├── .gitignore ├── COPYING ├── README.md ├── doc ├── manual.html └── manual.pdf ├── img.png ├── projects ├── dilute_PEG │ ├── PEG_081418_hires.gif │ ├── README │ ├── schematic_rotation.pdf │ └── schematic_rotation.png ├── dilute_comb │ ├── README │ └── comb.png ├── example_1 │ ├── data │ │ └── pdf.png │ └── input.dat ├── example_2 │ ├── data │ │ └── dumbell.png │ └── input.dat ├── example_3 │ ├── data │ │ └── cs.png │ ├── inp1.dat │ ├── inp2.dat │ └── inp3.dat ├── prepare.sh ├── semidilute_comb │ ├── README │ ├── data │ │ ├── CoM │ │ │ └── README │ │ ├── Ree │ │ │ └── README │ │ ├── Rg │ │ │ └── README │ │ ├── dump │ │ │ ├── CoM.dmp.bin │ │ │ ├── README │ │ │ ├── Rb.dmp.bin │ │ │ ├── cmif.dmp.bin │ │ │ ├── q.dmp.bin │ │ │ └── rF.dmp.bin │ │ ├── m │ │ │ └── README │ │ ├── rheol │ │ │ └── README │ │ ├── rst │ │ │ └── README │ │ └── st │ │ │ └── README │ ├── input.dat │ └── semidilute_comb.gif ├── semidilute_dumb_shear │ ├── data │ │ ├── CoM │ │ │ └── README │ │ ├── Ree │ │ │ └── README │ │ ├── Rg │ │ │ └── README │ │ ├── dump │ │ │ └── README │ │ ├── m │ │ │ └── README │ │ ├── rheol │ │ │ └── README │ │ ├── rst │ │ │ └── README │ │ └── st │ │ │ ├── CoM.st.bin │ │ │ ├── Rb.st.bin │ │ │ ├── q.st.bin │ │ │ └── q.st.dat │ └── input.dat ├── semidilute_linear │ ├── README │ ├── semidilute.gif │ └── semidilute.png ├── semidilute_linear_nseg150_c1 │ └── prepare.sh └── wall_tet_DNA │ ├── data │ ├── CoM.st.dat │ └── q.st.dat │ └── input.dat └── src ├── Makefile ├── common ├── Makefile ├── arry_mod.f90 ├── cmn_io_mod.f90 ├── cmn_tp_mod.f90 ├── cuda │ ├── dev_cumod.cuf │ ├── gpu_cumod.cuf │ └── magma_cumod.cuf ├── mkl_spblas.fi ├── mkl_spblas_crr.fi ├── mpi_mod.f90 ├── prcn_mod.f90 ├── rand_mod.f90 └── strg_mod.f90 ├── dilute_bs ├── HIEVCalc.f90 ├── Makefile ├── cuda │ ├── cusolver_wrap.cuf │ ├── dcmp_dlt_cumod.cuf │ ├── gpu_cumod.cuf │ ├── intrn_cumod.cuf │ ├── mmul_cumod.cuf │ └── test_cumod.cuf ├── dcmp_mod.f90 ├── dlt_mod.f90 ├── ev_smod.f90 ├── evbb_smod.f90 ├── evbw_smod.f90 ├── force_mod.f90 ├── hi_smod.f90 ├── hibb_smod.f90 ├── hibw_smod.f90 ├── inp_dlt.f90 ├── intrn_mod.f90 ├── mmul_cumod.cuf ├── pp_mod.f90 ├── root_mod.f90 └── sde_mod.f90 ├── lib └── README ├── main.f90 ├── make.inc ├── make.inc.CPU.INTEL ├── make.inc.CPU.INTEL.ACF ├── make.inc.CPU.INTEL.BRIDGES2 ├── make.inc.CPU.INTEL.COMET ├── make.inc.CPU.PGI.BRIDGES2 ├── make.inc.GPU.PGI.ACF ├── make.inc.GPU.PGI.BRIDGES2 ├── semidilute_bs ├── Makefile ├── box_mod.f90 ├── chain_mod.f90 ├── conv_mod.f90 ├── cuda │ ├── chain_cumod.cuf │ ├── conv_cumod.cuf │ ├── cusparse_wrap.cuf │ ├── dcmp_cumod.cuf │ ├── diffcalc_cumod.cuf │ ├── diffdcmp_cumod.cuf │ ├── evforce_cumod.cuf │ ├── evverlet_cumod.cuf │ ├── flow_cumod.cuf │ ├── force_cumod.cuf │ ├── hi_cumod.cuf │ ├── hiverlet_cumod.cuf │ ├── magma_smdlt.cuf │ ├── rndm_cumod.cuf │ ├── sprforce_cumod.cuf │ ├── test_smdlt_cumod.cuf │ └── trsfm_cumod.cuf ├── dcmp_smdlt.f90 ├── diffcalc_mod.f90 ├── diffdcmp_mod.f90 ├── evforce_mod.f90 ├── evverlet_mod.f90 ├── flow_mod.f90 ├── force_smdlt.f90 ├── hi_mod.f90 ├── io_mod.f90 ├── mkl_dfti.f90 ├── omp_lib.f90 ├── pp_smdlt.f90 ├── rndm_mod.f90 ├── smdlt_mod.f90 ├── sprforce_mod.f90 ├── tmng_mod.f90 ├── trsfm_mod.f90 ├── types.f90 └── verlet_mod.f90 └── utils ├── cnfgen ├── Makefile └── cnfgen.f90 ├── cnfsrt ├── Makefile ├── cnf_srt_main_final.f90 └── input.dat ├── crrfcn ├── Makefile └── crrfcn.f90 ├── mscrpt ├── anim │ ├── dilute_bs │ │ ├── anim.m │ │ ├── rndm.m │ │ └── sphere.m │ └── semidilute_bs │ │ ├── BoxConfig_elong.dat │ │ ├── CoM_elong.dat │ │ ├── Rb_elong.dat │ │ └── smdlt_anim.m ├── chi │ ├── bfunc.m │ ├── bspl_func.m │ ├── chi_FENE.m │ ├── chi_ILC.m │ ├── chi_RWS.m │ ├── chi_WLC.m │ └── chi_WLC_UD.m └── hstar │ ├── hsfunc.m │ └── hstar.m ├── pdf ├── Makefile └── pdf.f90 ├── pyscrpt └── calc_rlx │ └── calc_rlx.py └── wallcollision ├── Makefile └── wallcollision.f90 /.gitignore: -------------------------------------------------------------------------------- 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