├── .github ├── python-version.txt └── workflows │ ├── docs.yml │ └── main.yml ├── .gitignore ├── LICENSE.txt ├── README.md ├── data ├── simulated │ ├── generate_oned_data.py │ └── generate_twod_data.py └── warps.py ├── dist ├── gpsa-0.1.tar.gz ├── gpsa-0.2.tar.gz ├── gpsa-0.3.tar.gz ├── gpsa-0.4.tar.gz ├── gpsa-0.5.tar.gz └── gpsa-0.6.tar.gz ├── examples ├── alignment_animation.gif ├── alignment_animation_template.gif ├── grid_example.py ├── synthetic_data.h5ad └── synthetic_data_example.png ├── experiments ├── expression │ ├── ben.zip │ ├── ben_oberlton │ │ └── ben_example.py │ ├── codex │ │ └── codex_alignment.py │ ├── macosko_alignment │ │ └── two_slice_alignment.py │ ├── slideseq │ │ ├── compute_landmark_distances.py │ │ ├── plot_prediction_results.py │ │ ├── plot_slideseq_alignment.py │ │ ├── plot_slideseq_deformation_field.py │ │ ├── slideseq_alignment.py │ │ ├── slideseq_plot_spatially_variable_genes.py │ │ ├── slideseq_prediction.py │ │ ├── slideseq_prediction_save_preds.py │ │ └── slideseq_wallclock_time.py │ ├── st │ │ ├── plot_gsea_results.py │ │ ├── plot_st_alignment_3d.py │ │ ├── plot_st_alignment_multiple_types.py │ │ ├── plot_synthetic_warp_numgenes_results.py │ │ ├── st_alignment.py │ │ ├── st_alignment_3d.py │ │ ├── st_alignment_3d_round2.py │ │ ├── st_alignment_synthetic_warp.py │ │ ├── st_alignment_synthetic_warp_multiple_types.py │ │ ├── st_alignment_synthetic_warp_numgenes.py │ │ ├── st_genevariance_gsea.R │ │ ├── st_prediction.py │ │ └── st_variance_analysis.py │ └── visium │ │ ├── moransi_post_alignment.py │ │ ├── plot_alignment.py │ │ ├── plot_multimodal_alignment.py │ │ ├── plot_prediction_results.py │ │ ├── visium_alignment.py │ │ ├── visium_component_analysis.py │ │ ├── visium_morans_i.py │ │ ├── visium_multimodal_alignment.py │ │ ├── visium_plot_spatially_variable_genes.py │ │ ├── visium_prediction.py │ │ ├── visium_prediction_from_saved.py │ │ ├── visium_variance_experiment.py │ │ └── visium_wallclock_time.py └── simulations │ ├── error_experiment_parameter_range.py │ ├── one_dimensional.py │ ├── one_dimensional_prediction.py │ ├── plot_errors.py │ ├── plot_largenumspots_results.py │ ├── plot_parameter_range_results.py │ ├── plot_time_experiment_results.py │ ├── simulation_large_numspots.py │ ├── two_dimensional.py │ ├── two_dimensional_animation.py │ ├── two_dimensional_denovo_vs_templatebased.py │ ├── two_dimensional_diff_fov.py │ ├── two_dimensional_experiments.py │ ├── two_dimensional_fixed_view.py │ ├── two_dimensional_mle.py │ ├── two_dimensional_noise_level.py │ ├── two_dimensional_prediction.py │ ├── two_dimensional_time_complexity.py │ ├── two_dimensional_warp_magnitude.py │ ├── two_dimensional_warp_magnitude_linear.py │ ├── two_dimensional_warp_magnitude_polar.py │ ├── visualize_oned_warp.py │ └── warp_parameter_demo.py ├── gpsa-0.6 ├── gpsa.egg-info ├── PKG-INFO ├── SOURCES.txt ├── dependency_links.txt └── top_level.txt ├── gpsa ├── __init__.py ├── models │ ├── __init__.py │ ├── gpsa.py │ └── vgpsa.py ├── plotting │ ├── __init__.py │ └── callbacks.py └── util │ ├── __init__.py │ └── util.py ├── requirements.txt ├── setup.py └── tests ├── test_import.py └── test_test.py /.github/python-version.txt: -------------------------------------------------------------------------------- 1 | 3.8.5 -------------------------------------------------------------------------------- /.github/workflows/docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/.github/workflows/docs.yml -------------------------------------------------------------------------------- /.github/workflows/main.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/.github/workflows/main.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/README.md -------------------------------------------------------------------------------- /data/simulated/generate_oned_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/data/simulated/generate_oned_data.py -------------------------------------------------------------------------------- /data/simulated/generate_twod_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/data/simulated/generate_twod_data.py -------------------------------------------------------------------------------- /data/warps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/data/warps.py -------------------------------------------------------------------------------- /dist/gpsa-0.1.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/dist/gpsa-0.1.tar.gz -------------------------------------------------------------------------------- /dist/gpsa-0.2.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/dist/gpsa-0.2.tar.gz -------------------------------------------------------------------------------- /dist/gpsa-0.3.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/dist/gpsa-0.3.tar.gz -------------------------------------------------------------------------------- /dist/gpsa-0.4.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/dist/gpsa-0.4.tar.gz -------------------------------------------------------------------------------- /dist/gpsa-0.5.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/dist/gpsa-0.5.tar.gz -------------------------------------------------------------------------------- /dist/gpsa-0.6.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/dist/gpsa-0.6.tar.gz -------------------------------------------------------------------------------- /examples/alignment_animation.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/examples/alignment_animation.gif -------------------------------------------------------------------------------- /examples/alignment_animation_template.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/examples/alignment_animation_template.gif -------------------------------------------------------------------------------- /examples/grid_example.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/examples/grid_example.py -------------------------------------------------------------------------------- /examples/synthetic_data.h5ad: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/examples/synthetic_data.h5ad -------------------------------------------------------------------------------- /examples/synthetic_data_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/examples/synthetic_data_example.png -------------------------------------------------------------------------------- /experiments/expression/ben.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/ben.zip -------------------------------------------------------------------------------- /experiments/expression/ben_oberlton/ben_example.