├── .Rprofile
├── .gitattributes
├── .gitignore
├── CONDUCT.md
├── CONTRIBUTING.md
├── LICENSE.md
├── R
├── funs_data-cleaning.R
├── funs_details.R
├── funs_models-iptw.R
├── funs_notebook.R
├── graphics.R
├── misc.R
├── models_oda.R
├── models_purpose.R
└── models_recipients.R
├── README.md
├── README.qmd
├── _extensions
└── quarto-ext
│ └── fontawesome
│ ├── _extension.yml
│ ├── assets
│ ├── css
│ │ ├── all.css
│ │ └── latex-fontsize.css
│ └── webfonts
│ │ ├── fa-brands-400.ttf
│ │ ├── fa-brands-400.woff2
│ │ ├── fa-regular-400.ttf
│ │ ├── fa-regular-400.woff2
│ │ ├── fa-solid-900.ttf
│ │ ├── fa-solid-900.woff2
│ │ ├── fa-v4compatibility.ttf
│ │ └── fa-v4compatibility.woff2
│ └── fontawesome.lua
├── _freeze
└── notebook
│ ├── causal-model
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── full-giant-dag-1.png
│ │ ├── simple-dag-1.png
│ │ ├── simple-dag-letters-1.png
│ │ └── simplerish-dag-1.png
│ ├── design-details
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── show-emrld-1.png
│ │ ├── show-peach-1.png
│ │ ├── show-prism-1.png
│ │ ├── show-prism-short-1.png
│ │ ├── show-purpor-1.png
│ │ ├── show-sunset-1.png
│ │ └── show-teal-1.png
│ ├── estimands
│ └── execute-results
│ │ └── html.json
│ ├── general-analysis
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── advocacy-laws-1.png
│ │ ├── aid-by-contention-1.png
│ │ ├── aid-by-donor-1.png
│ │ ├── ccsi-aid-allhs-1.png
│ │ ├── civicus-map-1.png
│ │ ├── compulsory-vs-burdensome-1.png
│ │ ├── plot-aid-channels-1.png
│ │ ├── plot-all-channels-1.png
│ │ ├── plot-all-dvs-1.png
│ │ ├── plot-channels-post-2000-1.png
│ │ ├── plot-contentious-aid-1.png
│ │ ├── plot-oecd-aid-1.png
│ │ ├── plot-us-aid-1.png
│ │ ├── restrictions-aid-h1-1.png
│ │ ├── restrictions-aid-h2-1.png
│ │ └── restrictions-aid-h3-1.png
│ ├── get-merge-data
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── data-missing-countries-1.png
│ │ ├── data-missing-countries-sans-laws-1.png
│ │ ├── final-data-missing-countries-1.png
│ │ ├── final-data-missing-donors-1.png
│ │ └── vdem-civil-society-index-1.png
│ ├── manuscript
│ └── execute-results
│ │ └── html.json
│ ├── model-details
│ └── execute-results
│ │ └── html.json
│ ├── model-tricky-outcomes
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── plot-all-prop-contentious-1.png
│ │ ├── plot-all-prop-ngo-domestic-1.png
│ │ ├── plot-all-prop-ngo-foreign-1.png
│ │ ├── plot-country-lines-hu-1.png
│ │ ├── plot-country-lines-zi-1.png
│ │ ├── plot-hu-all-parts-1.png
│ │ ├── plot-hu-conditional-mfx-1.png
│ │ ├── plot-hu-conditional-mfx-all-1.png
│ │ ├── plot-hu-conditional-predictions-1.png
│ │ ├── plot-hu-epred-1.png
│ │ ├── plot-hu-linpred-1.png
│ │ ├── plot-hu-trace-1.png
│ │ ├── plot-hu-trank-1.png
│ │ ├── plot-hurdle-priors-1.png
│ │ ├── plot-marginal-mfx-both-hu-1.png
│ │ ├── plot-marginal-mfx-both-zi-1.png
│ │ ├── plot-oda-over-time-highlight-1.png
│ │ ├── plot-pp-check-hu-1.png
│ │ ├── plot-pp-check-zi-1.png
│ │ ├── plot-prop-zero-hu-1.png
│ │ ├── plot-prop-zero-zi-1.png
│ │ ├── plot-prop-zeros-over-time-1.png
│ │ ├── plot-prop-zeros-over-time-zi-1.png
│ │ ├── plot-zero-oda-1.png
│ │ ├── plot-zero-props-1.png
│ │ ├── plot-zi-all-parts-1.png
│ │ ├── plot-zi-conditional-mfx-1.png
│ │ ├── plot-zi-conditional-mfx-all-1.png
│ │ ├── plot-zi-conditional-predictions-1.png
│ │ ├── plot-zi-epred-1.png
│ │ ├── plot-zi-linpred-1.png
│ │ ├── plot-zi-phi-1.png
│ │ ├── plot-zi-priors-1.png
│ │ ├── plot-zi-trace-1.png
│ │ ├── plot-zi-trank-1.png
│ │ ├── prior-simulations-hurdle-1.png
│ │ ├── prior-simulations-zi-1.png
│ │ ├── rho-dist-hu-1.png
│ │ └── rho-dist-zi-1.png
│ ├── models_aid-contentiousness
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── h2-check-denominator-1.png
│ │ ├── h2-check-denominator-2.png
│ │ ├── h2-check-outcome-1.png
│ │ ├── h2-conditional-effects-1.png
│ │ ├── h2-conditional-effects-2.png
│ │ ├── h2-conditional-effects-3.png
│ │ ├── h2-conditional-effects-4.png
│ │ ├── h2-plots-defacto-1.png
│ │ ├── h2-plots-dejure-1.png
│ │ ├── iptws-advocacy-1.png
│ │ ├── iptws-ccsi-1.png
│ │ ├── iptws-entry-1.png
│ │ ├── iptws-funding-1.png
│ │ ├── iptws-total-oda-1.png
│ │ ├── plot-cfx-mfx-advocacy-1.png
│ │ ├── plot-cfx-mfx-ccsi-1.png
│ │ ├── plot-cfx-mfx-combined-1.png
│ │ ├── plot-cfx-mfx-defacto-1.png
│ │ ├── plot-cfx-mfx-entry-1.png
│ │ ├── plot-cfx-mfx-funding-1.png
│ │ ├── plot-cfx-mfx-repress-1.png
│ │ ├── plot-cfx-mfx-total-1.png
│ │ ├── plot-cfx-predictions-combined-1.png
│ │ ├── plot-cfx-predictions-defacto-1.png
│ │ ├── plot-cfx-range-advocacy-1.png
│ │ ├── plot-cfx-range-ccsi-1.png
│ │ ├── plot-cfx-range-entry-1.png
│ │ ├── plot-cfx-range-funding-1.png
│ │ ├── plot-cfx-range-repress-1.png
│ │ ├── plot-cfx-range-total-1.png
│ │ ├── plot-denom-ppcheck-1.png
│ │ ├── plot-denom-trace-1.png
│ │ ├── plot-denom-trank-1.png
│ │ ├── plot-iptws-advocacy-1.png
│ │ ├── plot-iptws-ccsi-1.png
│ │ ├── plot-iptws-csrepress-1.png
│ │ ├── plot-iptws-entry-1.png
│ │ ├── plot-iptws-funding-1.png
│ │ ├── plot-iptws-total-oda-1.png
│ │ ├── plot-iptws-total-purpose-1.png
│ │ ├── plot-num-ppcheck-1.png
