:5.1631;ATG4D:4.8968;ATG4B:4.7926;ATG3:4.7692;ATG10:4.7175;ATG4A:4.609;ATG101:4.3705;WIPI2:4.3529;ATG12:4.0773 15 | 14 UVRAG 1.4987 AMBRA1:5.9741;PIK3C3:5.5684;ATG10:4.3264;ATG4A:4.2194;STX17:4.2048;ULK2:4.1975;RB1CC1:3.8807;ATG13:3.8656;ATG101:3.777 16 | 15 ATG16L1 1.4852 WIPI2:5.2266;ATG9A:4.9474;ATG10:4.8602;ATG4D:4.7816;ATG4A:4.6403;ATG16L2:4.4859;ATG12:4.3897;ATG2B:4.3358;ATG3:3.8712 17 | 16 MAP1LC3B 1.4774 MAP1LC3A:3.4702;ATG4A:3.4651;ATG4D:3.3067;ATG3:3.1631;ATG12:2.9631;SQSTM1:2.9057;BECN1:2.8766;ATG13:2.7658;ATG7:2.7559 18 | 17 ULK2 1.4699 ATG13:7.2181;RB1CC1:6.71;ATG4D:6.259;ATG16L2:5.9554;ULK1:5.8979;WIPI1:5.2556;ATG10:5.2447;ATG14:5.2284;AMBRA1:4.9518 19 | 18 ATG7 1.4378 ATG10:4.686;ATG12:4.2311;ATG5:3.8366;ATG4A:3.7938;ATG16L2:3.7852;ATG4B:3.4661;ATG4D:3.3921;GABARAPL2:2.9398;GABARAPL1:2.9066 20 | 19 ATG16L2 1.431 ATG2B:8.0566;ATG10:7.0786;ATG4A:6.9666;AMBRA1:6.201;ULK2:5.9554;IRGM:5.7209;ATG4C:5.6957;ATG9A:5.4985;ATG12:5.4463 21 | 20 ATG4B 1.366 ATG4D:6.804;ATG3:4.9411;GABARAP:4.8796;ULK2:4.8422;GABARAPL2:4.7926;GABARAPL1:4.6584;ATG16L2:4.5461;ATG4C:4.2425;ATG12:4.2078 22 | 21 ATG9A 1.3576 ATG4D:6.7875;ATG2B:6.3268;WIPI2:5.9675;ATG16L2:5.4985;ATG16L1:4.9474;ATG14:4.7773;WIPI1:4.2449;RB1CC1:4.196;ULK1:4.0807 23 | 22 AMBRA1 1.3499 UVRAG:5.9741;ATG4D:5.5212;ATG14:5.4717;ULK2:4.9518;PIK3C3:4.768;ATG13:4.2156;ULK1:4.06;ATG10:3.5813;BECN1:3.5615 24 | 23 BECN1 1.3287 UVRAG:3.6848;AMBRA1:3.5615;ATG12:3.1567;PIK3C3:3.1112;ATG5:3.0002;MAP1LC3B:2.8766;ATG7:2.8045;MAP1LC3A:2.7383;ATG10:2.7243 25 | 24 SQSTM1 1.3126 WDFY3:3.25;MAP1LC3B:2.9057;AMBRA1:2.7273;ATG10:2.5486;RB1CC1:2.5339;WIPI2:2.3942;ATG7:2.3452;ULK1:2.3109;ATG3:2.2654 26 | 25 MAP1LC3A 1.2924 ULK2:3.5135;ATG4D:3.5135;ATG10:3.4825;MAP1LC3B:3.4702;ATG3:3.3346;GABARAP:3.126;ATG4B:3.1099;ATG2B:3.0952;ATG12:2.9219 27 | 26 PIK3C3 1.2231 UVRAG:5.5684;AMBRA1:4.768;WIPI2:4.5286;WIPI1:4.3448;ATG13:3.9449;ATG101:3.5587;ULK2:3.4347;ZFYVE1:3.1115;BECN1:3.1112 28 | 27 WIPI2 1.1601 RB1CC1:5.9958;ATG9A:5.9675;ZFYVE1:5.9038;ATG16L1:5.2266;ULK2:4.875;ATG12:4.7241;NBR1:4.6798;PIK3C3:4.5286;ATG10:4.4439 29 | 28 IRGM 1.1112 ATG16L2:5.7209;ATG4D:5.4498;ATG10:5.0128;ATG4A:4.9036;ATG2B:4.0412;AMBRA1:3.242;ATG4C:3.1541;ATG3:3.0292;ULK2:3.0211 30 | 29 PIK3R4 1.0605 PIK3C3:6.8154;UVRAG:6.6019;AMBRA1:5.4814;ATG101:4.494;ZFYVE1:4.0235;ULK2:3.9724;WIPI1:3.9512;RB1CC1:3.9029;ATG13:3.6441 31 | 30 MAP1LC3C 1.0449 ATG16L2:6.9666;ATG4A:6.715;MAP1LC3A:6.6413;WDFY3:6.0625;GABARAPL2:5.895;ATG4B:5.8396;GABARAPL1:5.7768;GABARAP:5.744;CALCOCO2:5.3955 32 | 31 ATG4A 1.0448 ATG4B:7.6956;ATG16L2:6.9666;ATG9A:6.8104;ATG10:6.2483;ATG4C:6.171;ATG3:5.7151;GABARAP:5.1725;IRGM:4.9036;MAP1LC3A:4.8696 33 | 32 ATG4C 1.0356 ATG4A:6.171;ATG16L2:5.6957;ATG2B:4.9718;ATG4B:4.2425;ATG10:4.0327;ATG3:3.6158;IRGM:3.1541;ULK2:2.9987;WIPI1:2.9788 34 | 33 NBR1 1.0187 WIPI2:4.6798;SQSTM1:4.0547;CALCOCO2:3.9674;GABARAPL2:3.6639;GABARAPL1:3.6448;RB1CC1:3.5106;GABARAP:3.3744;ATG10:3.173;ATG9A:3.1582 35 | 34 ATG2B 0.9704 ATG16L2:8.0566;ATG10:7.6545;ATG9A:6.3268;WIPI1:5.7782;ATG4C:4.9718;ATG12:4.5125;ATG13:4.4866;ATG14:4.3797;ATG16L1:4.3358 36 | 35 ZFYVE1 0.9628 WIPI1:5.457;ATG14:5.0258;ULK2:4.205;ATG101:3.7843;ATG9A:3.7688;STX17:3.6657;WDFY3:3.6104;RB1CC1:3.5903;PIK3C3:3.1115 37 | 36 ATG101 0.9616 RB1CC1:8.3062;ULK2:7.5358;ULK1:6.1234;WIPI1:5.7946;ATG10:4.8095;ATG14:4.7934;GABARAPL2:4.3705;GABARAPL1:4.3507;GABARAP:4.3189 38 | 37 DRAM1 0.8921 ATG16L2:4.903;ULK2:3.6932;ATG3:3.4072;ATG13:3.3702;UVRAG:3.2043;ATG12:3.0247;AMBRA1:3.0167;IRGM:2.953;ATG4C:2.9306 39 | 38 ATG2A 0.8709 ATG4D:8.135;ATG4A:7.5756;WIPI1:7.1176;WIPI2:6.7285;ATG10:6.1169;ATG9A:6.1004;IRGM:5.7484;ATG14:5.1213;ZFYVE1:5.0583 40 | 39 BNIP3L 0.8563 ATG2B:3.4362;NBR1:3.1472;GABARAP:2.497;MAP1LC3A:2.4233;PINK1:2.2879;ATG4B:2.1086;STX17:2.0111;RB1CC1:1.9498;GABARAPL1:1.894 41 | 40 CD300C 0.8343 GABARAPL1:3.9434;GABARAPL2:3.9351;NBR1:3.8668;ATG13:3.1126;RB1CC1:2.8457;ATG101:2.7502;WDFY3:2.5914;MAP1LC3A:2.5486;WIPI2:2.4325 42 | 41 TFEB 0.8122 WIPI2:2.7913;ATG9A:2.7481;ULK2:2.6472;ATG13:2.0322;MAP1LC3A:1.9646;WIPI1:1.8445;SQSTM1:1.8358;LAMP2:1.7557;MAP1LC3B:1.7101 43 | 42 FYCO1 0.7907 WIPI1:4.6676;MAP1LC3A:4.4272;ATG4B:4.2607;GABARAP:4.1686;RB1CC1:4.0621;GABARAPL1:3.6057;ATG3:3.4573;MAP1LC3B:3.4235;BNIP3L:3.3079 44 | 43 SH3GLB1 0.7398 ATG10:5.7192;ATG13:4.8382;ATG9A:4.7302;IRGM:4.3875;ATG14:3.7836;RB1CC1:3.6049;ATG3:3.0179;PIK3C3:2.9762;GABARAP:2.8153 45 | 44 LAMP2 0.7349 ATG16L2:3.245;STX17:2.7792;ATG4D:2.6439;ATG14:1.8215;TFEB:1.7557;MAP1LC3B:1.6766;MAP1LC3A:1.6651;SQSTM1:1.6637;ATG12:1.6292 46 | 45 STX17 0.6969 UVRAG:4.2048;ZFYVE1:3.6657;LAMP2:2.7792;GABARAP:2.7616;ATG12:2.5969;IRGM:2.5287;GABARAPL1:2.2642;ATG3:2.1371;MAP1LC3B:2.1084 47 | 46 BNIP3 0.6895 ATG4B:2.4178;MAP1LC3A:2.2438;MAP1LC3B:2.0204;GABARAPL1:1.7727;BECN1:1.7664;ATG12:1.7502;PINK1:1.4779;ATG5:1.3898;GABARAP:1.2928 48 | 47 MAP1A 0.6589 WIPI2:3.0987;BECN1:2.5068;SQSTM1:2.3335;ATG12:2.1218;ATG5:2.1055;MAP1LC3B:2.0587;ULK1:2.0462;ATG7:2.0353;MAP1LC3A:1.919 49 | 48 RUBCN 0.65 ATG14:5.5167;AMBRA1:4.9832;PIK3C3:4.6489;WIPI2:4.5964;WDFY3:3.8331;STX17:2.9833;BECN1:2.6063;NBR1:2.4537;ATG13:2.3315 50 | 49 RAB7A 0.6383 UVRAG:2.2819;ATG9A:2.2053;LAMP2:2.1862;ATG16L2:2.0077;STX17:1.8103;PIK3C3:1.5571;GABARAP:1.3186;ATG4B:1.245;ATG3:1.173 51 | 50 PINK1 0.6041 AMBRA1:1.9718;STX17:1.8626;ATG16L2:1.7583;ATG9A:1.6491;NBR1:1.6491;BNIP3:1.4779;GABARAP:1.3307;CALCOCO2:1.2113;MAP1LC3B:1.2089 52 | 51 FUNDC1 0.5763 STX17:5.4732;BNIP3:4.5097;GABARAP:3.5959;RB1CC1:3.4925;ULK1:3.3816;MAP1LC3A:3.312;PINK1:3.3003;MAP1LC3B:2.8785;GABARAPL2:2.5694 53 | 52 PRKAA2 0.5686 ULK2:4.205;ATG14:3.7688;WIPI1:3.2608;NBR1:3.1007;ATG13:2.9682;RB1CC1:2.7053;ULK1:2.6025;SQSTM1:2.3014;PIK3C3:2.1365 54 | 53 PRR5 0.5373 UVRAG:5.1356;AMBRA1:4.9298;WIPI1:4.6676;ATG4B:4.2607;GABARAP:3.2467;TFEB:2.6282;ULK1:1.9581;ATG7:1.6219;MAP1LC3B:1.5587 55 | 54 LAMP1 0.5352 STX17:1.6253;TFEB:1.4622;ATG16L2:1.3264;ATG2B:1.2337;MAP1LC3B:1.1188;UVRAG:1.0504;SQSTM1:0.9864;ATG10:0.9348;ATG12:0.9018 56 | 55 PSMG1 0.533 ULK2:6.1296;IRGM:5.3217;WIPI1:5.1279;ATG13:4.8076;ATG14:4.6997;RB1CC1:4.514;PIK3C3:2.9486;ULK1:2.3261;MAP1LC3B:1.8903 57 | 56 WDFY3 0.5323 WIPI1:4.0827;ZFYVE1:3.6104;UVRAG:3.6031;SQSTM1:3.25;GABARAP:2.7105;ATG16L1:2.2589;ATG12:2.0804;PIK3C3:2.0546;MAP1LC3B:1.8244 58 | 57 CALCOCO2 0.5241 WIPI2:2.2604;GABARAPL2:2.0288;SQSTM1:1.9198;GABARAPL1:1.8199;GABARAP:1.4493;WIPI1:1.4107;ATG16L1:1.3649;PINK1:1.2113;ULK1:1.1218 59 | 58 PSMG2 0.52 ULK2:6.739;WIPI1:5.7302;ATG13:5.4063;ATG14:5.297;RB1CC1:5.1086;PIK3C3:3.4988;ULK1:2.8391;MAP1LC3B:2.3649;SQSTM1:2.3141 60 | 59 WDR45 0.4976 WIPI1:5.933;ATG16L2:5.911;ATG2B:5.7562;WIPI2:4.8315;RB1CC1:4.0411;ATG13:3.3999;GABARAPL1:2.2226;ULK1:1.9415;PIK3C3:1.7561 61 | 60 EPG5 0.4936 STX17:4.8949;RB1CC1:3.8661;ATG16L1:3.4632;VMP1:2.5362;TFEB:2.4547;ATG7:2.1998;ATG5:2.1134;GABARAPL2:2.0936;GABARAPL1:2.0777 62 | 61 TOMM20 0.4834 ZFYVE1:2.111;STX17:2.0752;AMBRA1:1.9449;BNIP3L:1.8408;NBR1:1.6246;ATG14:1.4522;MAP1LC3B:1.4292;BNIP3:1.3852;LAMP2:1.2218 63 | 62 PRKN 0.4801 AMBRA1:1.939;NBR1:1.4472;STX17:1.3775;BNIP3L:1.3614;ATG9A:1.1051;GABARAP:0.9653;WIPI2:0.9216;ZFYVE1:0.8682;BNIP3:0.8493 64 | 63 SNAP29 0.4585 ATG14:4.2883;NBR1:3.0731;UVRAG:2.7815;BNIP3L:2.0227;MAP1LC3B:1.5891;ULK1:1.5781;PIK3C3:1.4125;PINK1:1.2218;GABARAPL2:1.2018 65 | 64 VMP1 0.4584 