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/ben_oberlton/ben_example.py -------------------------------------------------------------------------------- /experiments/expression/codex/codex_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/codex/codex_alignment.py -------------------------------------------------------------------------------- /experiments/expression/macosko_alignment/two_slice_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/macosko_alignment/two_slice_alignment.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/compute_landmark_distances.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/compute_landmark_distances.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/plot_prediction_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/plot_prediction_results.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/plot_slideseq_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/plot_slideseq_alignment.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/plot_slideseq_deformation_field.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/plot_slideseq_deformation_field.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/slideseq_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/slideseq_alignment.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/slideseq_plot_spatially_variable_genes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/slideseq_plot_spatially_variable_genes.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/slideseq_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/slideseq_prediction.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/slideseq_prediction_save_preds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/slideseq_prediction_save_preds.py -------------------------------------------------------------------------------- /experiments/expression/slideseq/slideseq_wallclock_time.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/slideseq/slideseq_wallclock_time.py -------------------------------------------------------------------------------- /experiments/expression/st/plot_gsea_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/plot_gsea_results.py -------------------------------------------------------------------------------- /experiments/expression/st/plot_st_alignment_3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/plot_st_alignment_3d.py -------------------------------------------------------------------------------- /experiments/expression/st/plot_st_alignment_multiple_types.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/plot_st_alignment_multiple_types.py -------------------------------------------------------------------------------- /experiments/expression/st/plot_synthetic_warp_numgenes_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/plot_synthetic_warp_numgenes_results.py -------------------------------------------------------------------------------- /experiments/expression/st/st_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_alignment.py -------------------------------------------------------------------------------- /experiments/expression/st/st_alignment_3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_alignment_3d.py -------------------------------------------------------------------------------- /experiments/expression/st/st_alignment_3d_round2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_alignment_3d_round2.py -------------------------------------------------------------------------------- /experiments/expression/st/st_alignment_synthetic_warp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_alignment_synthetic_warp.py -------------------------------------------------------------------------------- /experiments/expression/st/st_alignment_synthetic_warp_multiple_types.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_alignment_synthetic_warp_multiple_types.py -------------------------------------------------------------------------------- /experiments/expression/st/st_alignment_synthetic_warp_numgenes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_alignment_synthetic_warp_numgenes.py -------------------------------------------------------------------------------- /experiments/expression/st/st_genevariance_gsea.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_genevariance_gsea.R -------------------------------------------------------------------------------- /experiments/expression/st/st_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_prediction.py -------------------------------------------------------------------------------- /experiments/expression/st/st_variance_analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/st/st_variance_analysis.py -------------------------------------------------------------------------------- /experiments/expression/visium/moransi_post_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/moransi_post_alignment.py -------------------------------------------------------------------------------- /experiments/expression/visium/plot_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/plot_alignment.py -------------------------------------------------------------------------------- /experiments/expression/visium/plot_multimodal_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/plot_multimodal_alignment.py -------------------------------------------------------------------------------- /experiments/expression/visium/plot_prediction_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/plot_prediction_results.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_alignment.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_component_analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_component_analysis.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_morans_i.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_morans_i.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_multimodal_alignment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_multimodal_alignment.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_plot_spatially_variable_genes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_plot_spatially_variable_genes.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_prediction.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_prediction_from_saved.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_prediction_from_saved.