│ │ ├── plot-num-trace-1.png
│ │ ├── plot-num-trank-1.png
│ │ ├── plot-outcome-ppcheck-1.png
│ │ ├── plot-outcome-priors-1.png
│ │ ├── plot-outcome-trace-1.png
│ │ ├── plot-outcome-trank-1.png
│ │ ├── plot-prop-zero-zi-1.png
│ │ ├── plot-weight-priors-1.png
│ │ ├── plot-zero-purpose-1.png
│ │ └── plot-zi-phi-1.png
│ ├── models_aid-recipients
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── plot-cfx-mfx-advocacy-dom-1.png
│ │ ├── plot-cfx-mfx-advocacy-foreign-1.png
│ │ ├── plot-cfx-mfx-ccsi-dom-1.png
│ │ ├── plot-cfx-mfx-ccsi-foreign-1.png
│ │ ├── plot-cfx-mfx-combined-dom-1.png
│ │ ├── plot-cfx-mfx-combined-foreign-1.png
│ │ ├── plot-cfx-mfx-defacto-dom-1.png
│ │ ├── plot-cfx-mfx-defacto-foreign-1.png
│ │ ├── plot-cfx-mfx-entry-dom-1.png
│ │ ├── plot-cfx-mfx-entry-foreign-1.png
│ │ ├── plot-cfx-mfx-funding-dom-1.png
│ │ ├── plot-cfx-mfx-funding-foreign-1.png
│ │ ├── plot-cfx-mfx-repress-dom-1.png
│ │ ├── plot-cfx-mfx-repress-foreign-1.png
│ │ ├── plot-cfx-mfx-total-dom-1.png
│ │ ├── plot-cfx-mfx-total-foreign-1.png
│ │ ├── plot-cfx-predictions-combined-dom-1.png
│ │ ├── plot-cfx-predictions-combined-foreign-1.png
│ │ ├── plot-cfx-predictions-defacto-dom-1.png
│ │ ├── plot-cfx-predictions-defacto-foreign-1.png
│ │ ├── plot-cfx-range-advocacy-dom-1.png
│ │ ├── plot-cfx-range-advocacy-foreign-1.png
│ │ ├── plot-cfx-range-ccsi-dom-1.png
│ │ ├── plot-cfx-range-ccsi-foreign-1.png
│ │ ├── plot-cfx-range-entry-dom-1.png
│ │ ├── plot-cfx-range-entry-foreign-1.png
│ │ ├── plot-cfx-range-funding-dom-1.png
│ │ ├── plot-cfx-range-funding-foreign-1.png
│ │ ├── plot-cfx-range-repress-dom-1.png
│ │ ├── plot-cfx-range-repress-foreign-1.png
│ │ ├── plot-cfx-range-total-dom-1.png
│ │ ├── plot-cfx-range-total-foreign-1.png
│ │ ├── plot-denom-ppcheck-1.png
│ │ ├── plot-denom-trace-1.png
│ │ ├── plot-denom-trank-1.png
│ │ ├── plot-iptws-advocacy-1.png
│ │ ├── plot-iptws-advocacy-dom-1.png
│ │ ├── plot-iptws-advocacy-foreign-1.png
│ │ ├── plot-iptws-ccsi-1.png
│ │ ├── plot-iptws-ccsi-dom-1.png
│ │ ├── plot-iptws-ccsi-foreign-1.png
│ │ ├── plot-iptws-csrepress-1.png
│ │ ├── plot-iptws-csrepress-dom-1.png
│ │ ├── plot-iptws-csrepress-foreign-1.png
│ │ ├── plot-iptws-entry-1.png
│ │ ├── plot-iptws-entry-dom-1.png
│ │ ├── plot-iptws-entry-foreign-1.png
│ │ ├── plot-iptws-funding-1.png
│ │ ├── plot-iptws-funding-dom-1.png
│ │ ├── plot-iptws-funding-foreign-1.png
│ │ ├── plot-iptws-total-oda-dom-1.png
│ │ ├── plot-iptws-total-oda-foreign-1.png
│ │ ├── plot-iptws-total-recip-dom-1.png
│ │ ├── plot-iptws-total-recip-foreign-1.png
│ │ ├── plot-num-ppcheck-1.png
│ │ ├── plot-num-trace-1.png
│ │ ├── plot-num-trank-1.png
│ │ ├── plot-outcome-ppcheck-1.png
│ │ ├── plot-outcome-trace-1.png
│ │ ├── plot-outcome-trank-1.png
│ │ ├── plot-prop-zero-zi-1.png
│ │ ├── plot-zero-recip-1.png
│ │ └── plot-zi-phi-1.png
│ ├── models_total-aid
│ ├── execute-results
│ │ └── html.json
│ └── figure-html
│ │ ├── h1-check-denominator-1.png
│ │ ├── h1-check-denominator-2.png
│ │ ├── h1-check-numerator-1.png
│ │ ├── h1-check-numerator-2.png
│ │ ├── h1-check-outcome-1.png
│ │ ├── h1-conditional-effects-1.png
│ │ ├── h1-conditional-effects-2.png
│ │ ├── h1-conditional-effects-3.png
│ │ ├── h1-conditional-effects-4.png
│ │ ├── h1-plots-defacto-1.png
│ │ ├── h1-plots-dejure-1.png
│ │ ├── iptws-advocacy-1.png
│ │ ├── iptws-ccsi-1.png
│ │ ├── iptws-entry-1.png
│ │ ├── iptws-funding-1.png
│ │ ├── iptws-total-oda-1.png
│ │ ├── plot-cfx-mfx-advocacy-1.png
│ │ ├── plot-cfx-mfx-ccsi-1.png
│ │ ├── plot-cfx-mfx-ccsi-only-1.png
│ │ ├── plot-cfx-mfx-combined-1.png
│ │ ├── plot-cfx-mfx-defacto-1.png
│ │ ├── plot-cfx-mfx-entry-1.png
│ │ ├── plot-cfx-mfx-funding-1.png
│ │ ├── plot-cfx-mfx-repress-1.png
│ │ ├── plot-cfx-mfx-total-1.png
│ │ ├── plot-cfx-predictions-ccsi-1.png
│ │ ├── plot-cfx-predictions-combined-1.png
│ │ ├── plot-cfx-predictions-defacto-1.png
│ │ ├── plot-cfx-range-advocacy-1.png
│ │ ├── plot-cfx-range-ccsi-1.png
│ │ ├── plot-cfx-range-entry-1.png
│ │ ├── plot-cfx-range-funding-1.png
│ │ ├── plot-cfx-range-repress-1.png
│ │ ├── plot-cfx-range-total-1.png
│ │ ├── plot-denom-ppcheck-1.png
│ │ ├── plot-denom-trace-1.png
│ │ ├── plot-denom-trank-1.png
│ │ ├── plot-iptws-advocacy-1.png
│ │ ├── plot-iptws-ccsi-1.png
│ │ ├── plot-iptws-csrepress-1.png
│ │ ├── plot-iptws-entry-1.png
│ │ ├── plot-iptws-funding-1.png
│ │ ├── plot-iptws-total-oda-1.png
│ │ ├── plot-num-ppcheck-1.png
│ │ ├── plot-num-trace-1.png
│ │ ├── plot-num-trank-1.png
│ │ ├── plot-outcome-ppcheck-1.png
│ │ ├── plot-outcome-priors-1.png
│ │ ├── plot-outcome-trace-1.png
│ │ ├── plot-outcome-trank-1.png
│ │ ├── plot-prop-zero-hu-1.png
│ │ ├── plot-weight-priors-1.png
│ │ └── plot-zero-oda-1.png
│ ├── software-citations
│ └── execute-results
│ │ └── html.json
│ ├── targets
│ └── execute-results
│ │ └── html.json
│ └── why-hierarchical-models
│ ├── execute-results
│ └── html.json
│ └── figure-html
│ ├── panel-structure-svg-1.dvi
│ ├── panel-structure-svg-1.svg
│ └── plot-biggest-movers-1.png
├── _quarto.yml
├── _renv_packages.R
├── _targets.R
├── _targets_packages.R
├── data