ATG2B:2.8329;RB1CC1:2.4496;WIPI1:2.3682;ATG14:2.0223;ZFYVE1:1.9737;ATG9A:1.6048;AMBRA1:1.4199;NBR1:1.1538;ULK1:1.103 66 | 65 BAK1 0.4496 ATG4B:1.8916;ATG10:1.8916;BNIP3L:1.8704;AMBRA1:1.6776;IRGM:1.6279;BAG3:1.5916;DRAM1:1.4608;ATG3:1.3158;ATG12:1.3076 67 | 66 DRAM2 0.4425 ATG10:6.0356;UVRAG:4.9708;IRGM:4.6956;ATG3:4.2288;ATG12:3.2914;ULK1:2.6158;ATG7:2.2308;SQSTM1:2.108;BECN1:1.6928 68 | 67 HDAC6 0.435 ATG16L2:1.99;AMBRA1:1.2975;ATG13:1.2869;DRAM1:1.1124;ATG10:0.9249;ATG14:0.9171;STX17:0.8656;SQSTM1:0.8342;IRGM:0.7597 69 | 68 TAX1BP1 0.432 CALCOCO2:4.7993;ATG9A:3.829;GABARAP:2.8574;RB1CC1:2.7604;SQSTM1:2.3533;PINK1:1.6491;ATG16L1:1.6473;PIK3C3:1.4733;GABARAPL2:1.2569 70 | 69 TP53INP2 0.4258 GABARAPL2:2.9309;GABARAPL1:2.9128;VMP1:2.5525;BNIP3L:2.2936;MAP1LC3A:1.9991;ATG12:1.6633;PIK3C3:1.6403;ATG7:1.4965;BNIP3:1.2998 71 | 70 TIMM23B 0.4214 NBR1:6.8573;BNIP3L:5.5994;ATG16L1:4.9965;SQSTM1:4.383;MAP1LC3B:3.5081;PINK1:3.5016;BECN1:2.9446;MTOR:0.9768 72 | 71 ZKSCAN3 0.4132 ATG10:5.751;TFEB:5.7486;ATG12:3.9434;BAG3:3.4353;MAP1LC3B:2.7357;SQSTM1:1.891;ATG5:1.5186;BECN1:1.4992;LAMP1:1.476 73 | 72 RAB33B 0.4103 ATG14:4.3797;GABARAPL2:3.7558;GABARAPL1:3.7366;ATG3:3.587;ATG12:3.5744;ATG5:2.7355;MAP1LC3B:2.4044;ATG7:1.7193;SQSTM1:1.6112 74 | 73 PRR5L 0.4082 UVRAG:5.5403;GABARAP:4.5635;TFEB:3.8895;ULK1:3.1201;MAP1LC3B:2.6297;SQSTM1:2.5768;LAMP1:2.0931;MTOR:1.7741;BECN1:1.4194 75 | 74 TRIM63 0.3942 MAP1LC3B:1.5941;ATG13:1.3847;ATG4B:1.3266;ATG10:1.3266;GABARAPL1:1.2578;ATG12:1.1579;ULK1:1.1359;NBR1:0.9218;MAP1LC3A:0.8886 76 | 75 TECPR1 0.3937 ATG12:6.6423;WIPI1:6.6243;ATG16L1:6.1411;RB1CC1:5.9958;ATG5:4.9898;ULK1:3.6487 77 | 76 PLEKHM1 0.3844 UVRAG:4.2416;NBR1:3.6213;RB1CC1:3.2076;GABARAPL2:2.7964;GABARAPL1:2.7786;MAP1LC3B:2.0223;PIK3C3:1.8212;PINK1:1.6;SQSTM1:0.9833 78 | 77 BAG3 0.381 ATG14:1.8001;ATG3:1.6183;SQSTM1:1.4865;WIPI1:1.4262;NBR1:1.3159;RB1CC1:1.0603;ATG12:1.0181;BNIP3:0.9426;ATG7:0.7808 79 | 78 FOXO3 0.3656 BNIP3L:1.1095;RB1CC1:1.0151;ATG12:0.9342;SIRT1:0.9256;ATG101:0.838;MAP1LC3B:0.762;GABARAPL1:0.7188;ATG13:0.7058;ULK1:0.6727 80 | 79 FBXO32 0.3639 ATG4B:1.9814;MAP1LC3B:1.585;ATG12:1.3813;ATG13:1.3646;GABARAPL1:1.0761;ULK1:1.0654;STX17:0.9254;BNIP3L:0.5672;UVRAG:0.5479 81 | 80 RAB5A 0.3622 PIK3C3:2.1301;LAMP1:1.5662;LAMP2:1.4051;ATG14:1.2153;WIPI2:1.0192;UVRAG:0.9581;ATG9A:0.732;GABARAPL2:0.5721;WIPI1:0.5353 82 | 81 MTPAP 0.3615 ATG14:3.7542;ZFYVE1:3.6943;GABARAP:2.7881;CALCOCO2:2.4894;ATG12:2.1505;GABARAPL2:1.8594;GABARAPL1:1.8444;PINK1:1.2308;ATG5:0.9199 83 | 82 ATF6 0.3558 ATG4D:2.1051;ATG10:1.3856;ATG3:1.0757;ULK2:1.0709;ATG9A:0.8457;UVRAG:0.8139;ATG12:0.631;WIPI1:0.6246;DRAM1:0.6054 84 | 83 PIRT 0.3517 WIPI1:4.5635;ATG13:3.3222;ZFYVE1:3.164;UVRAG:3.157;RB1CC1:3.0501;PIK3C3:1.696;ULK1:1.2254;SQSTM1:0.8982;BECN1:0.3688 85 | 84 BCL2L13 0.3517 STX17:3.6804;BNIP3:3.0206;ATG4C:2.5594;GABARAP:2.007;MAP1LC3A:1.7788;ULK1:1.6097;PINK1:1.249;GABARAPL2:1.2287;GABARAPL1:1.2168 86 | 85 XBP1 0.3435 ULK2:1.2718;IRGM:1.2623;ATG16L1:1.1636;ATG10:1.026;ATG9A:1.0175;NBR1:0.6912;ATG13:0.6356;UVRAG:0.5724;ATG12:0.509 87 | 86 SMCR8 0.3352 WIPI2:6.7285;RB1CC1:4.9336;TFEB:4.3583;ULK1:4.1123;SQSTM1:3.002;LAMP1:1.725 88 | 87 COX4I1 0.3276 BNIP3:1.5482;ZFYVE1:1.4862;STX17:1.4563;TFEB:1.2384;ATG14:0.9577;PINK1:0.9367;MAP1LC3B:0.8612;ATG3:0.6076;ATG12:0.6029 89 | 88 PI3 0.325 WIPI1:2.275;PIK3C3:1.9637;ATG14:1.6109;WDFY3:1.4976;ZFYVE1:0.7962;UVRAG:0.7929;RB1CC1:0.743;ATG9A:0.598;ATG12:0.5102 90 | 89 ULK3 0.3232 RB1CC1:4.1498;ULK1:3.3552;ATG12:2.6494;LAMP2:2.225;ATG7:1.6854;SQSTM1:1.5785;ATG5:1.2435;BECN1:1.2264;MTOR:0.4722 91 | 90 MAD2L2 0.3206 ATG13:4.4866;RB1CC1:3.5106;WIPI1:2.6753;ZFYVE1:2.2598;UVRAG:2.2536;ULK1:1.8267;PIK3C3:1.0468;SQSTM1:0.4967;BECN1:0.1873 92 | 91 RETREG1 0.3181 STX17:2.8378;NBR1:2.318;ATG13:2.1986;GABARAP:2.0502;RB1CC1:1.9652;BNIP3L:1.4043;GABARAPL2:1.2618;GABARAPL1:1.2497;ULK1:0.617 93 | 92 DNM1L 0.3155 STX17:1.0566;BNIP3:0.982;AMBRA1:0.9692;BNIP3L:0.9013;WIPI1:0.8425;NBR1:0.7657;SQSTM1:0.736;MAP1LC3B:0.7068;ATG14:0.6631 94 | 93 MTOR 0.314 ULK2:0.7971;ATG13:0.7837;TFEB:0.6581;PIK3C3:0.6301;BECN1:0.5273;MAP1LC3B:0.5054;WIPI1:0.4941;ATG7:0.4221;ATG14:0.4156 95 | 94 RPTOR 0.3069 MTOR:1.5974;ATG13:1.4433;ULK1:1.3771;ATG9A:0.8443;AMBRA1:0.725;PIK3C3:0.7153;WIPI1:0.6235;ATG12:0.5241;ATG14:0.4831 96 | 95 RRAGC 0.3063 WIPI1:3.3961;ATG13:3.1001;RB1CC1:2.8335;GABARAP:2.109;PIK3C3:1.5285;MTOR:1.1859;ULK1:1.0882;SQSTM1:0.7881;LAMP1:0.5637 97 | 96 PIKFYVE 0.3051 WIPI2:3.4973;PIK3C3:2.8552;STX17:2.0235;NBR1:1.5789;ZFYVE1:1.3693;ATG12:1.2436;TFEB:0.9678;ATG3:0.9416;LAMP1:0.7466 98 | 97 DDIT4 0.3048 ATF4:1.5943;WIPI1:1.5575;DRAM1:1.5212;MTOR:1.3726;ATG4B:1.2906;BNIP3L:1.2735;ULK1:1.2498;ATG12:0.8377;MAP1LC3B:0.6956 99 | 98 SESN2 0.3043 STX17:2.5341;ULK1:1.9677;ATF4:1.7511;BNIP3:1.2882;BNIP3L:1.1911;SQSTM1:1.0523;MTOR:1.0332;TFEB:0.8049;PINK1:0.6399 100 | 99 BNIP1 0.3016 BNIP3:3.6846;BNIP3L:3.5301;BAG3:2.3218;LAMP2:1.6049;ATG7:1.1579;PINK1:1.1026;ATF4:0.9141;ATG5:0.8155;BECN1:0.8027 101 | 100 DVL2 0.3012 NBR1:1.667;ATG13:1.5653;ATG14:1.4921;GABARAP:1.4407;RB1CC1:1.3703;BNIP3L:0.925;GABARAPL1:0.809;ULK1:0.6623;SQSTM1:0.6452 102 | 101 EIF3F 0.2964 ATG12:2.4992;TFEB:1.7819;MAP1LC3B:1.5015;GABARAPL1:1.4609;LAMP2:1.3903;BNIP3:1.3615;ULK1:1.2375;ATG7:0.9839;SQSTM1:0.908 103 | 102 TIGAR 0.291 BNIP3L:2.1894;BNIP3:1.875;MAP1LC3A:1.2434;MAP1LC3B:1.116;ATG16L1:1.1107;ATG5:1.0185;ATG7:0.8727;LAMP2:0.7562;BECN1:0.7031 104 | 103 DEPTOR 0.2879 WIPI1:2.6182;ATG4B:2.2705;UVRAG:2.2001;MTOR:1.7848;GABARAP:1.4791;ULK1:1.1473;TFEB:1.0642;MAP1LC3B:0.4953;SQSTM1:0.4772 105 | 104 VAMP7 0.2873 ATG9A:2.5688;UVRAG:2.5086;LAMP1:1.7465;ATG16L1:1.3744;PIK3C3:1.2183;LAMP2:0.9608;ATG12:0.7477;GABARAPL2:0.6031;GABARAPL1:0.596 106 | 105 TUFM 0.2842 ATG12:3.2444;ATG16L1:2.9309;BNIP3L:2.6059;PINK1:2.1108;ATG5:1.6773;ULK1:1.4054;SQSTM1:1.0456;BECN1:0.4424 107 | 106 TBC1D5 0.2827 WIPI1:5.5532;GABARAPL2:3.9284;GABARAPL1:3.909;PIK3C3:3.3351;ULK1:2.6852 108 | 107 FNBP1L 0.281 ATG4A:5.219;IRGM:2.5942;ATG3:2.1984;CALCOCO2:1.7594;ATG16L1:1.6251;ATG5:0.9427;MAP1LC3B:0.7652;BECN1:0.2937;MTOR:0.0912 109 | 108 RAB24 0.2806 ATG9A:5.1213;GABARAP:3.1687;ULK1:1.8937;ATG7:1.5634;MAP1LC3B:1.5015;ATG5:1.142;LAMP1:1.1063 110 | 109 ULK4 0.2783 ATG16L2:7.458;RB1CC1:4.5754;GABARAPL1:2.6821;ULK1:2.3777;ATG7:2.008 111 | 110 EEA1 0.2754 LAMP2:2.7643;PIK3C3:2.4961;ATG14:1.8435;UVRAG:1.4011;WIPI1:1.1197;MAP1LC3A:0.7287;SQSTM1:0.5335;ATG16L1:0.3545;ULK1:0.3531 112 | 111 EVA1A 0.2744 ZFYVE1:3.0408;ATG16L1:1.7829;ATG12:1.6238;PIK3C3:1.6011;ATG7:1.4593;MAP1LC3B:1.3998;ATG5:1.0565;BECN1:0.6125;LAMP1:0.6001 113 | 112 MUL1 0.2718 ATG4B:1.3013;BNIP3L:1.2841;UVRAG:1.2488;GABARAPL1:1.1381;ULK1:1.113;PINK1:1.0652;ATG12:0.8457;MAP1LC3B:0.8353;GABARAP:0.7523 114 | 113 ZFYVE26 0.2704 UVRAG:4.9708;PIK3C3:3.261;MAP1LC3B:2.1568;SQSTM1:2.108;BECN1:1.9226;LAMP1:1.668 115 | 114 EIF4EBP1 0.2704 ULK1:1.0082;ATG13:0.7487;ATG12:0.6578;WIPI1:0.6512;PIK3C3:0.6455;ATG3:0.5525;MAP1LC3B:0.5407;ATG4B:0.5105;ATG7:0.4984 116 | 115 MTMR3 0.2688 ZFYVE1:4.2717;IRGM:3.9953;ATG16L1:2.8448;PIK3C3:2.6211;ULK1:2.0278;BECN1:0.7397 117 | 116 EIF2A 0.2684 MAP1LC3A:3.5135;ATG7:2.0587;MAP1LC3B:1.9873;PINK1:1.982;SQSTM1:1.9403;ATG5:1.5627;MTOR:0.8717;CASP3:0.2428 118 | 117 RAB33A 0.2665 ATG3:3.8964;ATG12:2.9781;GABARAPL2:2.6456;GABARAPL1:2.6281;SQSTM1:1.8444;ATG5:1.4772 119 | 118 