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_variance_experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_variance_experiment.py -------------------------------------------------------------------------------- /experiments/expression/visium/visium_wallclock_time.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/expression/visium/visium_wallclock_time.py -------------------------------------------------------------------------------- /experiments/simulations/error_experiment_parameter_range.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/error_experiment_parameter_range.py -------------------------------------------------------------------------------- /experiments/simulations/one_dimensional.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/one_dimensional.py -------------------------------------------------------------------------------- /experiments/simulations/one_dimensional_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/one_dimensional_prediction.py -------------------------------------------------------------------------------- /experiments/simulations/plot_errors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/plot_errors.py -------------------------------------------------------------------------------- /experiments/simulations/plot_largenumspots_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/plot_largenumspots_results.py -------------------------------------------------------------------------------- /experiments/simulations/plot_parameter_range_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/plot_parameter_range_results.py -------------------------------------------------------------------------------- /experiments/simulations/plot_time_experiment_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/plot_time_experiment_results.py -------------------------------------------------------------------------------- /experiments/simulations/simulation_large_numspots.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/simulation_large_numspots.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_animation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_animation.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_denovo_vs_templatebased.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_denovo_vs_templatebased.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_diff_fov.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_diff_fov.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_experiments.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_experiments.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_fixed_view.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_fixed_view.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_mle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_mle.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_noise_level.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_noise_level.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_prediction.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_time_complexity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_time_complexity.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_warp_magnitude.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_warp_magnitude.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_warp_magnitude_linear.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_warp_magnitude_linear.py -------------------------------------------------------------------------------- /experiments/simulations/two_dimensional_warp_magnitude_polar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/two_dimensional_warp_magnitude_polar.py -------------------------------------------------------------------------------- /experiments/simulations/visualize_oned_warp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/visualize_oned_warp.py -------------------------------------------------------------------------------- /experiments/simulations/warp_parameter_demo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/experiments/simulations/warp_parameter_demo.py -------------------------------------------------------------------------------- /gpsa-0.6: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /gpsa.egg-info/PKG-INFO: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa.egg-info/PKG-INFO -------------------------------------------------------------------------------- /gpsa.egg-info/SOURCES.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa.egg-info/SOURCES.txt -------------------------------------------------------------------------------- /gpsa.egg-info/dependency_links.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /gpsa.egg-info/top_level.txt: -------------------------------------------------------------------------------- 1 | gpsa 2 | -------------------------------------------------------------------------------- /gpsa/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/__init__.py -------------------------------------------------------------------------------- /gpsa/models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /gpsa/models/gpsa.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/models/gpsa.py -------------------------------------------------------------------------------- /gpsa/models/vgpsa.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/models/vgpsa.py -------------------------------------------------------------------------------- /gpsa/plotting/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/plotting/__init__.py -------------------------------------------------------------------------------- /gpsa/plotting/callbacks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/plotting/callbacks.py -------------------------------------------------------------------------------- /gpsa/util/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/util/__init__.py -------------------------------------------------------------------------------- /gpsa/util/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/gpsa/util/util.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/setup.py -------------------------------------------------------------------------------- /tests/test_import.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/tests/test_import.py -------------------------------------------------------------------------------- /tests/test_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcharlesjones/spatial-alignment/HEAD/tests/test_test.py --------------------------------------------------------------------------------