├── DO-NOT-EDIT-ANY-FILES-IN-HERE-BY-HAND
└── manual_data
│ ├── oecd_dac_countries.csv
│ ├── purpose_codes_contention.csv
│ └── purpose_codes_contention_WILL_BE_OVERWRITTEN.csv
├── deploy.sh
├── index.qmd
├── manuscript
├── .gitignore
├── _extensions
│ └── andrewheiss
│ │ ├── hikmah-manuscript
│ │ ├── _extension.yml
│ │ ├── include-in-header.tex
│ │ ├── partials
│ │ │ ├── before-body.tex
│ │ │ └── title.tex
│ │ ├── styles
│ │ │ ├── reference.docx
│ │ │ └── reference.odt
│ │ └── templates
│ │ │ └── odt-manuscript.odt
│ │ ├── hikmah
│ │ ├── _extension.yml
│ │ ├── include-in-header.tex
│ │ ├── partials
│ │ │ ├── before-body.tex
│ │ │ ├── title-block.html
│ │ │ └── title.tex
│ │ └── styles
│ │ │ └── pretty.scss
│ │ └── wordcount
│ │ ├── _extension.yml
│ │ ├── citeproc.lua
│ │ └── wordcount.lua
├── _output.yaml
├── _quarto-ms.yml
├── _quarto-nice.yml
├── _quarto.yml
├── csl
│ ├── apa.csl
│ └── chicago-author-date.csl
├── manuscript.Rmd
├── manuscript.qmd
└── references.json
├── notebook
├── _metadata.yml
├── causal-model.qmd
├── design-details.qmd
├── estimands.qmd
├── general-analysis.qmd
├── get-merge-data.qmd
├── html
│ ├── custom.scss
│ └── linux-libertine-woff
│ │ ├── LinLibertine_DR.woff
│ │ ├── LinLibertine_I.woff
│ │ ├── LinLibertine_M.woff
│ │ ├── LinLibertine_R.woff
│ │ ├── LinLibertine_RB.woff
│ │ ├── LinLibertine_RBI.woff
│ │ ├── LinLibertine_RI.woff
│ │ ├── LinLibertine_RZ.woff
│ │ ├── LinLibertine_RZI.woff
│ │ ├── example.html
│ │ └── style.css
├── img
│ ├── flowchart.png
│ └── rho-plot.png
├── manuscript.qmd
├── model-details.qmd
├── model-tricky-outcomes.qmd
├── models_aid-contentiousness.qmd
├── models_aid-recipients.qmd
├── models_total-aid.qmd
├── softbib.bib
├── software-citations.qmd
├── sparkplots
│ ├── contentiousness_bar_advocacy.pdf
│ ├── contentiousness_bar_advocacy.png
│ ├── contentiousness_bar_barriers_total.pdf
│ ├── contentiousness_bar_barriers_total.png
│ ├── contentiousness_bar_entry.pdf
│ ├── contentiousness_bar_entry.png
│ ├── contentiousness_bar_funding.pdf
│ ├── contentiousness_bar_funding.png
│ ├── contentiousness_bar_v2csreprss.pdf
│ ├── contentiousness_bar_v2csreprss.png
│ ├── contentiousness_bar_v2xcs_ccsi.pdf
│ ├── contentiousness_bar_v2xcs_ccsi.png
│ ├── oda_bar_advocacy.pdf
│ ├── oda_bar_advocacy.png
│ ├── oda_bar_barriers_total.pdf
│ ├── oda_bar_barriers_total.png
│ ├── oda_bar_entry.pdf
│ ├── oda_bar_entry.png
│ ├── oda_bar_funding.pdf
│ ├── oda_bar_funding.png
│ ├── oda_bar_v2csreprss.pdf
│ ├── oda_bar_v2csreprss.png
│ ├── oda_bar_v2xcs_ccsi.pdf
│ ├── oda_bar_v2xcs_ccsi.png
│ ├── recipient_bar_domestic_advocacy.pdf
│ ├── recipient_bar_domestic_advocacy.png
│ ├── recipient_bar_domestic_barriers_total.pdf
│ ├── recipient_bar_domestic_barriers_total.png
│ ├── recipient_bar_domestic_entry.pdf
│ ├── recipient_bar_domestic_entry.png
│ ├── recipient_bar_domestic_funding.pdf
│ ├── recipient_bar_domestic_funding.png
│ ├── recipient_bar_domestic_v2csreprss.pdf
│ ├── recipient_bar_domestic_v2csreprss.png
│ ├── recipient_bar_domestic_v2xcs_ccsi.pdf
│ ├── recipient_bar_domestic_v2xcs_ccsi.png
│ ├── recipient_bar_foreign_advocacy.pdf
│ ├── recipient_bar_foreign_advocacy.png
│ ├── recipient_bar_foreign_barriers_total.pdf
│ ├── recipient_bar_foreign_barriers_total.png
│ ├── recipient_bar_foreign_entry.pdf
│ ├── recipient_bar_foreign_entry.png
│ ├── recipient_bar_foreign_funding.pdf
│ ├── recipient_bar_foreign_funding.png
│ ├── recipient_bar_foreign_v2csreprss.pdf
│ ├── recipient_bar_foreign_v2csreprss.png
│ ├── recipient_bar_foreign_v2xcs_ccsi.pdf
│ └── recipient_bar_foreign_v2xcs_ccsi.png
├── targets.qmd
└── why-hierarchical-models.qmd
├── renv.lock
├── renv
├── .gitignore
├── activate.R
└── settings.dcf
└── testy-turtle.Rproj
/.Rprofile:
--------------------------------------------------------------------------------
1 | source("renv/activate.R")
2 |
3 | # Add Stan's repo as a usable repo
4 | # Thanks TJ Mahr: https://github.com/stan-dev/cmdstanr/issues/552#issuecomment-930232573
5 | # options(repos = c(CRAN = "https://cloud.r-project.org",
6 | # stan = "https://mc-stan.org/r-packages/"))
7 |
--------------------------------------------------------------------------------
/.gitattributes:
--------------------------------------------------------------------------------
1 | # Auto detect text files and perform LF normalization
2 | * text=auto
3 |
--------------------------------------------------------------------------------
/.gitignore:
--------------------------------------------------------------------------------
1 | # R stuff
2 | .Rproj.user
3 | .Rhistory
4 | .RData
5 |
6 | # Data stuff
7 | # (ignore for now)
8 | data/raw_data/
9 | data/derived_data/
10 |
11 | # Targets stuff
12 | _targets
13 | _targets.yaml
14 |
15 | # Site output
16 | **/_site/*
17 | **/site_libs/*
18 |
19 | # knitr and caching stuff
20 | **/*_files/*
21 | **/*_cache/*
22 | **/model_cache*
23 | *.log
24 |
25 | # Output
26 | # (ignore for now)
27 | analysis/output/
28 | manuscript/*.pdf
29 | manuscript/*.docx
30 | manuscript/*.odt
31 |
32 | # Miscellaneous
33 | *.~lock.*
34 | .DS_Store
35 | .dropbox
36 | Icon?
