├── .dockerignore ├── .flake8 ├── .github ├── codeql │ └── config.yml ├── dependabot.yml ├── kind │ └── config.yaml └── workflows │ ├── ci-tests.yaml │ └── release.yml ├── .gitignore ├── CITATION.cff ├── CONTRIBUTING.md ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── antlr4-generator.sh ├── codecov.yml ├── cwl-conformance-test.sh ├── docs ├── .wci.yml ├── Makefile ├── logo.png ├── make.bat └── source │ ├── _static │ └── theme_overrides.css │ ├── advanced │ ├── multiple-targets.rst │ ├── port-targets.rst │ └── stacked-locations.rst │ ├── conf.py │ ├── connector │ ├── container.rst │ ├── docker-compose.rst │ ├── docker.rst │ ├── flux.rst │ ├── helm3.rst │ ├── kubernetes.rst │ ├── occam.rst │ ├── pbs.rst │ ├── queue-manager.rst │ ├── singularity.rst │ ├── slurm.rst │ └── ssh.rst │ ├── cwl │ ├── cwl-conformance.rst │ ├── cwl-runner.rst │ ├── docker-requirement.rst │ └── docker │ │ ├── docker.rst │ │ ├── kubernetes.rst │ │ ├── no-container.rst │ │ └── singularity.rst │ ├── ext │ ├── binding-filter.rst │ ├── connector.rst │ ├── cwl-docker-translator.rst │ ├── data-manager.rst │ ├── database.rst │ ├── deployment-manager.rst │ ├── fault-tolerance.rst │ ├── plugins.rst │ └── scheduling.rst │ ├── guide │ ├── architecture.rst │ ├── bind.rst │ ├── cwl.rst │ ├── deployments.rst │ ├── inspect.rst │ ├── install.rst │ └── run.rst │ ├── images │ ├── streamflow-model.png │ └── streamflow_logo.png │ └── index.rst ├── examples ├── failure │ ├── cwl │ │ ├── clt │ │ │ ├── combit.cwl │ │ │ ├── find.cwl │ │ │ ├── openit.cwl │ │ │ ├── scatter.cwl │ │ │ └── sumit.cwl │ │ ├── config.yml │ │ ├── data │ │ │ ├── extra_nums │ │ │ │ ├── extra0.txt │ │ │ │ ├── extra1.txt │ │ │ │ └── extra2.txt │ │ │ └── num_file.txt │ │ ├── main.cwl │ │ └── master.cwl │ ├── environment │ │ └── helm │ │ │ └── failure │ │ │ ├── Chart.yaml │ │ │ ├── _helmignore │ │ │ ├── templates │ │ │ ├── _helpers.tpl │ │ │ └── deployment.yaml │ │ │ └── values.yaml │ └── streamflow.yml ├── flux │ ├── Dockerfile │ ├── README.md │ ├── cwl │ │ ├── clt │ │ │ ├── compile.cwl │ │ │ └── execute.cwl │ │ ├── config.yml │ │ ├── data │ │ │ └── cs.cxx │ │ └── main.cwl │ └── streamflow.yml ├── mpi │ ├── cwl │ │ ├── clt │ │ │ ├── compile.cwl │ │ │ └── execute.cwl │ │ ├── config.yml │ │ ├── data │ │ │ └── cs.cxx │ │ └── main.cwl │ ├── environment │ │ ├── docker-compose │ │ │ ├── docker-compose.yml │ │ │ ├── id_rsa │ │ │ └── id_rsa.pub │ │ ├── helm │ │ │ └── openmpi │ │ │ │ ├── Chart.yaml │ │ │ │ ├── _helmignore │ │ │ │ ├── templates │ │ │ │ ├── _helpers.tpl │ │ │ │ ├── deployment.yaml │ │ │ │ └── secrets.yaml │ │ │ │ └── values.yaml │ │ └── k8s │ │ │ ├── deployment.yaml │ │ │ └── secrets.yaml │ └── streamflow.yml └── munipack │ ├── cwl │ ├── clt │ │ ├── aperture_photometry.cwl │ │ ├── astrometry.cwl │ │ ├── combine.cwl │ │ ├── cone_search.cwl │ │ ├── dark.cwl │ │ ├── find.cwl │ │ ├── find_star.cwl │ │ ├── flat.cwl │ │ ├── flattening.cwl │ │ ├── photo_correction.cwl │ │ └── scatter.cwl │ ├── config.yml │ ├── download_data.sh │ ├── main.cwl │ ├── master.cwl │ ├── pre_correction.cwl │ └── stack.cwl │ ├── environment │ ├── helm │ │ └── stacking │ │ │ ├── Chart.yaml │ │ │ ├── _helmignore │ │ │ ├── templates │ │ │ ├── _helpers.tpl │ │ │ └── deployment.yaml │ │ │ └── values.yaml │ └── occam │ │ └── occamfile.yml │ └── streamflow.yml ├── helm └── chart │ ├── .helmignore │ ├── Chart.yaml │ ├── templates │ ├── NOTES.txt │ ├── _helpers.tpl │ ├── job.yaml │ └── serviceaccount.yaml │ └── values.yaml ├── pyproject.toml ├── requirements.txt ├── streamflow ├── __init__.py ├── __main__.py ├── config │ ├── __init__.py │ ├── config.py │ ├── schema.py │ ├── schemas │ │ └── v1.0 │ │ │ └── config_schema.json │ └── validator.py ├── core │ ├── __init__.py │ ├── asyncache.py │ ├── config.py │ ├── context.py │ ├── data.py │ ├── deployment.py │ ├── exception.py │ ├── persistence.py │ ├── processor.py │ ├── provenance.py │ ├── recovery.py │ ├── scheduling.py │ ├── utils.py │ └── workflow.py ├── cwl │ ├── __init__.py │ ├── antlr │ │ ├── ECMAScriptLexer.py │ │ ├── ECMAScriptListener.py │ │ ├── ECMAScriptParser.py │ │ └── __init__.py │ ├── combinator.py │ ├── command.py │ ├── expression.py │ ├── hardware.py │ ├── main.py │ ├── processor.py │ ├── requirement │ │ ├── __init__.py │ │ └── docker │ │ │ ├── __init__.py │ │ │ ├── docker.py │ │ │ ├── kubernetes.py │ │ │ ├── nocontainer.py │ │ │ ├── schemas │ │ │ ├── docker.json │ │ │ ├── kubernetes.jinja2 │ │ │ ├── kubernetes.json │ │ │ ├── no-container.json │ │ │ └── singularity.json │ │ │ ├── singularity.py │ │ │ └── translator.py │ ├── runner.py │ ├── step.py │ ├── token.py │ ├── transformer.py │ ├── translator.py │ ├── utils.py │ └── workflow.py ├── data │ ├── __init__.py │ ├── manager.py │ ├── remotepath.py │ ├── schemas │ │ └── data_manager.json │ └── utils.py ├── deployment │ ├── __init__.py │ ├── aiotarstream.py │ ├── connector │ │ ├── __init__.py │ │ ├── base.py │ │ ├── container.py │ │ ├── kubernetes.py │ │ ├── local.py │ │ ├── occam.py │ │ ├── queue_manager.py │ │ ├── schemas │ │ │ ├── base │ │ │ │ ├── docker.json │ │ │ │ ├── kubernetes.json │ │ │ │ ├── queue_manager.json │ │ │ │ ├── singularity.json │ │ │ │ └── ssh.json │ │ │ ├── docker-compose.json │ │ │ ├── docker.json │ │ │ ├── flux.json │ │ │ ├── helm3.json │ │ │ ├── kubernetes.json │ │ │ ├── local.json │ │ │ ├── occam.json │ │ │ ├── pbs.json │ │ │ ├── singularity.json │ │ │ ├── slurm.json │ │ │ └── ssh.json │ │ └── ssh.py │ ├── filter │ │ ├── __init__.py │ │ ├── schemas │ │ │ └── shuffle.json │ │ └── shuffle.py │ ├── future.py │ ├── manager.py │ ├── schemas │ │ └── deployment_manager.json │ ├── stream.py │ ├── template.py │ ├── utils.py │ └── wrapper.py ├── ext │ ├── __init__.py │ ├── plugin.py │ └── utils.py ├── log_handler.py ├── main.py ├── parser.py ├── persistence │ ├── __init__.py │ ├── base.py │ ├── loading_context.py │ ├── schemas │ │ ├── sqlite.json │ │ └── sqlite.sql │ ├── sqlite.py │ └── utils.py ├── provenance │ ├── __init__.py │ └── run_crate.py ├── recovery │ ├── __init__.py │ ├── checkpoint_manager.py │ ├── failure_manager.py │ ├── policy │ │ ├── __init__.py │ │ └── recovery.py │ ├── schemas │ │ ├── default_checkpoint_manager.json │ │ ├── default_failure_manager.json │ │ ├── dummy_checkpoint_manager.json │ │ └── dummy_failure_manager.json │ └── utils.py ├── report.py ├── scheduling │ ├── __init__.py │ ├── policy │ │ ├── __init__.py │ │ ├── data_locality.py │ │ └── schemas │ │ │ └── data_locality.json │ ├── scheduler.py │ └── schemas │ │ └── scheduler.json ├── version.py └── workflow │ ├── __init__.py │ ├── combinator.py │ ├── command.py │ ├── executor.py │ ├── port.py │ ├── step.py │ ├── token.py │ ├── transformer.py │ └── utils.py ├── tests ├── __init__.py ├── conftest.py ├── cwl-conformance │ ├── conftest.py │ ├── streamflow-docker.yml │ ├── streamflow-kubernetes.yml │ └── streamflow-singularity.yml ├── data │ ├── cwl │ │ └── example │ │ │ ├── config.yml │ │ │ ├── main.cwl │ │ │ └── streamflow.yml │ ├── 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