TSC2 0.2662 ATG13:0.8733;ULK1:0.8674;ULK2:0.7728;PIK3C3:0.757;TFEB:0.6711;ATG14:0.5975;UVRAG:0.5733;RB1CC1:0.5347;AMBRA1:0.5071 120 | 119 FIS1 0.2657 BNIP3L:1.8464;STX17:1.7754;BNIP3:1.2979;MAP1LC3B:1.094;GABARAPL1:0.8596;ULK1:0.7058;GABARAP:0.6951;ATG5:0.5532;BECN1:0.5438 121 | 120 NLRX1 0.2649 UVRAG:2.9458;AMBRA1:2.7629;ATG12:1.968;IRGM:1.9073;ATG16L1:1.7121;ATG5:1.005;ATG7:0.4936;BECN1:0.454;SQSTM1:0.4495 122 | 121 PIM2 0.2632 ULK2:2.2705;WIPI1:1.5273;DRAM1:1.4915;ATG4B:1.2636;ATG4C:1.0437;ATG3:0.8236;ATG12:0.8177;ATG7:0.401;GABARAPL2:0.3689 123 | 122 BFAR 0.261 BNIP3:4.3931;BNIP3L:4.2331;BAG3:3.8579;LAMP2:2.9802;BECN1:1.1738;CASP3:0.1639 124 | 123 CCZ1 0.2579 GABARAP:3.5175;GABARAPL2:3.3648;GABARAPL1:3.346;MAP1LC3A:3.2351;PIK3C3:2.7959 125 | 124 CCZ1B 0.2579 GABARAP:3.5175;GABARAPL2:3.3648;GABARAPL1:3.346;MAP1LC3A:3.2351;PIK3C3:2.7959 126 | 125 TBK1 0.2552 CALCOCO2:1.7458;WIPI2:1.214;RB1CC1:1.0801;SQSTM1:0.8773;GABARAPL2:0.6194;NBR1:0.5943;GABARAPL1:0.5265;ULK1:0.4236;IRGM:0.413 127 | 126 LRRK2 0.2532 IRGM:1.2687;WDFY3:1.049;ULK2:0.873;ATG16L1:0.8298;ATG10:0.6863;ATG9A:0.68;DRAM1:0.4791;ULK1:0.4207;ATG3:0.4165 128 | 127 TM9SF1 0.2528 ATG12:4.0723;ATG7:2.9353;PINK1:2.8472;ATG5:2.3515;BECN1:1.5896 129 | 128 ATF4 0.252 ATG3:0.6873;ATG13:0.672;ATG5:0.631;MAP1LC3B:0.6185;ATG12:0.6125;MAP1LC3A:0.6064;UVRAG:0.6059;ATG7:0.5927;SQSTM1:0.5414 130 | 129 WDR45B 0.2506 WIPI1:7.617;RB1CC1:6.9845;ULK1:4.59;CASP3:0.5668 131 | 130 VAMP8 0.2502 ATG14:3.5292;UVRAG:1.8101;LAMP1:1.5743;LAMP2:1.3318;GABARAPL2:0.6366;GABARAPL1:0.6292;BNIP3:0.5749;MAP1LC3B:0.3625;SQSTM1:0.3487 132 | 131 MFN2 0.2471 BNIP3:1.1757;STX17:0.9748;AMBRA1:0.8923;BNIP3L:0.8283;MAP1LC3B:0.6974;ATG14:0.6055;ZFYVE1:0.5836;BECN1:0.5599;ULK1:0.5048 133 | 132 RPS6KB1 0.247 ULK1:0.7997;MAP1LC3B:0.6876;PIK3C3:0.6587;BECN1:0.607;WIPI1:0.5037;ATG5:0.4954;ATG12:0.4802;ATG7:0.464;BNIP3:0.4043 134 | 133 COX4I2 0.2467 ATG14:2.1377;ZFYVE1:2.0879;BNIP3:1.5333;GABARAP:1.3829;PINK1:1.0703;ATG12:0.9533;LAMP2:0.7246;MAP1LC3B:0.4525;ATG5:0.3136 135 | 134 EDEM1 0.2461 NBR1:3.3156;ATF4:2.2392;ATG3:1.6204;ATG5:1.2217;ATG7:0.898;GABARAPL2:0.8361;SQSTM1:0.827;GABARAPL1:0.827;CASP3:0.1043 136 | 135 RHEB 0.2454 MTOR:1.789;STX17:1.4488;RB1CC1:0.8616;ULK1:0.8079;MAP1LC3A:0.7753;BNIP3:0.7606;TFEB:0.6223;LAMP2:0.6209;SQSTM1:0.4726 137 | 136 SNX18 0.2431 ATG9A:5.8697;ATG14:4.8941;ATG16L1:4.8495;LAMP1:1.5656 138 | 137 UFM1 0.2393 ATG12:3.0933;ATG4B:2.9858;GABARAPL2:2.7566;GABARAPL1:2.7389;GABARAP:2.0824;CASP3:0.0327 139 | 138 VPS18 0.2393 UVRAG:3.001;WIPI1:2.5869;GABARAP:1.4552;TFEB:1.0448;LAMP1:1.0037;SQSTM1:0.8189;ULK1:0.6707;MAP1LC3B:0.4845;BECN1:0.1748 140 | 139 TBC1D25 0.2392 GABARAPL2:3.4335;GABARAPL1:3.4147;ATG16L1:2.5884;PIK3C3:2.3722;SQSTM1:2.0777 141 | 140 WDR41 0.2381 RB1CC1:5.4221;ULK1:4.0347;SQSTM1:3.4505;LAMP1:2.0931 142 | 141 TRIM16 0.2374 ATG16L1:3.2088;TFEB:3.0653;ULK1:2.3516;MAP1LC3B:1.9136;SQSTM1:1.2168;BECN1:0.5327 143 | 142 PTPN2 0.2364 STX17:1.8172;ATG16L1:1.7744;ULK2:1.5275;ATG10:1.2506;ATG14:0.75;UVRAG:0.7209;RB1CC1:0.6746;MAP1LC3A:0.3329;ATG12:0.2482 144 | 143 SEC24D 0.2351 WIPI1:4.2929;ZFYVE1:3.8158;GABARAPL2:1.9557;GABARAPL1:1.9403;ULK1:1.6774 145 | 144 ZFAND5 0.2351 UVRAG:4.8953;ATG12:3.2215;BNIP3:2.7262;SQSTM1:2.0484;BECN1:1.041 146 | 145 AKT1S1 0.2336 ULK1:1.4146;ATG13:1.379;UVRAG:1.2681;MTOR:1.1651;MAP1LC3B:0.8499;PIK3C3:0.8453;GABARAP:0.7658;TFEB:0.5134;ATG12:0.4934 147 | 146 TRIM6 0.2332 BNIP3L:7.1644;ULK1:5.5597;PINK1:4.9991 148 | 147 FEZ2 0.233 ATG16L1:4.5964;GABARAPL2:4.0103;GABARAPL1:3.9908;ATG5:2.6157 149 | 148 TRIM54 0.2324 ATG4B:3.096;UVRAG:3.0173;BNIP3:1.9153;ATG12:1.6111;SQSTM1:1.3493;MAP1LC3B:0.8549;BECN1:0.3346 150 | 149 HSPA5 0.2316 ATG13:0.8175;ATG12:0.53;ATG10:0.4934;MAP1LC3B:0.4895;ATG5:0.4585;BECN1:0.4355;ATG7:0.3559;ULK2:0.3543;MAP1LC3A:0.3432 151 | 150 FOXO1 0.2294 ATG2B:0.8875;SIRT1:0.8753;ATG101:0.6537;ATG14:0.5109;ATG3:0.3951;ATG7:0.3911;BNIP3:0.3667;ATG9A:0.3599;UVRAG:0.3441 152 | 151 KLHL20 0.2293 ATG14:5.6717;PIK3C3:4.4033;ULK1:3.7053;BECN1:1.4581 153 | 152 TFE3 0.2263 ATG9A:1.4345;WIPI1:1.1093;UVRAG:0.8556;SQSTM1:0.7709;ATG12:0.5547;GABARAP:0.4881;GABARAPL2:0.4418;GABARAPL1:0.4363;ATG5:0.3829 154 | 153 YKT6 0.2247 ATG14:3.604;GABARAPL2:1.7433;GABARAPL1:1.7287;ATG16L1:1.4861;PIK3C3:1.3223;MAP1LC3B:0.6822 155 | 154 ZBTB38 0.2237 ATG13:3.9808;RB1CC1:3.6965;ULK1:1.6774;MAP1LC3B:1.3118;ATF4:1.0956;CASP3:0.1265 156 | 155 RMC1 0.2219 MAP1LC3A:6.2083;GABARAPL2:5.3683;GABARAPL1:5.348 157 | 156 FKBP8 0.2213 MAP1LC3A:2.1265;GABARAP:1.6277;BNIP3:1.4016;PIK3C3:1.1302;PINK1:0.9658;GABARAPL2:0.9487;GABARAPL1:0.9387;MTOR:0.8152;CASP3:0.103 158 | 157 OPTN 0.2209 NBR1:1.5915;WIPI2:1.4531;SQSTM1:1.2228;ZFYVE1:0.618;PINK1:0.597;WIPI1:0.4648;GABARAPL2:0.4362;GABARAPL1:0.3674;RB1CC1:0.3156 159 | 158 TOMM70 0.2204 ATG14:2.2133;ZFYVE1:2.1627;PINK1:1.5659;GABARAP:1.4435;ATG12:1.001;BNIP3:0.7446;SQSTM1:0.4617;ATG5:0.3331;BECN1:0.1727 160 | 159 TRAPPC8 0.2203 RB1CC1:4.1052;GABARAPL2:3.667;GABARAPL1:3.6478;ULK1:1.9923 161 | 160 STRADA 0.2181 RB1CC1:2.7747;ATG3:2.2373;MAP1LC3B:1.2916;ULK1:1.0522;ATG5:0.9666;ATG7:0.8263;MTOR:0.4908;BECN1:0.303;SIRT1:0.1848 162 | 161 TP53BP2 0.2168 BAG3:1.9752;UVRAG:1.796;BNIP3:1.292;ATG3:1.2902;ATG12:0.779;PIK3C3:0.765;BECN1:0.4476;MAP1LC3B:0.3581;ATG5:0.2457 163 | 162 CISD2 0.2154 AMBRA1:3.7812;UVRAG:3.0677;BECN1:1.9954;ATG7:0.9249;MAP1LC3B:0.8808;ATG5:0.6365 164 | 163 UBE2K 0.2151 PINK1:1.3485;ATG3:0.9977;ATG4B:0.9313;ATG14:0.9234;ZFYVE1:0.8931;ATG12:0.5789;GABARAP:0.5099;GABARAPL2:0.4618;GABARAPL1:0.4562 165 | 164 CTSB 0.2137 ATG10:0.6692;TFEB:0.6426;ATG4A:0.6283;LAMP2:0.5337;ATG13:0.3953;ATG4B:0.373;ULK2:0.3432;ATG12:0.3422;LAMP1:0.3394 166 | 165 STK11 0.2132 UVRAG:0.7923;WIPI1:0.7634;RB1CC1:0.7424;ULK1:0.7308;ATG13:0.6365;SIRT1:0.511;ATG4C:0.4785;MTOR:0.4578;ATG4B:0.3329 167 | 166 KEAP1 0.2129 SQSTM1:1.4296;ATG16L2:1.4232;ATG101:1.0121;RB1CC1:0.5255;WIPI1:0.424;ATG3:0.3555;ATG13:0.3466;ATF4:0.3465;GABARAP:0.3076 168 | 167 TMEM74 0.2123 ATG16L1:4.2893;ULK1:3.3552;ATG5:2.3515;BECN1:1.5896 169 | 168 TRAPPC10 0.21 GABARAPL2:2.2216;GABARAPL1:2.2053;TFEB:1.8126;ULK1:1.2625;SQSTM1:0.9282;ATG5:0.6975 170 | 169 DAPK1 0.2096 UVRAG:1.2724;ATG4C:1.0985;DRAM1:0.9811;BNIP3L:0.7975;PIK3C3:0.6786;BAG3:0.6411;BNIP3:0.635;ATG3:0.4996;BECN1:0.4756 171 | 170 FNIP2 0.2085 GABARAP:3.739;ULK1:3.2318;MAP1LC3B:1.9375;SQSTM1:1.891;MTOR:0.6117 172 | 171 PEX3 0.2077 WIPI1:2.5792;RB1CC1:2.0706;GABARAPL2:2.0288;GABARAPL1:2.0132;ULK1:1.1218;SQSTM1:0.4642 173 | 172 TRIB3 0.2071 WIPI1:2.0621;BNIP3:0.9012;MAP1LC3B:0.815;SQSTM1:0.7881;ATG12:0.7165;ATG7:0.6235;LAMP2:0.5342;ULK1:0.4598;ATG5:0.4153 174 | 173 UBE2S 0.2068 STX17:1.2306;ATG3:0.8551;ATG4B:0.7957;ATG14:0.7887;ZFYVE1:0.7617;GABARAP:0.7553;GABARAPL2:0.5452;GABARAPL1:0.5387;ATG12:0.486 175 | 174 STK38 0.2064 ATG14:3.425;ATG12:1.8804;PIK3C3:1.8559;MAP1LC3B:1.0394;PINK1:1.0357;BECN1:0.7495 176 | 175 TMEM192 0.2058 ATG7:3.3921;MAP1LC3B:3.3067;LAMP1:2.7225;BECN1:1.9527 177 | 176 PGAM5 0.2053 PINK1:3.1445;BNIP3L:2.2036;BNIP3:1.8883;GABARAPL2:1.3395;GABARAPL1:1.327;MTOR:0.1024;CASP3:0.1018 178 | 177 RAB3GAP2 0.2043 ATG16L1:3.6548;GABARAPL2:3.0972;GABARAPL1:3.0788;ATG5:1.8338 179 | 178 PPP3CB 0.2039 BAG3:1.5938;TFEB:1.3504;ATG12:1.3096;BNIP3:0.9981;MAP1LC3B:0.6617;SQSTM1:0.6387;ATF4:0.5324;LAMP1:0.4503;BECN1:0.2483 180 | 179 PSMD14 0.2032 