37 | admin/*
38 | sandbox/*
39 |
40 | # Script for sending things to RStudio's Background Jobs panel
41 | job-stuff.R
42 |
43 | /.quarto/
44 |
45 | /.luarc.json
46 |
--------------------------------------------------------------------------------
/CONDUCT.md:
--------------------------------------------------------------------------------
1 | # Contributor Code of Conduct
2 |
3 | As contributors and maintainers of this project, we pledge to respect all people who
4 | contribute through reporting issues, posting feature requests, updating documentation,
5 | submitting pull requests or patches, and other activities.
6 |
7 | We are committed to making participation in this project a harassment-free experience for
8 | everyone, regardless of level of experience, gender, gender identity and expression,
9 | sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.
10 |
11 | Examples of unacceptable behavior by participants include the use of sexual language or
12 | imagery, derogatory comments or personal attacks, trolling, public or private harassment,
13 | insults, or other unprofessional conduct.
14 |
15 | Project maintainers have the right and responsibility to remove, edit, or reject comments,
16 | commits, code, wiki edits, issues, and other contributions that are not aligned to this
17 | Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed
18 | from the project team.
19 |
20 | Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by
21 | opening an issue or contacting one or more of the project maintainers.
22 |
23 | This Code of Conduct is adapted from the Contributor Covenant
24 | (http:contributor-covenant.org), version 1.0.0, available at
25 | http://contributor-covenant.org/version/1/0/0/
26 |
--------------------------------------------------------------------------------
/CONTRIBUTING.md:
--------------------------------------------------------------------------------
1 | # Contributing
2 |
3 | We love pull requests from everyone. By participating in this project, you
4 | agree to abide by our [code of conduct](CONDUCT.md).
5 |
6 | ## Getting Started
7 |
8 | * Make sure you have a [GitHub account](https://github.com/signup/free). If you are not familar with git and GitHub, take a look at to get started.
9 | * [Submit a post for your issue](https://github.com///issues/), assuming one does not already exist.
10 | * Clearly describe your issue, including steps to reproduce when it is a bug, or some justification for a proposed improvement.
11 | * [Fork](https://github.com///#fork-destination-box) the repository on GitHub to make a copy of the repository on your account. Or use this line in your shell terminal:
12 |
13 | `git clone git@github.com:your-username/.git`
14 |
15 | ## Making changes
16 |
17 | * Edit the files, save often, and make commits of logical units, where each commit indicates one concept
18 | * Follow our [style guide](http://adv-r.had.co.nz/Style.html).
19 | * Make sure you write [good commit messages](http://tbaggery.com/2008/04/19/a-note-about-git-commit-messages.html).
20 | * Make sure you have added the necessary tests for your code changes.
21 | * Run _all_ the tests using `devtools::check()` to assure nothing else was accidentally broken.
22 | * If you need help or unsure about anything, post an update to [your issue](https://github.com///issues/).
23 |
24 | ## Submitting your changes
25 |
26 | Push to your fork and [submit a pull request](https://github.com///compare/).
27 |
28 | At this point you're waiting on us. We like to at least comment on pull requests
29 | within a few days (and, typically, one business day). We may suggest
30 | some changes or improvements or alternatives.
31 |
32 | Some things you can do that will increase the chance that your pull request is accepted:
33 |
34 | * Engage in discussion on [your issue](https://github.com///issues/).
35 | * Be familiar with the backround literature cited in the [README](README.Rmd)
36 | * Write tests that pass.
37 | * Follow our [code style guide](http://adv-r.had.co.nz/Style.html).
38 | * Write a [good commit message](http://tbaggery.com/2008/04/19/a-note-about-git-commit-messages.html).
39 |
40 |
41 |
42 |
--------------------------------------------------------------------------------
/LICENSE.md:
--------------------------------------------------------------------------------
1 | # MIT License
2 |
3 | Copyright (c) 2021 Andrew Heiss and Suparna Chaudhry
4 |
5 | Permission is hereby granted, free of charge, to any person obtaining a copy
6 | of this software and associated documentation files (the "Software"), to deal
7 | in the Software without restriction, including without limitation the rights
8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9 | copies of the Software, and to permit persons to whom the Software is
10 | furnished to do so, subject to the following conditions:
11 |
12 | The above copyright notice and this permission notice shall be included in all
13 | copies or substantial portions of the Software.
14 |
15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21 | SOFTWARE.
22 |
--------------------------------------------------------------------------------
/R/funs_models-iptw.R:
--------------------------------------------------------------------------------
1 | # Utility functions -------------------------------------------------------
2 |
3 | cumprod_na <- function(x) {
4 | x[is.na(x)] <- 1
5 | return(cumprod(x))
6 | }
7 |
8 | cumsum_na <- function(x) {
9 | x[is.na(x)] <- 0
10 | return(cumsum(x))
11 | }
12 |
13 | # Via https://stackoverflow.com/a/55323097/120898
14 | lhs <- function(x) {
15 | if (attr(terms(as.formula(x)), which = "response")) {
16 | all.vars(x)[1]
17 | } else {
18 | NULL
19 | }
20 | }
21 |
22 |
23 | # IPTWs -------------------------------------------------------------------
24 |
25 | create_iptws <- function(dat, wt_model) {
26 | withr::with_seed(bayes_settings$seed$general, {
27 | # Numerator
28 |
29 | # Predictions
30 | # predict.brmsfit() is an alias of posterior_predict(). The main difference is
31 | # that it summarizes the predictions automatically and returns a matrix with
32 | # columns for the average, error, and credible interval bounds
33 | pred_num <- predict(wt_model$model_num, newdata = dat, re_formula = NULL)
34 |
35 | # Residuals
36 | # residuals.brmsfit() is an alias of predictive_error.brmsfit(). Like
37 | # predict.brmsfit(), it automatically summarizes the results *and* it allows you
38 | # to specify what kind of predictions to use. By default it uses epreds, but we
39 | # want regular full posterior predictions
40 | resid_num <- residuals(wt_model$model_num, newdata = dat,
41 | re_formula = NULL, method = "posterior_predict")
42 |
43 | lhs_num <- lhs(wt_model$model_num$formula$formula)
44 |
45 | num_actual <- dnorm(dat[[lhs_num]],
46 | pred_num[,1],
47 | sd(resid_num[,1], na.rm = TRUE))
48 |
