├── .gitignore ├── CHANGES.txt ├── COPYING ├── README.md ├── data └── pyseqsee_app_template │ ├── __init__.py │ ├── batch_ui.py_tmpl │ ├── categories.py_tmpl │ ├── codelet_families │ ├── __init__.py │ └── all.py │ ├── controller.py_tmpl │ ├── gui │ ├── __init__.py │ ├── gui.py_tmpl │ └── workspace_view.py_tmpl │ ├── read_input_spec.py_tmpl │ ├── run_{application_name}.py_tmpl │ ├── stopping_conditions.py_tmpl │ ├── testing_input.txt_tmpl │ ├── tests │ └── __init__.py │ └── workspace.py_tmpl ├── docs ├── Makefile ├── _static │ └── nature.css ├── api │ ├── api_index.rst │ ├── category.rst │ ├── codelet_family.rst │ ├── codelets.rst │ ├── coderack.rst │ ├── controller.rst │ ├── ltm.rst │ ├── run_mode.rst │ ├── stream.rst │ └── subspace.rst ├── conf.py ├── developer │ ├── categories.rst │ ├── codelets.rst │ ├── coderack.rst │ ├── controller.rst │ ├── developer_index.rst │ ├── focusable.rst │ ├── ltm.rst │ ├── main.rst │ ├── question.rst │ ├── run_mode.rst │ ├── stream.rst │ ├── subspaces.rst │ ├── sundry.rst │ ├── ui.rst │ └── utils.rst ├── howto │ ├── add_codelet_families.rst │ ├── ask_question.rst │ ├── batch_and_sxs.rst │ ├── create_subspaces.rst │ ├── create_workspace_for_app.rst │ ├── flags.rst │ ├── howto_index.rst │ ├── install.rst │ ├── perceiving_something_new.rst │ ├── running_in_batch.rst │ ├── running_single_example.rst │ └── workspace_display.rst ├── images │ ├── Bongard_problem_convex_polygons.svg │ ├── batch_diff.png │ ├── favicon.ico │ ├── logo.jpg │ └── seqsee.png ├── index.rst ├── make.bat ├── new_app │ ├── add_input_flags.rst │ ├── create_new_app.rst │ ├── first_categories.rst │ ├── first_codelet.rst │ ├── first_ltm.rst │ ├── focusing.rst │ ├── new_app_index.rst │ ├── update_gui.rst │ └── update_workspace.rst ├── overview │ └── overview_index.rst ├── seqsee │ ├── objects.rst │ ├── relations.rst │ ├── seqsee_index.rst │ ├── utility_functions.rst │ └── workspace.rst └── theory │ └── theory_index.rst ├── farg ├── __init__.py ├── apps │ ├── __init__.py │ ├── bongard │ │ ├── __init__.py │ │ ├── batch_ui.py │ │ ├── categories.py │ │ ├── codelet_families │ │ │ ├── __init__.py │ │ │ └── all.py │ │ ├── controller.py │ │ ├── gui │ │ │ ├── __init__.py │ │ │ ├── gui.py │ │ │ └── workspace_view.py │ │ ├── read_input_spec.py │ │ ├── run_bongard.py │ │ ├── stopping_conditions.py │ │ ├── testing_input.txt │ │ ├── tests │ │ │ └── test_ltm.py │ │ └── workspace.py │ ├── pyseqsee │ │ ├── __init__.py │ │ ├── arena.py │ │ ├── categorization │ │ │ ├── __init__.py │ │ │ ├── categories.py │ │ │ ├── categorizable.py │ │ │ ├── logic.py │ │ │ └── numeric.py │ │ ├── codelets.py │ │ ├── controller.py │ │ ├── focusable.py │ │ ├── objects.py │ │ ├── relation.py │ │ ├── run_pyseqsee.py │ │ ├── stream.py │ │ ├── tests │ │ │ ├── test_arena.py │ │ │ ├── test_category.py │ │ │ ├── test_category_logic.py │ │ │ ├── test_ltm_category.py │ │ │ ├── test_objects.py │ │ │ ├── test_relations.py │ │ │ ├── test_stream.py │ │ │ └── utils.py │ │ ├── ui.py │ │ ├── utils.py │ │ └── workspace.py │ └── seqsee │ │ ├── __init__.py │ │ ├── anchored.py │ │ ├── batch_ui.py │ │ ├── categories.py │ │ ├── codelet_families │ │ ├── __init__.py │ │ ├── all.py │ │ ├── extend_group.py │ │ ├── overlapping_groups.py │ │ └── read_from_ws.py │ │ ├── controller.py │ │ ├── distance.py │ │ ├── exceptions.py │ │ ├── gui │ │ ├── __init__.py │ │ ├── conversation.py │ │ ├── groups_view.py │ │ ├── gui.py │ │ └── workspace_view.py │ │ ├── logging.conf │ │ ├── mapping.py │ │ ├── question.py │ │ ├── read_input_spec.py │ │ ├── relation.py │ │ ├── run_seqsee.py │ │ ├── sobject.py │ │ ├── stopping_conditions.py │ │ ├── structure_utils.py │ │ ├── subspaces │ │ ├── __init__.py │ │ ├── are_we_done.py │ │ ├── choose_item_to_focus_on.py │ │ ├── deal_with_conflicting_groups.py │ │ ├── get_mapping.py │ │ ├── go_beyond_known.py │ │ └── is_this_interlaced.py │ │ ├── testing_sequences.txt │ │ ├── testing_utils.py │ │ ├── tests │ │ ├── test_categories.py │ │ ├── test_fringe_overlap.py │ │ ├── test_ltm_with_mapping.py │ │ ├── test_ltm_with_objects.py │ │ ├── test_sobject.py │ │ ├── test_utils.py │ │ ├── test_workspace.py │ │ └── test_workspace2.py │ │ ├── util.py │ │ └── workspace.py ├── core │ ├── __init__.py │ ├── categorization │ │ ├── __init__.py │ │ ├── binding.py │ │ ├── categorizable.py │ │ └── category.py │ ├── codelet.py │ ├── coderack.py │ ├── controller.py │ ├── exceptions.py │ ├── focusable_mixin.py │ ├── history.py │ ├── ltm │ │ ├── __init__.py │ │ ├── edge.py │ │ ├── graph.py │ │ ├── manager.py │ │ ├── node.py │ │ └── storable.py │ ├── main.py │ ├── meta.py │ ├── question │ │ ├── __init__.py │ │ └── question.py │ ├── read_input_spec.py │ ├── run_mode │ │ ├── __init__.py │ │ ├── batch.py │ │ ├── gui.py │ │ ├── non_interactive.py │ │ ├── run_mode.py │ │ ├── single.py │ │ └── sxs.py │ ├── run_stats.py │ ├── stopping_conditions.py │ ├── stream.py │ ├── subspace.py │ ├── testing_utils.py │ ├── tests │ │ ├── test_codelet.py │ │ ├── test_coderack.py │ │ ├── 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