ATG14:2.3437;ZFYVE1:2.2918;GABARAP:1.5495;ATG12:1.0855;SQSTM1:0.8839;PINK1:0.5255;ATG5:0.3685;BECN1:0.1922;CASP3:0.0196 181 | 180 RAB11A 0.2032 LAMP1:1.1452;ATG14:0.9171;ATG9A:0.9171;UVRAG:0.8833;ATG16L1:0.7798;PIK3C3:0.4418;LAMP2:0.4231;GABARAPL1:0.352;MAP1LC3B:0.311 182 | 181 MAPK15 0.2027 GABARAP:2.4096;ULK1:1.975;MAP1LC3B:1.5737;SQSTM1:1.532;GABARAPL1:1.532;MTOR:0.1272;CASP3:0.0434 183 | 182 RABGEF1 0.2025 PIK3C3:2.6077;BNIP3L:2.0464;ATG16L1:1.6035;LAMP2:1.1451;BNIP3:1.1195;PINK1:0.7492;CASP3:0.0302 184 | 183 GIGYF2 0.2009 ATG13:3.3999;PINK1:2.7483;GABARAP:2.3731;ULK1:1.2753;BECN1:0.3887 185 | 184 CCPG1 0.2004 GABARAPL2:4.4028;GABARAPL1:4.383;GABARAP:3.6232 186 | 185 SNPH 0.2003 ATG4B:3.0634;ATG3:2.3346;BNIP3L:2.2036;BNIP3:1.2332;SQSTM1:0.8109;BECN1:0.327 187 | 186 PELI3 0.1982 ATG7:3.5947;MAP1LC3B:3.5081;SQSTM1:3.4505;MTOR:0.9768 188 | 187 BIRC6 0.197 GABARAP:1.6904;LAMP2:1.4893;BAG3:1.4701;GABARAPL1:0.9833;BNIP3:0.9067;MAP1LC3B:0.5949;CASP3:0.2879;BECN1:0.22;SIRT1:0.1327 189 | 188 NRBF2 0.1963 UVRAG:4.4606;PIK3C3:4.0749;BECN1:1.3482;ULK1:1.1268 190 | 189 BCL2L1 0.1961 UVRAG:0.5391;ATG4D:0.4801;ATG10:0.4706;CASP3:0.4624;BNIP3:0.4466;ATG13:0.4442;BNIP3L:0.4122;BECN1:0.3636;BAG3:0.3433 191 | 190 MFF 0.1953 ATG14:2.2351;PINK1:1.137;BNIP3L:0.9404;ULK1:0.6742;GABARAPL2:0.4751;GABARAPL1:0.4693;BNIP3:0.4268;ATG5:0.3388;MAP1LC3B:0.2641 192 | 191 VPS16 0.1943 UVRAG:4.9325;PIK3C3:2.3722;LAMP2:1.9927;LAMP1:1.0423 193 | 192 WDFY1 0.1932 LAMP2:3.728;TFEB:3.3524;MAP1LC3B:2.1568;BECN1:1.0817 194 | 193 HAGLROS 0.1931 ATG5:3.8756;BECN1:2.9446;MTOR:1.5539;CASP3:0.7151 195 | 194 BAX 0.1914 CASP3:0.8657;DRAM1:0.6227;MAP1LC3B:0.577;ZFYVE1:0.4797;UVRAG:0.4775;BNIP3:0.4679;ATF4:0.4616;BECN1:0.4595;SQSTM1:0.3779 196 | 195 TRAT1 0.1911 STX17:1.1027;ATG16L1:0.8484;NBR1:0.8024;ULK1:0.6759;UVRAG:0.6686;GABARAPL2:0.4765;GABARAPL1:0.4706;TFEB:0.4413;BNIP3L:0.3866 197 | 196 NOD2 0.191 IRGM:3.3813;ULK2:0.6553;ATG10:0.5071;ATG9A:0.5021;NBR1:0.3217;ULK1:0.3035;ATG14:0.2728;UVRAG:0.2605;RB1CC1:0.2412 198 | 197 MFN1 0.191 BNIP3:1.6217;MAP1LC3B:0.9328;ATG3:0.8297;BNIP3L:0.7597;BECN1:0.7524;ATG5:0.4848;ATG12:0.4699;SQSTM1:0.3674;SIRT1:0.2972 199 | 198 TSC1 0.1894 WIPI1:1.4203;MTOR:1.3829;UVRAG:1.1194;GABARAP:0.6628;MAP1LC3B:0.6177;BAG3:0.5494;ULK1:0.4816;TFEB:0.4392;BNIP3:0.2975 200 | 199 MAPKAP1 0.189 UVRAG:1.916;GABARAP:1.2506;MTOR:1.1043;TFEB:0.8811;PIK3C3:0.8356;ULK1:0.5546;MAP1LC3B:0.3962;SQSTM1:0.3813;LAMP1:0.2618 201 | 200 TECPR2 0.1885 SQSTM1:4.383;GABARAPL2:3.8515;GABARAPL1:3.8322 -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2019 allielarocco 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /Notebooks/Analysis from CSV to Clustergrammer Matrix.ipynb: -------------------------------------------------------------------------------- 1 | { 2 | "cells": [ 3 | { 4 | "cell_type": "code", 5 | "execution_count": null, 6 | "metadata": {}, 7 | "outputs": [], 8 | "source": [ 9 | "#Import required functions\n", 10 | "import GEOparse\n", 11 | "import pandas as pd\n", 12 | "import numpy as np\n", 13 | "import os\n", 14 | "import json\n", 15 | "from sklearn.preprocessing import quantile_transform\n", 16 | "from sklearn.decomposition import PCA\n", 17 | "import warnings\n", 18 | "from scipy.stats import chi2\n", 19 | "from scipy.stats.mstats import zscore\n", 20 | "import time\n", 21 | "#Time sleep to prevent crashes\n", 22 | "time.sleep(1)\n", 23 | "#Change this to your working directory\n", 24 | "os.chdir('../Data')\n", 25 | "os.chdir('../Scripts')\n", 26 | "from microarray_analysis import *" 27 | ] 28 | }, 29 | { 30 | "cell_type": "code", 31 | "execution_count": null, 32 | "metadata": {}, 33 | "outputs": [], 34 | "source": [ 35 | "#Read metadata file\n", 36 | "metadata = pd.read_csv('../Data/example_metadata.csv')\n", 37 | "metadata" 38 | ] 39 | }, 40 | { 41 | "cell_type": "markdown", 42 | "metadata": {}, 43 | "source": [ 44 | "## In the for loop below, please change the labels of your metadata to fit your csv" 45 | ] 46 | }, 47 | { 48 | "cell_type": "code", 49 | "execution_count": null, 50 | "metadata": { 51 | "scrolled": true 52 | }, 53 | "outputs": [], 54 | "source": [ 55 | "#Run analysis over studies in the metadata file, printing a list of the up and down genes\n", 56 | "up_data = {}\n", 57 | "dn_data = {}\n", 58 | "for i in range(0,len(metadata.index)):\n", 59 | " accession_id = metadata.iloc[i]['GEO Accession Number']\n", 60 | " control_samples = metadata.iloc[i]['Control Samples']\n", 61 | " treated_samples = metadata.iloc[i]['Treated Samples']\n", 62 | " cell_type = str(metadata.iloc[i]['Cell Type'])\n", 63 | " phys = str(metadata.iloc[i]['Altered Condition'])\n", 64 | " drug = str(metadata.iloc[i]['Drug Name'])\n", 65 | " gene = str(metadata.iloc[i]['Name of the Perturbed Gene'])\n", 66 | " gene_type = str(metadata.iloc[i]['Gene Alteration'])\n", 67 | " platform = str(metadata.iloc[i]['GEO Platform'])\n", 68 | " metadata_list = [platform, cell_type, phys, drug, gene, gene_type]\n", 69 | " control_samples = control_samples.split(',')\n", 70 | " control_samples = [c.strip(' ') for c in control_samples]\n", 71 | " treated_samples = treated_samples.split(',')\n", 72 | " treated_samples = [t.strip(' ') for t in treated_samples]\n", 73 | " DEGs = micro_analysis(accession_id, control_samples, treated_samples)\n", 74 | " up_genes, dn_genes = DEGs\n", 75 | " up_data[accession_id + ' ' + str(metadata_list) + ' up'] = up_genes\n", 76 | " dn_data[accession_id + str(metadata_list) + ' dn'] = dn_genes\n", 77 | " print(up_data, dn_data)" 78 | ] 79 | }, 80 | { 81 | "cell_type": "code", 82 | "execution_count": null, 83 | "metadata": {}, 84 | "outputs": [], 85 | "source": [ 86 | "#Define Jaccard Index function from Megan's code\n", 87 | "def jaccardIndex(listA,listB):\n", 88 | " intersection = len(set(listA) & set(listB))\n", 89 | " JI = intersection/(len(listA)+len(listB)-intersection)\n", 90 | " return(JI)" 91 | ] 92 | }, 93 | { 94 | "cell_type": "code", 95 | "execution_count": null, 96 | "metadata": {}, 97 | "outputs": [], 98 | "source": [ 99 | "#Merged up and down data\n", 100 | "all_data = merge(up_data, dn_data)\n", 101 | "all_data" 102 | ] 103 | }, 104 | { 105 | "cell_type": "code", 106 | "execution_count": null, 107 | "metadata": {}, 108 | "outputs": [], 109 | "source": [ 110 | "#Extract labels from lists of up/down genes\n", 111 | "all_terms = [k for k,v in all_data.items()] " 112 | ] 113 | }, 114 | { 115 | "cell_type": "code", 116 | "execution_count": null, 117 | "metadata": {}, 118 | "outputs": [], 119 | "source": [ 120 | "#Set up matrix store the calculations of the Jaccard indices\n", 121 | "matrix = []\n", 122 | "\n", 123 | "for term1 in all_terms:\n", 124 | " geneset1 = all_data[term1]\n", 125 | " row = []\n", 126 | " for term2 in all_terms:\n", 127 | " geneset2 = all_data[term2]\n", 128 | " sim_score = jaccardIndex(geneset1,geneset2)\n", 129 | " row.append(sim_score)\n", 130 | " matrix.append(row) " 131 | ] 132 | }, 133 | { 134 | "cell_type": "code", 135 | "execution_count": null, 136 | "metadata": {}, 137 | "outputs": [], 138 | "source": [ 139 | "# Final version of the desired format of labels\n", 140 | "final_terms = []\n", 141 | "for term in all_terms:\n", 142 | " accession = term.split('[')[0].strip()\n", 143 | " platform = term.split('[')[1].split(', ')[0].replace(\"'\",'')\n", 