49 | # Denominator
50 | pred_denom <- predict(wt_model$model_denom, newdata = dat, re_formula = NULL)
51 | resid_denom <- residuals(wt_model$model_denom, newdata = dat,
52 | re_formula = NULL, method = "posterior_predict")
53 | lhs_denom <- lhs(wt_model$model_denom$formula$formula)
54 |
55 | denom_actual <- dnorm(dat[[lhs_denom]],
56 | pred_denom[,1],
57 | sd(resid_denom[,1], na.rm = TRUE))
58 |
59 | dat <- dat %>%
60 | mutate(weights_sans_time = num_actual / denom_actual) %>%
61 | group_by(gwcode) %>%
62 | mutate(iptw = cumprod_na(weights_sans_time)) %>%
63 | ungroup()
64 | })
65 |
66 | return(dat)
67 | }
68 |
69 |
70 | # Marginal and conditional effects ----------------------------------------
71 |
72 | f_mfx_cfx_multiple <- function(model_total, model_advocacy, model_entry,
73 | model_funding, model_ccsi, model_repress) {
74 | library(marginaleffects)
75 |
76 | set.seed(bayes_settings$seed$general)
77 |
78 | total <- marginaleffects(
79 | model_total,
80 | newdata = datagrid(year_c = 0,
81 | barriers_total = seq(0, 10, 1)),
82 | variables = "barriers_total",
83 | type = "response",
84 | re_formula = NA
85 | )
86 |
87 | advocacy <- marginaleffects(
88 | model_advocacy,
89 | newdata = datagrid(year_c = 0,
90 | advocacy = seq(0, 2, 1)),
91 | variables = "advocacy",
92 | type = "response",
93 | re_formula = NA
94 | )
95 |
96 | entry <- marginaleffects(
97 | model_entry,
98 | newdata = datagrid(year_c = 0,
99 | entry = seq(0, 3, 1)),
100 | variables = "entry",
101 | type = "response",
102 | re_formula = NA
103 | )
104 |
105 | funding <- marginaleffects(
106 | model_funding,
107 | newdata = datagrid(year_c = 0,
108 | funding = seq(0, 4, 1)),
109 | variables = "funding",
110 | type = "response",
111 | re_formula = NA
112 | )
113 |
114 | ccsi <- marginaleffects(
115 | model_ccsi,
116 | newdata = datagrid(year_c = 0,
117 | v2xcs_ccsi = seq(0, 1, 0.5)),
118 | variables = "v2xcs_ccsi",
119 | type = "response",
120 | re_formula = NA
121 | )
122 |
123 | repress <- marginaleffects(
124 | model_repress,
125 | newdata = datagrid(year_c = 0,
126 | v2csreprss = c(-2, 0, 2)),
127 | variables = "v2csreprss",
128 | type = "response",
129 | re_formula = NA
130 | )
131 |
132 | return(lst(total, advocacy, entry, funding, ccsi, repress))
133 | }
134 |
135 | f_mfx_cfx_single <- function(model_total, model_advocacy, model_entry,
136 | model_funding, model_ccsi, model_repress) {
137 | library(marginaleffects)
138 |
139 | set.seed(bayes_settings$seed$general)
140 |
141 | total <- marginaleffects(
142 | model_total,
143 | newdata = datagrid(year_c = 0, barriers_total = 1),
144 | variables = "barriers_total",
145 | type = "response",
146 | re_formula = NA
147 | )
148 |
149 | advocacy <- marginaleffects(
150 | model_advocacy,
151 | newdata = datagrid(year_c = 0, advocacy = 1),
152 | variables = "advocacy",
153 | type = "response",
154 | re_formula = NA
155 | )
156 |
157 | entry <- marginaleffects(
158 | model_entry,
159 | newdata = datagrid(year_c = 0, entry = 1),
160 | variables = "entry",
161 | type = "response",
162 | re_formula = NA
163 | )
164 |
165 | funding <- marginaleffects(
166 | model_funding,
167 | newdata = datagrid(year_c = 0, funding = 1),
168 | variables = "funding",
169 | type = "response",
170 | re_formula = NA
171 | )
172 |
173 | ccsi <- marginaleffects(
174 | model_ccsi,
175 | newdata = datagrid(year_c = 0, v2xcs_ccsi = 0.5),
176 | variables = "v2xcs_ccsi",
177 | type = "response",
178 | re_formula = NA
179 | )
180 |
181 | repress <- marginaleffects(
182 | model_repress,
183 | newdata = datagrid(year_c = 0, v2csreprss = 0),
184 | variables = "v2csreprss",
185 | type = "response",
186 | re_formula = NA
187 | )
188 |
189 | return(lst(total, advocacy, entry, funding, ccsi, repress))
190 | }
191 |
--------------------------------------------------------------------------------
/R/funs_notebook.R:
--------------------------------------------------------------------------------
1 | # This is adapted from TJ Mahr's {notestar}
2 | # (https://github.com/tjmahr/notestar/blob/main/R/tar-notebook.R).
3 | #
4 | # He did all the hard work figuring out how to dynamically generate targets
5 | # based on a bunch of files, while also checking for targets dependencies with
6 | # tarchetypes::tar_knitr_deps(), based on this issue in {tarchetypes}:
7 | # https://github.com/ropensci/tarchetypes/issues/23
8 | #
9 | # I just adapted it for an R Markdown website
10 |
11 | notebook_rmd_collate <- function(dir_notebook = "analysis") {
12 | index <- file.path(dir_notebook, "index.Rmd")
13 | posts <- list.files(
14 | path = dir_notebook,
15 | pattern = ".*.Rmd",
16 | full.names = TRUE
17 | )
18 | unique(c(index, posts))
19 | }
20 |
21 | rmd_to_html <- function(x) gsub("[.]Rmd$", ".html", x = x)
22 | html_to_rmd <- function(x) gsub("[.]html$", ".Rmd", x = x)
23 |
24 | lazy_list <- function(...) {
25 | q <- rlang::enexprs(..., .named = TRUE, .check_assign = TRUE)
26 | data <- list()
27 | for (x in seq_along(q)) {
28 | data[names(q[x])] <- list(rlang::eval_tidy(q[[x]], data = data))
29 | }
30 | data
31 | }
32 |
33 | knit_notebook_page <- function(rmd_in, html_out) {
34 | rmarkdown::render_site(rmd_in, encoding = "UTF-8")
35 | html_out
36 | }
37 |
38 | tar_notebook_pages <- function(
39 | dir_notebook = "analysis",
40 | dir_html = "analysis/_site",
41 | yaml_config = "analysis/_site.yml"
42 | ) {
43 |
44 | rmds <- notebook_rmd_collate(dir_notebook)
45 |
46 | values <- lazy_list(
47 | rmd_file = !! rmds,
48 | rmd_page_raw = basename(.data$rmd_file),
49 | rmd_page = make.names(.data$rmd_page_raw),
50 | sym_rmd_page = rlang::syms(.data$rmd_page),
51 | rmd_deps = lapply(.data$rmd_file, tarchetypes::tar_knitr_deps_expr),
52 | html_page = rmd_to_html(.data$rmd_page),
53 | html_page_raw = rmd_to_html(.data$rmd_page_raw),
54 | html_file = file.path(!! dir_html, .data$html_page_raw)
55 | )
56 |
57 | list(
58 | # Add _site.yml as a dependency
59 | # Have to use tar_target_raw() instead of tar_target() so that yaml_config is usable
60 | tar_target_raw("site_yml", yaml_config, format = "file"),
61 |
62 | # Prepare targets for each of the notebook pages
63 | tarchetypes::tar_eval_raw(
64 | quote(
65 | targets::tar_target(rmd_page, c(rmd_file, site_yml), format = "file")
66 | ),
67 | values = values
68 | ),
69 |
70 | tarchetypes::tar_eval_raw(
71 | quote(
72 | targets::tar_target(
73 | html_page,
74 | command = {
75 | rmd_deps
76 | sym_rmd_page
77 | knit_notebook_page(rmd_file, html_file);
78 | html_file
79 | },
80 | format = "file"
81 | )
82 | ),
83 | values = values
84 | )
85 | )
86 | }
87 |
88 | copy_notebook_supporting_files <- function(rmd, ...) {
89 | rmarkdown::render_site(rmd, encoding = "UTF-8")
90 | }
91 |
--------------------------------------------------------------------------------
/R/graphics.R:
--------------------------------------------------------------------------------
1 | # https://carto.com/carto-colors/
