├── .gitignore ├── .hgtags ├── MANIFEST.in ├── README.rst ├── bench └── bench_hdp.py ├── setup.py ├── src ├── BEM.py ├── __init__.py ├── cpp │ ├── Munkres.cpp │ └── Munkres.h ├── cuda_functions.py ├── cufiles │ ├── apply_rows_max.cu │ ├── apply_rows_max_cm.cu │ ├── helpers.cu │ ├── sweep_columns.cu │ ├── sweep_columns_cm.cu │ ├── sweep_rows.cu │ └── sweep_rows_cm.cu ├── dpmix.py ├── gpuworker.py ├── hdp.py ├── kernels.py ├── multicpu.py ├── multigpu.py ├── munkres.pyx ├── sampler_utils.pyx ├── sandbox │ └── test_sampler.py ├── utils.py └── wishart.py └── tests ├── test_bounds.py ├── test_dpmix.py ├── test_hdp.py ├── test_hdp_callable.py ├── test_help.py ├── test_ident.py ├── test_multigpu.py └── test_util.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/.gitignore -------------------------------------------------------------------------------- /.hgtags: -------------------------------------------------------------------------------- 1 | 4bfd2480d187bb55401d919146897b2a39ce5510 default/master 2 | -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/README.rst -------------------------------------------------------------------------------- /bench/bench_hdp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/bench/bench_hdp.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/setup.py -------------------------------------------------------------------------------- /src/BEM.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/BEM.py -------------------------------------------------------------------------------- /src/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/__init__.py -------------------------------------------------------------------------------- /src/cpp/Munkres.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cpp/Munkres.cpp -------------------------------------------------------------------------------- /src/cpp/Munkres.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cpp/Munkres.h -------------------------------------------------------------------------------- /src/cuda_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cuda_functions.py -------------------------------------------------------------------------------- /src/cufiles/apply_rows_max.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/apply_rows_max.cu -------------------------------------------------------------------------------- /src/cufiles/apply_rows_max_cm.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/apply_rows_max_cm.cu -------------------------------------------------------------------------------- /src/cufiles/helpers.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/helpers.cu -------------------------------------------------------------------------------- /src/cufiles/sweep_columns.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/sweep_columns.cu -------------------------------------------------------------------------------- /src/cufiles/sweep_columns_cm.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/sweep_columns_cm.cu -------------------------------------------------------------------------------- /src/cufiles/sweep_rows.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/sweep_rows.cu -------------------------------------------------------------------------------- /src/cufiles/sweep_rows_cm.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/cufiles/sweep_rows_cm.cu -------------------------------------------------------------------------------- /src/dpmix.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/dpmix.py -------------------------------------------------------------------------------- /src/gpuworker.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/gpuworker.py -------------------------------------------------------------------------------- /src/hdp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/hdp.py -------------------------------------------------------------------------------- /src/kernels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/kernels.py -------------------------------------------------------------------------------- /src/multicpu.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/multicpu.py -------------------------------------------------------------------------------- /src/multigpu.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/multigpu.py -------------------------------------------------------------------------------- /src/munkres.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/munkres.pyx -------------------------------------------------------------------------------- /src/sampler_utils.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/sampler_utils.pyx -------------------------------------------------------------------------------- /src/sandbox/test_sampler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/sandbox/test_sampler.py -------------------------------------------------------------------------------- /src/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/utils.py -------------------------------------------------------------------------------- /src/wishart.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/src/wishart.py -------------------------------------------------------------------------------- /tests/test_bounds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_bounds.py -------------------------------------------------------------------------------- /tests/test_dpmix.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_dpmix.py -------------------------------------------------------------------------------- /tests/test_hdp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_hdp.py -------------------------------------------------------------------------------- /tests/test_hdp_callable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_hdp_callable.py -------------------------------------------------------------------------------- /tests/test_help.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_help.py -------------------------------------------------------------------------------- /tests/test_ident.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_ident.py -------------------------------------------------------------------------------- /tests/test_multigpu.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_multigpu.py -------------------------------------------------------------------------------- /tests/test_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/andrewcron/dpmix/HEAD/tests/test_util.py --------------------------------------------------------------------------------