144 | " cell_line = term.split('[')[1].split(', ')[1].replace(\"'\",'')\n", 145 | " physical_alt = term.split('[')[1].split(', ')[2].replace(\"'\",'')\n", 146 | " chemical_alt = term.split('[')[1].split(', ')[3].replace(\"'\",'')\n", 147 | " genetic_alt = term.split('[')[1].split(', ')[4].replace(\"'\",'')\n", 148 | " genetic_alt_type = term.split('[')[1].split(', ')[5].split(']')[0].replace(\"'\",'')\n", 149 | " updown = term.split('] ')[1]\n", 150 | "#Customize which categories of metadata to include on the labels\n", 151 | " final_terms.append(list(['Accession: ' + str(accession), 'Cell Line: ' + str(cell_line), 'Up/Down: ' + str(updown),\n", 152 | " 'Platform: ' + str(platform), 'Physical Alteration: ' + str(physical_alt),\n", 153 | " 'Chemical Alteration: ' + str(chemical_alt), 'Genetic Alteration: ' + str(genetic_alt) + str(genetic_alt_type)])) \n", 154 | " " 155 | ] 156 | }, 157 | { 158 | "cell_type": "code", 159 | "execution_count": null, 160 | "metadata": {}, 161 | "outputs": [], 162 | "source": [ 163 | "#Visualize labels\n", 164 | "final_terms" 165 | ] 166 | }, 167 | { 168 | "cell_type": "code", 169 | "execution_count": null, 170 | "metadata": {}, 171 | "outputs": [], 172 | "source": [ 173 | "#Make a tab-delimited file\n", 174 | "clustergrammer_output = open('../jaccard_clustergrammer_autophagy.tsv','w')\n", 175 | "#Number of categories of metadata used, e.g. Accession ID, Cell Line, or Up/Down\n", 176 | "categories = 7\n", 177 | "#Shift columns to make room for row labels and write columns\n", 178 | "for cat in range(0,categories):\n", 179 | " clustergrammer_output.write('\\t'*categories + '\\t'.join([x[cat] for x in final_terms]) + '\\n')\n", 180 | "#Write rows and input jaccard indices \n", 181 | "for i in range(0, len(matrix)):\n", 182 | " clustergrammer_output.write(final_terms[i][0] + '\\t' + final_terms[i][1] + '\\t' + final_terms[i][2] + '\\t' + final_terms[i][3] + '\\t'+ final_terms[i][4] + '\\t'+ final_terms[i][5] + '\\t'+ final_terms[i][6] + '\\t' + '\\t'.join([str(x) for x in matrix[i]]) + '\\n')\n", 183 | "\n", 184 | "clustergrammer_output.close()" 185 | ] 186 | } 187 | ], 188 | "metadata": { 189 | "kernelspec": { 190 | "display_name": "Python 3", 191 | "language": "python", 192 | "name": "python3" 193 | }, 194 | "language_info": { 195 | "codemirror_mode": { 196 | "name": "ipython", 197 | "version": 3 198 | }, 199 | "file_extension": ".py", 200 | "mimetype": "text/x-python", 201 | "name": "python", 202 | "nbconvert_exporter": "python", 203 | "pygments_lexer": "ipython3", 204 | "version": "3.6.8" 205 | } 206 | }, 207 | "nbformat": 4, 208 | "nbformat_minor": 2 209 | } 210 | -------------------------------------------------------------------------------- /Notebooks/Analysis from CSV to GMT.ipynb: -------------------------------------------------------------------------------- 1 | { 2 | "cells": [ 3 | { 4 | "cell_type": "code", 5 | "execution_count": null, 6 | "metadata": {}, 7 | "outputs": [], 8 | "source": [ 9 | "#Import required functions\n", 10 | "import GEOparse\n", 11 | "import pandas as pd\n", 12 | "import numpy as np\n", 13 | "import os\n", 14 | "import json\n", 15 | "from sklearn.preprocessing import quantile_transform\n", 16 | "from sklearn.decomposition import PCA\n", 17 | "import warnings\n", 18 | "from scipy.stats import chi2\n", 19 | "from scipy.stats.mstats import zscore\n", 20 | "import time\n", 21 | "#Time sleep to prevent crashes\n", 22 | "time.sleep(1)\n", 23 | "#Change this to your working directory\n", 24 | "os.chdir('../Data')\n", 25 | "os.chdir('../Scripts')\n", 26 | "from microarray_analysis import *" 27 | ] 28 | }, 29 | { 30 | "cell_type": "code", 31 | "execution_count": null, 32 | "metadata": {}, 33 | "outputs": [], 34 | "source": [ 35 | "#Read metadata file\n", 36 | "metadata = pd.read_csv('../Data/example_metadata.csv')\n", 37 | "metadata" 38 | ] 39 | }, 40 | { 41 | "cell_type": "markdown", 42 | "metadata": {}, 43 | "source": [ 44 | "## In the for loop below, please change the labels of your metadata to fit your csv" 45 | ] 46 | }, 47 | { 48 | "cell_type": "code", 49 | "execution_count": null, 50 | "metadata": { 51 | "scrolled": true 52 | }, 53 | "outputs": [], 54 | "source": [ 55 | "#Run analysis over studies in the metadata file, printing a list of the up and down genes\n", 56 | "up_data = {}\n", 57 | "dn_data = {}\n", 58 | "for i in range(0,len(metadata.index)):\n", 59 | " accession_id = metadata.iloc[i]['GEO Accession Number']\n", 60 | " control_samples = metadata.iloc[i]['Control Samples']\n", 61 | " treated_samples = metadata.iloc[i]['Treated Samples']\n", 62 | " cell_type = str(metadata.iloc[i]['Cell Type'])\n", 63 | " phys = str(metadata.iloc[i]['Altered Condition'])\n", 64 | " drug = str(metadata.iloc[i]['Drug Name'])\n", 65 | " gene = str(metadata.iloc[i]['Name of the Perturbed Gene'])\n", 66 | " gene_type = str(metadata.iloc[i]['Gene Alteration'])\n", 67 | " platform = str(metadata.iloc[i]['GEO Platform'])\n", 68 | " metadata_list = [platform, cell_type, phys, drug, gene, gene_type]\n", 69 | " control_samples = control_samples.split(',')\n", 70 | " control_samples = [c.strip(' ') for c in control_samples]\n", 71 | " treated_samples = treated_samples.split(',')\n", 72 | " treated_samples = [t.strip(' ') for t in treated_samples]\n", 73 | " DEGs = micro_analysis(accession_id, control_samples, treated_samples)\n", 74 | " up_genes, dn_genes = DEGs\n", 75 | " up_data[accession_id + ' ' + str(metadata_list) + ' up'] = up_genes\n", 76 | " dn_data[accession_id + str(metadata_list) + ' dn'] = dn_genes\n", 77 | " print(up_data, dn_data)" 78 | ] 79 | }, 80 | { 81 | "cell_type": "code", 82 | "execution_count": null, 83 | "metadata": {}, 84 | "outputs": [], 85 | "source": [ 86 | "#Merged up and down data\n", 87 | "updn_data = merge(up_data, dn_data)\n", 88 | "#Extract labels from lists of up/down genes\n", 89 | "updn_terms = [k for k,v in updn_data.items()]\n", 90 | "#Extract gene sets\n", 91 | "updnval = [updn_data[k] for k in updn_terms]" 92 | ] 93 | }, 94 | { 95 | "cell_type": "code", 96 | "execution_count": null, 97 | "metadata": {}, 98 | "outputs": [], 99 | "source": [ 100 | "#Final version of the desired format of labels\n", 101 | "final_terms = []\n", 102 | "for term in updn_terms:\n", 103 | " accession = term.split('[')[0].strip()\n", 104 | " platform = term.split('[')[1].split(', ')[0].replace(\"'\",'')\n", 105 | " cell_type = term.split('[')[1].split(', ')[1].replace(\"'\",'')\n", 106 | " physical_alt = term.split('[')[1].split(', ')[2].replace(\"'\",'')\n", 107 | " chemical_alt = term.split('[')[1].split(', ')[3].replace(\"'\",'')\n", 108 | " genetic_alt = term.split('[')[1].split(', ')[4].replace(\"'\",'')\n", 109 | " genetic_alt_type = term.split('[')[1].split(', ')[5].split(']')[0].replace(\"'\",'')\n", 110 | " effect = term.split(']')[0].split(', ')[6].replace(\"'\",'')\n", 111 | " updown = term.split('] ')[1].replace(\"'\",'')\n", 112 | "#Customize which categories of metadata to include on the labels\n", 113 | " final_terms.append(str([str(accession), str(effect), str(updown)]))" 114 | ] 115 | }, 116 | { 117 | "cell_type": "code", 118 | "execution_count": null, 119 | "metadata": {}, 120 | "outputs": [], 121 | "source": [ 122 | "#Make new dictionary with the