2 | clrs <- list(Prism = rcartocolor::carto_pal(n = 12, "Prism"),
3 | PurpOr = rcartocolor::carto_pal(7, "PurpOr"),
4 | Emrld = rcartocolor::carto_pal(7, "Emrld"),
5 | Teal = rcartocolor::carto_pal(7, "Teal"),
6 | Peach = rcartocolor::carto_pal(7, "Peach"),
7 | Sunset = rcartocolor::carto_pal(7, "Sunset"))
8 |
9 | set_annotation_fonts <- function() {
10 | ggplot2::update_geom_defaults("label", list(family = "Inter", face = "plain"))
11 | ggplot2::update_geom_defaults("text", list(family = "Inter", face = "plain"))
12 | }
13 |
14 | theme_donors <- function(base_size = 11, base_family = "Inter", prior = FALSE) {
15 | ret <- theme_bw(base_size, base_family) +
16 | theme(panel.background = element_rect(fill = "#ffffff", colour = NA),
17 | plot.title = element_text(size = rel(1.1), vjust = 1.2,
18 | family = "Inter", face = "bold"),
19 | plot.subtitle = element_text(size = rel(0.8),
20 | family = "Inter", face = "plain"),
21 | plot.caption = element_text(margin = margin(t = 10), size = rel(0.6),
22 | family = "Inter", face = "plain"),
23 | panel.border = element_rect(color = "grey50", fill = NA, linewidth = 0.15),
24 | panel.spacing = unit(1, "lines"),
25 | panel.grid.minor = element_blank(),
26 | panel.grid.major = element_line(linewidth = 0.25, colour = "grey90"),
27 | axis.line = element_blank(),
28 | axis.ticks = element_blank(),
29 | axis.title = element_text(size = rel(0.8),
30 | family = "Inter", face = "bold"),
31 | axis.title.y = element_text(margin = margin(r = 10)),
32 | axis.title.x = element_text(margin = margin(t = 10)),
33 | legend.position = "bottom",
34 | legend.title = element_text(size = rel(0.8)),
35 | legend.key.size = unit(0.7, "line"),
36 | legend.key = element_blank(),
37 | legend.spacing = unit(0.1, "lines"),
38 | legend.margin = margin(t = 0),
39 | strip.text = element_text(size = rel(0.9), hjust = 0,
40 | family = "Inter", face = "bold"),
41 | strip.background = element_rect(fill = "white", colour = NA))
42 |
43 | if (prior) {
44 | ret <- ret +
45 | theme(panel.grid.major = element_blank(),
46 | axis.title.y = element_blank(),
47 | axis.text.y = element_blank(),
48 | panel.border = element_blank())
49 | } else {
50 | ret
51 | }
52 | }
53 |
54 | theme_donors_map <- function(base_size = 9, base_family = "Inter") {
55 | ret <- theme_void(base_size, base_family) +
56 | theme(plot.background = element_rect(fill = "#ffffff", colour = NA),
57 | legend.position = "bottom")
58 |
59 | ret
60 | }
61 |
62 | #' Convert mms to pts
63 | #'
64 | #' Convert units specified in millimeters to typographic points. This is especially helpful when working with ggplot geoms that use size parameters
65 | #'
66 | #' @param x a numeric value (in millimeters)
67 | #'
68 | #' @return A numeric value (in points)
69 | #' @export
70 | #'
71 | #' @examples
72 | #' library(ggplot2)
73 | #'
74 | #' ggplot(mtcars, aes(x = mpg, y = wt)) +
75 | #' geom_point() +
76 | #' annotate(geom = "text", x = 20, y = 4,
77 | #' label = "Here's a label", size = pts(11))
78 | pts <- function(x) {
79 | as.numeric(grid::convertUnit(grid::unit(x, "pt"), "mm"))
80 | }
81 |
82 | # Functions for the sparkchart bar chart things in the results tables
83 | spark_bar <- function(df) {
84 | ggplot(df, aes(x = pd, y = "")) +
85 | geom_col(fill = "grey20") +
86 | geom_text(aes(label = pd_nice), hjust = 1.4, color = "white",
87 | size = 6, fontface = "bold") +
88 | scale_x_continuous(limits = c(0, 1), expand = c(0, 0)) +
89 | scale_y_discrete(expand = c(0, 0)) +
90 | theme_void() +
91 | theme(panel.background = element_rect(fill = "grey90", linewidth = 0))
92 | }
93 |
94 | save_sparks <- function(gg, name) {
95 | width <- 3
96 | height <- 0.45
97 |
98 | ggsave(glue("{name}.pdf"), gg,
99 | width = width, height = height,
100 | device = cairo_pdf)
101 |
102 | ggsave(glue("{name}.png"), gg,
103 | width = width, height = height,
104 | res = 300, device = ragg::agg_png)
105 |
106 | return(c(pdf = glue("{name}.pdf"), png = glue("{name}.png")))
107 | }
108 |
--------------------------------------------------------------------------------
/R/misc.R:
--------------------------------------------------------------------------------
1 | matrix_from_vector <- function(x, ncol) {
2 | n_balanced <- ceiling(length(x) / ncol) * ncol
3 | matrix(c(x, rep(NA, n_balanced - length(x))), ncol = ncol)
4 | }
5 |
--------------------------------------------------------------------------------
/README.md:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 | # Are Donors Really Responding? Analyzing the Impact of Global Restrictions on NGOs
5 |
6 |
7 |
8 |
9 | ### 🙄🐢: Note on “testy turtle” project name
10 |
11 | Because project titles change all the time with revisions, rewriting,
12 | and peer review, we used [**codename**](http://svmiller.com/codename/)
13 | to generate an
14 | [Ubuntu-style](https://wiki.ubuntu.com/DevelopmentCodeNames)
15 | internal-to-us project name that won’t change. The seed `53879` was
16 | generated with random atmospheric noise at
17 | [random.org](https://www.random.org/).
18 |
19 | ``` r
20 | library(codename)
21 | codename_message()
22 | #> code name generated by {codename} v.0.4.0
23 |
24 | codename(seed = 53879, type = "ubuntu")
25 | #> [1] "testy turtle"
26 | ```
27 |
28 | ## Licenses
29 |
30 | **Text and figures:** All prose and images are licensed under Creative
31 | Commons ([CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)).
32 |
33 | **Code:** All code is licensed under the [MIT License](LICENSE.md).
34 |
35 | ## Contributions and Code of Conduct
36 |
37 | We welcome contributions from everyone. Before you get started, please
38 | see our [contributor guidelines](CONTRIBUTING.md). Please note that this
39 | project is released with a [Contributor Code of
40 | Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).
41 | By contributing to this project, you agree to abide by its terms.
42 |
--------------------------------------------------------------------------------
/README.qmd:
--------------------------------------------------------------------------------
1 | ---
2 | format: gfm
3 | ---
4 |
5 |
6 |
7 | ```{r setup, include=FALSE}
8 | knitr::opts_chunk$set(
9 | collapse = TRUE,
10 | comment = "#>",
11 | fig.path = "README-",
12 | fig.retina = 3
13 | )
14 |
15 | library(emoji)
16 | ```
17 |
18 | # Are Donors Really Responding? Analyzing the Impact of Global Restrictions on NGOs
19 |
20 |
21 |
22 |
23 |
24 | ### `r emoji_glue(":roll_eyes::turtle:")`: Note on "testy turtle" project name
25 |
26 | Because project titles change all the time with revisions, rewriting, and peer review, we used [**codename**](http://svmiller.com/codename/) to generate an [Ubuntu-style](https://wiki.ubuntu.com/DevelopmentCodeNames) internal-to-us project name that won't change. The seed `53879` was generated with random atmospheric noise at [random.org](https://www.random.org/).
