├── .gitignore ├── LICENSE ├── README.md ├── code ├── __init__.py ├── generator.py ├── regressor.py ├── sampling.py ├── train_generator.py ├── train_regressor.py └── utils.py ├── data ├── 30AMP.txt ├── 500gen.txt ├── biochem │ ├── biochem_30AMPs.csv │ ├── biochem_450tested.csv │ ├── biochem_VAE1.csv │ ├── biochem_VAE2.csv │ ├── biochem_VAE_gen.csv │ ├── biochem_robust.csv │ ├── biochem_train_neg.csv │ └── biochem_train_pos.csv └── train_data │ ├── AMP │ ├── generator_train.csv │ ├── regressor_train_AMP_gr_neg.csv │ └── regressor_train_AMP_gr_pos.csv │ ├── nonAMP │ └── regressor_train_nonAMP.csv │ └── toxicity │ ├── nontoxic.csv │ └── toxic.csv ├── example.py ├── requirements.txt └── saved_models └── paper ├── generator ├── VAE_v2_decoder │ ├── keras_metadata.pb │ ├── saved_model.pb │ └── variables │ │ ├── variables.data-00000-of-00001 │ │ └── variables.index └── VAE_v2_encoder │ ├── keras_metadata.pb │ ├── saved_model.pb │ └── variables │ ├── variables.data-00000-of-00001 │ └── variables.index └── regressor ├── CNN_gr_neg ├── keras_metadata.pb ├── saved_model.pb └── variables │ ├── variables.data-00000-of-00001 │ └── variables.index ├── CNN_gr_pos ├── keras_metadata.pb ├── saved_model.pb └── variables │ ├── variables.data-00000-of-00001 │ └── variables.index ├── LSTM_gr_neg ├── keras_metadata.pb ├── saved_model.pb └── variables │ ├── variables.data-00000-of-00001 │ └── variables.index └── LSTM_gr_pos ├── keras_metadata.pb ├── saved_model.pb └── variables ├── variables.data-00000-of-00001 └── variables.index /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/amirpandi/Deep_AMP/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/amirpandi/Deep_AMP/HEAD/LICENSE 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