updated labels\n", 123 | "micro_data = dict(zip(final_terms, updnval))" 124 | ] 125 | }, 126 | { 127 | "cell_type": "code", 128 | "execution_count": null, 129 | "metadata": {}, 130 | "outputs": [], 131 | "source": [ 132 | "#Upload genes from autophagy geneshot search and sort by count*frac\n", 133 | "geneshot = pd.read_csv('geneshot_genes.tsv', sep = '\\t')\n", 134 | "geneshot['count*frac'] = [geneshot['Publication count'].iloc[i] * geneshot['Fraction of publications from total gene publication'].iloc[i] for i in range(0,len(geneshot))]\n", 135 | "geneshot = geneshot.sort_values(by=['count*frac'], ascending = False)\n", 136 | "geneshot_list = list(geneshot['Gene'])[:300]\n", 137 | "#Put geneshot results into dictionary\n", 138 | "geneshot_dict = {}\n", 139 | "geneshot_dict[str(['Geneshot Autophagy Search', 'nan', 'nan'])] = geneshot_list\n", 140 | "\n", 141 | "#Upload predicted genes from autophagy geneshot search and make dictionaries\n", 142 | "geneshot1 = pd.read_csv('autorif_predictions.tsv', sep = '\\t')\n", 143 | "geneshot_list1 = list(geneshot1['Gene'])\n", 144 | "geneshot_dict1 = {}\n", 145 | "geneshot_dict1[str(['Geneshot AutoRif Predictions', 'nan', 'nan'])] = geneshot_list1\n", 146 | "\n", 147 | "geneshot2 = pd.read_csv('generif_predictions.tsv', sep = '\\t')\n", 148 | "geneshot_list2 = list(geneshot2['Gene'])\n", 149 | "geneshot_dict2 = {}\n", 150 | "geneshot_dict2[str(['Geneshot GeneRif Predictions', 'nan', 'nan'])] = geneshot_list2\n", 151 | "\n", 152 | "geneshot3 = pd.read_csv('enrichr_predictions.tsv', sep = '\\t')\n", 153 | "geneshot_list3 = list(geneshot3['Gene'])\n", 154 | "geneshot_dict3 = {}\n", 155 | "geneshot_dict3[str(['Geneshot Enrichr Predictions', 'nan', 'nan'])] = geneshot_list3\n", 156 | "\n", 157 | "geneshot4 = pd.read_csv('tagger_predictions.tsv', sep = '\\t')\n", 158 | "geneshot_list4 = list(geneshot4['Gene'])\n", 159 | "geneshot_dict4 = {}\n", 160 | "geneshot_dict4[str(['Geneshot Tagger Predictions', 'nan', 'nan'])] = geneshot_list4\n", 161 | "\n", 162 | "geneshot5 = pd.read_csv('archs4_predictions.tsv', sep = '\\t')\n", 163 | "geneshot_list5 = list(geneshot5['Gene'])\n", 164 | "geneshot_dict5 = {}\n", 165 | "geneshot_dict5[str(['Geneshot ARCHS4 Predictions', 'nan', 'nan'])] = geneshot_list5\n", 166 | "\n", 167 | "#Merge all geneshot dictionaries\n", 168 | "geneshot01 = merge(geneshot_dict, geneshot_dict1)\n", 169 | "geneshot23 = merge(geneshot_dict2, geneshot_dict3)\n", 170 | "geneshot45 = merge(geneshot_dict4, geneshot_dict5)\n", 171 | "geneshot03 = merge(geneshot01, geneshot23)\n", 172 | "all_geneshot = merge(geneshot03, geneshot45)\n" 173 | ] 174 | }, 175 | { 176 | "cell_type": "code", 177 | "execution_count": null, 178 | "metadata": {}, 179 | "outputs": [], 180 | "source": [ 181 | "#Upload 3 sets if DEG from most relevant biojupies studies\n", 182 | "biojupies1 = pd.read_csv('../Data/biojupies_genes1.tsv', sep = '\\t')\n", 183 | "biojupies2 = pd.read_csv('../Data/biojupies_genes2.tsv', sep = '\\t')\n", 184 | "biojupies3 = pd.read_csv('../Data/biojupies_genes3.tsv', sep = '\\t')\n", 185 | "\n", 186 | "#Sort into up and down sets\n", 187 | "biojupies1_up = biojupies1[biojupies1['Up/Down'] == 'up']\n", 188 | "biojupies1_dn = biojupies1[biojupies1['Up/Down'] != 'up']\n", 189 | "biojupies2_up = biojupies2[biojupies2['Up/Down'] == 'up']\n", 190 | "biojupies2_dn = biojupies2[biojupies2['Up/Down'] != 'up']\n", 191 | "biojupies3_up = biojupies3[biojupies3['Up/Down'] == 'up']\n", 192 | "biojupies3_dn = biojupies3[biojupies3['Up/Down'] != 'up']\n", 193 | "\n", 194 | "#Make gene sets\n", 195 | "bio1_up_list = list(biojupies1_up['Gene'])\n", 196 | "bio1_dn_list = list(biojupies1_dn['Gene'])\n", 197 | "bio2_up_list = list(biojupies2_up['Gene'])\n", 198 | "bio2_dn_list = list(biojupies2_dn['Gene'])\n", 199 | "bio3_up_list = list(biojupies3_up['Gene'])\n", 200 | "bio3_dn_list = list(biojupies3_dn['Gene'])\n", 201 | "\n", 202 | "#Make dictionaries for each gene set\n", 203 | "bio1up = {}\n", 204 | "bio1up[str(['GSE89672', 'Activate', 'up'])] = bio1_up_list\n", 205 | "bio1dn = {}\n", 206 | "bio1dn[str(['GSE89672', 'Activate', 'dn'])] = bio1_dn_list\n", 207 | "bio2up = {}\n", 208 | "bio2up[str(['GSE100888', 'Inhibit', 'up'])] = bio2_up_list\n", 209 | "bio2dn = {}\n", 210 | "bio2dn[str(['GSE100888', 'Inhibit', 'dn'])] = bio2_dn_list\n", 211 | "bio3up = {}\n", 212 | "bio3up[str(['GSE72091', 'Activate', 'up'])] = bio3_up_list\n", 213 | "bio3dn = {}\n", 214 | "bio3dn[str(['GSE72091', 'Activate', 'dn'])] = bio3_dn_list\n", 215 | "\n", 216 | "#Merge all biojupies dictionaries\n", 217 | "bio1 = merge(bio1up, bio1dn)\n", 218 | "bio2 = merge(bio2up, bio2dn)\n", 219 | "bio3 = merge(bio3up, bio3dn)\n", 220 | "bio12 = merge(bio1, bio2)\n", 221 | "biojupies = merge(bio12, bio3)" 222 | ] 223 | }, 224 | { 225 | "cell_type": "code", 226 | "execution_count": null, 227 | "metadata": {}, 228 | "outputs": [], 229 | "source": [ 230 | "#Merge biojupies and geneshot dictionaries\n", 231 | "bio_geneshot = merge(biojupies, all_geneshot)\n", 232 | "#Merge biojupies, geneshot, and microarray dictionaries\n", 233 | "biogsmicro_data = merge(bio_geneshot, micro_data)" 234 | ] 235 | }, 236 | { 237 | "cell_type": "code", 238 | "execution_count": null, 239 | "metadata": {}, 240 | "outputs": [], 241 | "source": [ 242 | "#Parse gene list from Harmonizome's json of GO Biological Process Annotation for autophagy\n", 243 | "url1 = 'https://amp.pharm.mssm.edu/Harmonizome/api/1.0/gene_set/autophagy/GO+Biological+Process+Annotations'\n", 244 | "page1 = re.get(url1)\n", 245 | "soup1 = str(BeautifulSoup(page1.text, 'html.parser'))\n", 246 | "data1 = json.loads(soup1)\n", 247 | "list1 = data1['associations']\n", 248 | "gene_list1 = []\n", 249 | "for i in range(1, (len(list1))):\n", 250 | " dict1a = list1[i-1]\n", 251 | " dict2a = list1[i]\n", 252 | " dict3a = merge(dict1a, dict2a)\n", 253 | " gene_list1.append(dict3a['gene']['symbol'])\n", 254 | "gene_dict1 = {}\n", 255 | "gene_dict1[str(['Gene Ontology', 'nan', 'nan'])] = gene_list1\n", 256 | "\n", 257 | "#Parse gene list from Harmonizome's json of Kegg Pathways for autophagy\n", 258 | "url2 = 'https://amp.pharm.mssm.edu/Harmonizome/api/1.0/gene_set/regulation+of+autophagy/KEGG+Pathways'\n", 259 | "page2 = re.get(url2)\n", 260 | "soup2 = str(BeautifulSoup(page2.text, 'html.parser'))\n", 261 | "data2 = json.loads(soup2)\n", 262 | "list2 = data2['associations']\n", 263 | "gene_list2 = []\n", 264 | "for i in range(1, (len(list2))):\n", 265 | " dict1b = list2[i-1]\n", 266 | " dict2b = list2[i]\n", 267 | " dict3b = merge(dict1b, dict2b)\n", 268 | " gene_list2.append(dict3b['gene']['symbol'])\n", 269 | "gene_dict2 = {}\n", 270 | "gene_dict2[str(['KEGG Pathways', 'nan', 'nan'])] = gene_list2\n", 271 | "\n", 272 | "#Parse gene list from Harmonizome's json of Wikipathways for autophagy\n", 273 | "url3 = 'https://amp.pharm.mssm.edu/Harmonizome/api/1.0/gene_set/Senescence+and+Autophagy%28Homo+sapiens%29/Wikipathways+Pathways'\n", 274 | "page3 = re.get(url3)\n", 275 | "soup3 = str(BeautifulSoup(page3.text, 'html.parser'))\n", 276 | "data3 = json.loads(soup3)\n", 277 | "list3 = data3['associations']\n", 278 | "gene_list3 = []\n", 279 | "for i in range(1, (len(list3))):\n", 280 | " dict1c = list3[i-1]\n", 281 | " dict2c = list3[i]\n", 