27 |
28 | ```{r generate-code-name, eval=FALSE}
29 | library(codename)
30 | codename_message()
31 | #> code name generated by {codename} v.0.4.0
32 |
33 | codename(seed = 53879, type = "ubuntu")
34 | #> [1] "testy turtle"
35 | ```
36 |
37 |
38 | ## Licenses
39 |
40 | **Text and figures:** All prose and images are licensed under Creative Commons ([CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)).
41 |
42 | **Code:** All code is licensed under the [MIT License](LICENSE.md).
43 |
44 |
45 | ## Contributions and Code of Conduct
46 |
47 | We welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
48 |
--------------------------------------------------------------------------------
/_extensions/quarto-ext/fontawesome/_extension.yml:
--------------------------------------------------------------------------------
1 | title: Font Awesome support
2 | author: Carlos Scheidegger
3 | version: 1.0.0
4 | quarto-required: ">=1.2.198"
5 | contributes:
6 | shortcodes:
7 | - fontawesome.lua
8 |
--------------------------------------------------------------------------------
/_extensions/quarto-ext/fontawesome/assets/css/latex-fontsize.css:
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1 | .fa-tiny {
2 | font-size: 0.5em;
3 | }
4 | .fa-scriptsize {
5 | font-size: 0.7em;
6 | }
7 | .fa-footnotesize {
8 | font-size: 0.8em;
9 | }
10 | .fa-small {
11 | font-size: 0.9em;
12 | }
13 | .fa-normalsize {
14 | font-size: 1em;
15 | }
16 | .fa-large {
17 | font-size: 1.2em;
18 | }
19 | .fa-Large {
20 | font-size: 1.5em;
21 | }
22 | .fa-LARGE {
23 | font-size: 1.75em;
24 | }
25 | .fa-huge {
26 | font-size: 2em;
27 | }
28 | .fa-Huge {
29 | font-size: 2.5em;
30 | }
31 |
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/_extensions/quarto-ext/fontawesome/assets/webfonts/fa-brands-400.ttf:
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1 | local function ensureLatexDeps()
2 | quarto.doc.use_latex_package("fontawesome5")
3 | end
4 |
5 | local function ensureHtmlDeps()
6 | quarto.doc.add_html_dependency({
7 | name = 'fontawesome6',
8 | version = '0.1.0',
9 | stylesheets = {'assets/css/all.css', 'assets/css/latex-fontsize.css'}
10 | })
11 | end
12 |
13 | local function isEmpty(s)
14 | return s == nil or s == ''
15 | end
16 |
17 | local function isValidSize(size)
18 | local validSizes = {
19 | "tiny",
20 | "scriptsize",
21 | "footnotesize",
22 | "small",
23 | "normalsize",
24 | "large",
25 | "Large",
26 | "LARGE",
27 | "huge",
28 | "Huge"
29 | }
30 | for _, v in ipairs(validSizes) do
31 | if v == size then
32 | return size
33 | end
34 | end
35 | return ""
36 | end
37 |
38 | return {
39 | ["fa"] = function(args, kwargs)
40 |
41 | local group = "solid"
42 | local icon = pandoc.utils.stringify(args[1])
43 | if #args > 1 then
44 | group = icon
45 | icon = pandoc.utils.stringify(args[2])
46 | end
47 |
48 | local title = pandoc.utils.stringify(kwargs["title"])
49 | if not isEmpty(title) then
50 | title = " title=\"" .. title .. "\""
51 | end
52 |
53 | local label = pandoc.utils.stringify(kwargs["label"])
54 | if isEmpty(label) then
55 | label = " aria-label=\"" .. icon .. "\""
56 | else
57 | label = " aria-label=\"" .. label .. "\""
58 | end
59 |
60 | local size = pandoc.utils.stringify(kwargs["size"])
61 |
62 | -- detect html (excluding epub which won't handle fa)
63 | if quarto.doc.is_format("html:js") then
64 | ensureHtmlDeps()
65 | if not isEmpty(size) then
66 | size = " fa-" .. size
67 | end
68 | return pandoc.RawInline(
69 | 'html',
70 | ""
71 | )
72 | -- detect pdf / beamer / latex / etc
73 | elseif quarto.doc.is_format("pdf") then
74 | ensureLatexDeps()
75 | if isEmpty(isValidSize(size)) then
76 | return pandoc.RawInline('tex', "\\faIcon{" .. icon .. "}")
77 | else
78 | return pandoc.RawInline('tex', "{\\" .. size .. "\\faIcon{" .. icon .. "}}")
79 | end
80 | else
81 | return pandoc.Null()
82 | end
83 | end
84 | }
85 |
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1 | {
2 | "hash": "b18fc0f0ab98833ae3cc9dfeb441fdff",
3 | "result": {
4 | "markdown": "---\ntitle: \"Why hierarchical models?\"\n---\n\n\n\n::: {.cell layout-align=\"center\"}\n\n```{.r .cell-code}\nlibrary(tidyverse)\nlibrary(targets)\nlibrary(scales)\nlibrary(patchwork)\n\ntar_config_set(store = here::here('_targets'),\n script = here::here('_targets.R'))\n\nfont_opts <- list(extra.preamble = c(\"\\\\usepackage{libertine}\", \n \"\\\\usepackage{libertinust1math}\"),\n dvisvgm.opts = \"--font-format=woff\")\n\n# Load data \n# Plotting functions\ninvisible(list2env(tar_read(graphic_functions), .GlobalEnv))\ninvisible(list2env(tar_read(misc_funs), .GlobalEnv))\n\ndf_country_aid <- tar_read(country_aid_final)\ndf_country_aid_laws <- filter(df_country_aid, laws)\n```\n:::\n\n\n\n# Hierarchical structure\n\n\n\n\n\nOur data includes information about 142 countries across 24 years (from 1990–2013). This kind of time series cross-sectional (TSCS) data reflects a natural hierarchical structure, with repeated yearly observations nested within countries ([see this whole guide I wrote](https://www.andrewheiss.com/blog/2021/12/01/multilevel-models-panel-data-guide/) because of this exact project)\n\n\n::: {.cell layout-align=\"center\" engine.opts='{\"extra.preamble\":[\"\\\\usepackage{libertine}\",\"\\\\usepackage{libertinust1math}\"],\"dvisvgm.opts\":\"--font-format=woff\"}'}\n::: {.cell-output-display}\n{fig-align='center' width=100%}\n:::\n:::\n\n::: {.cell layout-align=\"center\"}\n\n```{.r .cell-code}\nbiggest_movers <- df_country_aid_laws %>% \n group_by(country) %>% \n filter(!any(total_oda == 0)) %>% \n summarize(across(c(v2csreprss, total_oda), lst(min, max, diff = ~max(.) - min(.))))