282 | " dict3c = merge(dict1c, dict2c)\n", 283 | " gene_list3.append(dict3c['gene']['symbol'])\n", 284 | "gene_dict3 = {}\n", 285 | "gene_dict3[str(['Wikipathways', 'nan', 'nan'])] = gene_list3\n", 286 | "\n", 287 | "#Merge Harmonizome dictionaries\n", 288 | "gene_dict12 = merge(gene_dict1, gene_dict2)\n", 289 | "lit_dict = merge(gene_dict12, gene_dict3)" 290 | ] 291 | }, 292 | { 293 | "cell_type": "code", 294 | "execution_count": null, 295 | "metadata": {}, 296 | "outputs": [], 297 | "source": [ 298 | "#Upload CREEDS-generated up/down gene lists from GSE41018\n", 299 | "rapamycin = pd.read_csv('../Data/creeds_rapamycin.tsv', sep='\\t')\n", 300 | "rapamycin_up = rapamycin[rapamycin['Up/Down'] == 'up']\n", 301 | "rapamycin_dn = rapamycin[rapamycin['Up/Down'] != 'up']\n", 302 | "\n", 303 | "#Make rapamycin dictionaries\n", 304 | "rapamycin_up_list = list(rapamycin_up['Gene'])\n", 305 | "rapamycin_dict_up = {}\n", 306 | "rapamycin_dict_up[str(['CREEDS Rapamycin Search', 'nan', 'up'])] = rapamycin_up_list\n", 307 | "rapamycin_dn_list = list(rapamycin_dn['Gene'])\n", 308 | "rapamycin_dict_dn = {}\n", 309 | "rapamycin_dict_dn[str(['CREEDS Rapamycin Search', 'nan', 'dn'])] = rapamycin_dn_list\n", 310 | "#Merge rapamycin dictionaries\n", 311 | "rapamycin_dict = merge(rapamycin_dict_up, rapamycin_dict_dn)" 312 | ] 313 | }, 314 | { 315 | "cell_type": "code", 316 | "execution_count": null, 317 | "metadata": {}, 318 | "outputs": [], 319 | "source": [ 320 | "#Merge biojupies, microarray, geneshot, and Harmonizome dictionaries\n", 321 | "almost_all_data = merge(biogsmicro_data, lit_dict)\n", 322 | "\n", 323 | "#Merge biojupies, microarray, geneshot, Harmonizome, and Rapamycin dictionaries\n", 324 | "all_data = merge(almost_all_data, rapamycin_dict)\n", 325 | "\n", 326 | "#Extract labels from dictionaries\n", 327 | "data_terms = [k for k,v in all_data.items()]\n", 328 | "data_vals = [all_data[k] for k in data_terms]" 329 | ] 330 | }, 331 | { 332 | "cell_type": "code", 333 | "execution_count": null, 334 | "metadata": {}, 335 | "outputs": [], 336 | "source": [ 337 | "#Preliminary dataframe of data\n", 338 | "all_datadf = pd.DataFrame.from_dict(all_data, orient = 'index')\n", 339 | "all_datadf.reset_index(inplace=True)" 340 | ] 341 | }, 342 | { 343 | "cell_type": "code", 344 | "execution_count": null, 345 | "metadata": {}, 346 | "outputs": [], 347 | "source": [ 348 | "#Make new labels for gmt file\n", 349 | "gmt_terms = []\n", 350 | "for term in data_terms:\n", 351 | " accession = term.split('[')[1].split(', ')[0].replace(\"'\",'')\n", 352 | " effect = term.split('[')[1].split(', ')[1].replace(\"'\",'')\n", 353 | " updown = term.split(', ')[2].split(']')[0].replace(\"'\",'')\n", 354 | "#Customize which categories of metadata to include on the labels\n", 355 | " gmt_terms.append(list([str(accession), str(effect), str(updown)]))" 356 | ] 357 | }, 358 | { 359 | "cell_type": "code", 360 | "execution_count": null, 361 | "metadata": {}, 362 | "outputs": [], 363 | "source": [ 364 | "#Make dictionary of desired metadata to merge with preliminary data df\n", 365 | "gmt_df = pd.DataFrame(gmt_terms, columns=[\"ID\", \"Effect\", \"Up/Down\"])" 366 | ] 367 | }, 368 | { 369 | "cell_type": "code", 370 | "execution_count": null, 371 | "metadata": {}, 372 | "outputs": [], 373 | "source": [ 374 | "#Concatenate dataframes, adding metadata and setting ID as index\n", 375 | "main_df = pd.concat([gmt_df, all_datadf], axis=1)\n", 376 | "main_df = main_df.drop('index', axis=1)\n", 377 | "main_df = main_df.set_index('ID')" 378 | ] 379 | }, 380 | { 381 | "cell_type": "code", 382 | "execution_count": null, 383 | "metadata": {}, 384 | "outputs": [], 385 | "source": [ 386 | "#Send dataframe to tsv file\n", 387 | "all_autophagy_file = ('../autophagy_data.gmt')\n", 388 | "main_df.to_csv(all_autophagy_file, sep = '\\t')" 389 | ] 390 | } 391 | ], 392 | "metadata": { 393 | "kernelspec": { 394 | "display_name": "Python 3", 395 | "language": "python", 396 | "name": "python3" 397 | }, 398 | "language_info": { 399 | "codemirror_mode": { 400 | "name": "ipython", 401 | "version": 3 402 | }, 403 | "file_extension": ".py", 404 | "mimetype": "text/x-python", 405 | "name": "python", 406 | "nbconvert_exporter": "python", 407 | "pygments_lexer": "ipython3", 408 | "version": "3.6.8" 409 | } 410 | }, 411 | "nbformat": 4, 412 | "nbformat_minor": 2 413 | } 414 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Microarray Analysis Pipeline in Python 2 | 3 | Abstract: Autophagy is a catabolic pathway in which cytoplasmic vesicles engulf long-lived cellular components to transport them to the lysosome for digestion. Autophagy is a critical process for maintaining cell homeostasis, and stress-inducing conditions inhibit or activate autophagy, which can lead to a wide range of pathologies. Utilizing the NIH Gene Expression Omnibus (GEO) database to obtain gene expression data from autophagy-related studies, I have constructed an analysis pipeline in Jupyter Notebook to determine differentially expressed genes (DEGs). With the user's input of the GEO accession ID and control and treated samples, or a file with relevant metadata, the pipeline performs normalization, dimensionality reduction, and the Characteristic Direction method to generate lists of upregulated and downregulated genes. The gene sets from over 100 studies were compiled with sets from databases including Gene Ontology and KEGG pathways; studies with significant overlap with these resources were utilized to determine a more extensive genetic signature for autophagy. Once the consensus signature was generated, the data was imported into the L1000FWD web application to establish novel drugs that could induce autophagy. Since autophagy is linked to conditions such as cancer and neurodegeneration, targeting this pathway could transform established treatments for disease. 4 | 5 | ### Documentation: 6 | 7 | Data: 8 | - RNA-seq data extracted from BioJupies (3) 9 | - Rapamycin gene signature from CREEDS 10 | - Autophagy gene signature predictions from Geneshot (6) 11 | - example_metadata.csv: Example of metadata, focused on autophagy 12 | - probe2gene.txt.zip: Text file used to map microarray probes to gene symbols 13 | 14 | Notebooks: 15 | - Analysis from CSV to Clustergrammer Matrix.ipynb: Takes CSV of GEO metadata, performs differential expression analysis, and exports as Jaccard similarity matrix (for Clustergrammer heatmap visualization) 16 | - Analysis from CSV to GMT.ipynb: Takes CSV of GEO metadata, performs differential expression analysis and exports as GMT file 17 | - Microarray Analysis Single Study.ipynb: Takes user input of accession id and control and treated samples to perform differential and enrichment analysis on gene expression data 18 | 19 | Scripts: 20 | - microarray_analysis_function.py: Function for performing microarray analysis, returns lists of up- and down-regulated genes 21 | -------------------------------------------------------------------------------- /Scripts/microarray_analysis.py: -------------------------------------------------------------------------------- 1 | #Import required functions 2 | import GEOparse 3 | import pandas as pd 4 | import numpy as np 5 | import os 6 | import json 7 | from sklearn.preprocessing import quantile_transform 8 | from sklearn.decomposition import PCA 9 | import warnings 10 | from scipy.stats import chi2 11 | from scipy.stats.mstats import zscore 12 | import time 13 | 14 | #Time sleep to prevent crashes 15 | time.sleep(1) 16 | #Change this to your working directory 17 | os.chdir('../Data') 18 | 19 | 20 | #Define merge function for combining sample lists 21 | def merge(dict1, dict2): 22 | res = {**dict1, **dict2} 23 | return res 24 | 25 | #Define probe_dict 26 | def probe_dict(probe2gene_file): 27 | dict1 = {} 28 | with open(probe2gene_file, 'r') as f: 29 | for line in f: 30 | line = line.strip() 31 | (platform, probe, symbol) = line.split() 32 | dict1[probe] = symbol 33 | return dict1 34 | 35 | PROBE2GENE = probe_dict('../Data/probe2gene.txt') 36 | 37 | #Define characteristic direction function 38 | def chdir(data, sampleclass, genes, gamma=1., sort=True, calculate_sig=False, nnull=10, sig_only=False, norm_vector=True): 39 | data.astype(float) 40 | #sampleclass = np.array(map(int, sampleclass)) 41 | m_non0 = sampleclass != 0 42 | m1 = sampleclass[m_non0] == 1 43 | m2 = sampleclass[m_non0] == 2 44 | 45 | data = data[:, m_non0] 46 | data = zscore(data) 47 | 48 | n1 = m1.sum() # number of controls 49 | n2 = m2.sum() # number of experiments 50 | 51 | meanvec = data[:,m2].mean(axis=1) - data[:,m1].mean(axis=1) 52 | 53 | pca = PCA(n_components=None) 54 | pca.fit(np.array(data.T)) 55 | 56 | cumsum = pca.explained_variance_ratio_ 57 | keepPC = len(cumsum[cumsum > 0.001]) 58 | 59 | v = pca.components_[0:keepPC].T 60 | r = pca.transform(data.T)[:,0:keepPC] 61 | dd = ( np.dot(r[m1].T,r[m1]) + np.dot(r[m2].T,r[m2]) ) / float(n1+n2-2) 62 | sigma = np.mean(np.diag(dd)) 63 | 64 | shrunkMats = np.linalg.inv(gamma*dd + sigma*(1-gamma)*np.eye(keepPC)) 65 | b = np.dot(v, np.dot(np.dot(v.T, meanvec), shrunkMats)) 66 | 67 | if norm_vector: 68 | b /= np.linalg.norm(b) 69 | 70 | grouped = zip([abs(item) for item in b],b,genes) 71 | if sort: 72 | grouped = sorted(grouped,key=lambda x: x[0], reverse=True) 73 | 74 | if not calculate_sig: # return sorted b and genes. 75 | res = [(item[1],item[2]) for item in grouped] 76 | return res 77 | else: # generate a null distribution of chdirs 78 | nu = n1 + n2 - 2 79 | y1 = np.random.multivariate_normal(np.zeros(keepPC), dd, nnull).T * np.sqrt(nu / chi2.rvs(nu,size=nnull)) 80 | y2 = np.random.multivariate_normal(np.zeros(keepPC), dd, nnull).T * np.sqrt(nu / chi2.rvs(nu,size=nnull)) 81 | y = y2 - y1 82 | 83 | nullchdirs = [] 84 | for col in y.T: 85 | bn = np.dot(np.dot(np.dot(v,shrunkMats), v.T), np.dot(col,v.T)) 86 | bn /= np.linalg.norm(bn) 87 | bn = bn ** 2 88 | bn.sort() 89 | bn = bn[::-1] ## sort in decending order 90 | nullchdirs.append(bn) 91 | 92 | nullchdirs = np.array(nullchdirs).T 93 | nullchdirs = nullchdirs.mean(axis=1) 94 | b_s = b ** 2 95 | b_s.sort() 96 | b_s = b_s[::-1] # sorted b in decending order 97 | relerr = b_s / nullchdirs ## relative error 98 | # ratio_to_null 99 | ratios = np.cumsum(relerr)/np.sum(relerr)- np.linspace(1./len(meanvec),1,len(meanvec)) 100 | res = [(item[1],item[2], ratio) for item, ratio in zip(grouped, ratios)] 101 | print('Number of significant genes: %s'%(np.argmax(ratios)+1)) 102 | if sig_only: 103 | return res[0:np.argmax(ratios)+1] 104 | else: 105 | return res 106 | 107 | 108 | #Microarray Analysis Pipeline 109 | def micro_analysis(accession_id, control_samples, treated_samples): 110 | #Creating a dictionary of assigned control and treated samples 111 | 112 | control_samples = { i : 'control' for i in control_samples } 113 | treated_samples = { i : 'treated' for i in treated_samples } 114 | all_samples = merge(control_samples, treated_samples) 115 | 116 | #Parse the GEO data using the Accession ID 117 | gse = GEOparse.get_GEO(geo=accession_id, destdir="./") 118 | #Create a list of samples to use in the development of the expression matrix 119 | list_samples = list(all_samples.keys()) 120 | 121 | #Visualization of expression matrix 122 | pivoted_samples = gse.pivot_samples('VALUE')[list_samples] 123 | pivoted_samples.head() 124 | #Determine the total amount of probes used in the study 125 | pivoted_samples_average = pivoted_samples.median(axis=1) 126 | #Filtering out unexpressed probes 127 | expression_threshold = pivoted_samples_average.quantile(0.3) 128 | expressed_probes = pivoted_samples_average[pivoted_samples_average >= expression_threshold].index.tolist() 129 | 130 | #Redefine expression data using only the expressed probes 131 | exprsdata = gse.pivot_samples("VALUE").loc[expressed_probes] 132 | exprsdata = exprsdata.T 133 | #Deletes additional samples that aren't being analyzed 134 | exprsdata = exprsdata[exprsdata.index.isin(list_samples)] 135 | #Drop any probe columns where expression data is missing or negative 136 | exprsdata.dropna(axis = 1) 137 | 138 | #Quantile normalization of data 139 | rank_mean = exprsdata.stack().groupby(exprsdata.rank(method='first').stack().astype(int)).mean() 140 | exprsdata.rank(method='min').stack().astype(int).map(rank_mean).unstack().dropna(axis=1) 141 | #Making Dataframe of samples 142 | samplesDf = pd.DataFrame.from_dict(all_samples, orient = 'index', columns = ['type']) 143 | samplesDf.reset_index(inplace=True) 144 | 145 | #Transpose data matrix for sorting, index correlated to probe IDs 146 | exprsdata = exprsdata.T 147 | #Upload annotation file as dictionary 148 | 149 | #Reset index and replace with gene symbols, view as dataframe 150 | exprsdata = pd.DataFrame(exprsdata) 151 | exprsdata.index = exprsdata.index.astype(str, copy=False) 152 | exprsdata['symbol'] = exprsdata.index.to_series().map(PROBE2GENE) 153 | exprsdata.reset_index(inplace=True) 154 | data = exprsdata.set_index('symbol') 155 | 156 | #Drop probe id column 157 | data = data.drop('ID_REF', axis=1) 158 | #Drop rows that aren't associated with a particular gene symbol 159 | data = data.reset_index().dropna().set_index('symbol') 160 | 161 | #Utilize warning statements 162 | warnings.filterwarnings("ignore", category=DeprecationWarning) 163 | warnings.filterwarnings("ignore", category=RuntimeWarning) 164 | 165 | #Make sample classes, ensure that there is a distinction between control/treated samples 166 | data_cd = {} 167 | sample_classes = {} 168 | sample_class = np.zeros(data.shape[1], dtype=np.int32) 169 | sample_class[samplesDf['type'].values == 'control'] = 1 170 | sample_class[samplesDf['type'].values == 'treated'] = 2 171 | sample_classes = sample_class 172 | 173 | #CD results 174 | cd_res = chdir(data.values, sample_classes, data.index, gamma=.5, sort=False, calculate_sig=False) 175 | cd_coefs = np.array(list(map(lambda x: x[0], cd_res))) 176 | srt_idx = np.abs(cd_coefs).argsort()[::-1] 177 | cd_coefs = cd_coefs[srt_idx][:600] 178 | sorted_DEGs = data.index[srt_idx][:600] 179 | up_genes = dict(zip(sorted_DEGs[cd_coefs > 0], cd_coefs[cd_coefs > 0])) 180 | dn_genes = dict(zip(sorted_DEGs[cd_coefs < 0], cd_coefs[cd_coefs < 0])) 181 | data_cd['up'] = up_genes 182 | data_cd['dn'] = dn_genes 183 | 184 | #Retrieve up and down gene sets 185 | up_list = list(up_genes.keys()) 186 | dn_list = list(dn_genes.keys()) 187 | #Up genes and down genes 188 | return up_list, dn_list 189 | --------------------------------------------------------------------------------