\n\ntop_overall <- top_n(biggest_movers, 15, v2csreprss_diff) %>% \n filter(country %in% top_n(biggest_movers, 15, total_oda_diff)$country) %>% \n top_n(3, v2csreprss_diff)\n\ndf_cs_oda_highlight <- df_country_aid_laws %>% \n mutate(highlight_country = ifelse(country %in% top_overall$country, \n country, \"Other\"),\n highlight_country = factor(highlight_country, ordered = TRUE),\n highlight_country = fct_relevel(highlight_country, \"Other\", after = Inf)) %>% \n mutate(highlight = highlight_country != \"Other\")\n\nggplot(df_cs_oda_highlight, aes(x = v2csreprss, y = total_oda, group = country)) +\n geom_point(size = 0.15, alpha = 0.15) +\n geom_smooth(method = \"lm\", aes(group = NULL), color = clrs$Prism[6], \n linewidth = 1.25, linetype = \"21\", se = FALSE, formula = y ~ x) +\n geom_path(aes(color = highlight_country, size = highlight),\n arrow = arrow(type = \"open\", angle = 30, length = unit(0.75, \"lines\")),\n key_glyph = \"timeseries\") +\n scale_y_continuous(trans = \"log1p\", breaks = c(1e7, 1e8, 1e9, 1e10, 1e11),\n labels = label_dollar(scale_cut = cut_short_scale())) +\n scale_size_manual(values = c(0.075, 1.25), guide = \"none\") +\n scale_color_manual(values = c(clrs$Prism[2], clrs$Prism[7], clrs$Prism[9], \"grey50\"),\n guide = guide_legend(override.aes = list(linewidth = 1))) +\n coord_cartesian(ylim = c(1e7, 1e11)) +\n labs(x = \"Civil society repression\\n(Higher values represent less repression)\",\n y = \"Total ODA\", color = NULL, size = NULL) +\n theme_donors()\n## Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.\n## ℹ Please use `linewidth` instead.\n```\n\n::: {.cell-output-display}\n{fig-align='center' width=80%}\n:::\n:::\n",
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1 | project:
2 | title: "NGO Crackdowns and Foreign Aid"
3 | type: website
4 |
5 | preview:
6 | port: 4444
7 | browser: true
8 | watch-inputs: false
9 | navigate: true
10 |
11 | render:
12 | # Render all .qmd files
13 | - "**/*.qmd"
14 |
15 | # Don't render anything in the manuscript folder because otherwise all the
16 | # output gets placed in _site/ only, which is annoying. Instead this folder
17 | # needs to be rendered separately, and *before* the overall website project
18 | # (which is doable since this whole build process is orchestrated by targets)
19 | - "!manuscript/"
20 |
21 | resources:
22 | # But *do* place the outputs from the manuscript in the rendered site folder
23 | - "manuscript/output/"
24 | - "manuscript/output-ms/"
25 |
26 | execute:
27 | # Re-render only when source changes
28 | freeze: auto
29 |
30 | bibliography: manuscript/bibliography.bib
31 | csl: manuscript/csl/chicago-author-date.csl
32 |
33 | website:
34 | repo-url: "https://github.com/andrewheiss/testy-turtle"
35 | repo-actions: [edit, issue]
36 |
37 | page-navigation: true
38 |
39 | navbar:
40 | pinned: true
41 | background: primary
42 | search: true
43 | left:
44 | - text: "Causal strategy"
45 | file: notebook/causal-model.qmd
46 | - text: "Data"
47 | file: notebook/get-merge-data.qmd
48 | - text: "General analysis"
49 | file: notebook/general-analysis.qmd
50 | - text: "Models"
51 | file: notebook/model-details.qmd
52 | - text: "Manuscript"
53 | file: notebook/manuscript.qmd
54 | right:
55 | - icon: github
56 | aria-label: github
57 | href: https://github.com/andrewheiss/testy-turtle
58 |
59 | sidebar:
60 | - title: "Models"
61 | style: docked
62 | background: light
63 | contents:
64 | - section: "Model background"
65 | contents:
66 | - notebook/why-hierarchical-models.qmd
67 | - notebook/model-tricky-outcomes.qmd
68 | - section: "Actual models"
69 | contents:
70 | - notebook/model-details.qmd
71 | - notebook/models_total-aid.qmd
72 | - notebook/models_aid-contentiousness.qmd
73 | - notebook/models_aid-recipients.qmd
74 |
75 | - title: "Causal strategy"
76 | contents:
77 | - section: "Causal strategy"
78 | contents:
79 | - notebook/causal-model.qmd
80 | - notebook/estimands.qmd
81 |
82 | - title: "Data"
83 | contents:
84 | - section: "Data"
85 | contents:
86 | - notebook/get-merge-data.qmd
87 | - notebook/targets.qmd
88 |
89 | - title: "Manuscript"
90 | contents:
91 | - section: "Manuscript"
92 | contents:
93 | - notebook/manuscript.qmd
94 | - notebook/software-citations.qmd
95 | - section: "Miscellaneous"
96 | contents:
97 | - notebook/design-details.qmd
98 |
99 | page-footer:
100 | left: |
101 | Content {{< fa brands creative-commons >}} 2017–2023 by Suparna Chaudhry and Andrew Heiss
102 | All content licensed under a {{< fa brands creative-commons >}}
103 | {{< fa brands creative-commons-by >}} {{< fa brands creative-commons-nc >}}
104 | [Creative Commons Attribution-NonCommercial 4.0 International license (CC BY-NC 4.0)](https://creativecommons.org/licenses/by-nc/4.0/)
105 | right: |
106 | Made with {{< fa brands r-project >}} and [Quarto](https://quarto.org/)
107 | [View the source at {{< fa brands github >}} GitHub](https://github.com/andrewheiss/testy-turtle)
108 |
109 | format:
110 | html:
111 | theme:
112 | - zephyr
113 | - notebook/html/custom.scss
114 | toc: true
115 | toc-location: right
116 | code-fold: true
117 | code-tools: true
118 | highlight-style: monokai
119 |
120 | language:
121 | title-block-published: "Date"
122 |
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1 | library(testthat)
2 | library(zoo)
3 | library(car)
4 | library(emoji)
5 | library(Hmisc)
6 | library(bookdown)
7 | library(remotes)
8 | library(cmdstanr)
9 | library(latex2exp)
10 |
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1 | # Generated by targets::tar_renv(): do not edit by hand
2 | library(bs4Dash)
3 | library(clustermq)
4 | library(future)
5 | library(gt)
6 | library(markdown)
7 | library(pingr)
8 | library(qs)
9 | library(rstudioapi)
10 | library(shiny)
11 | library(shinybusy)
12 | library(shinyWidgets)
13 | library(tidyverse)
14 | library(visNetwork)
15 |
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1 | purpose_code_short,purpose_sector,purpose_category,purpose_contentiousness
2 | 100,Social,Social Infrastructure,Low
3 | 110,Social,Education,Low
4 | 111,Social,Education,Low
5 | 112,Social,Education,Low
6 | 113,Social,Education,Low
7 | 114,Social,Education,Low
8 | 120,Social,Health,Low
9 | 121,Social,Health,Low
10 | 122,Social,Health,Low
11 | 130,Social,Population,Low
12 | 140,Social,Water,Low
13 | 150,Social,Government,High
14 | 151,Social,Government,High
15 | 152,Social,Conflict,High
16 | 160,Social,Other,Low
17 | 200,Eco,Economic Infrastructure,Low
18 | 210,Eco,Transport,Low
19 | 220,Eco,Communication,Low
20 | 230,Eco,Energy,Low
21 | 240,Eco,Bank,Low
22 | 250,Eco,Business,Low
23 | 300,Prod,Production,Low
24 | 310,Prod,Agriculture,Low
25 | 311,Prod,Agriculture,Low
26 | 312,Prod,Forestry,Low
27 | 313,Prod,Fishing,Low
28 | 320,Prod,Industry,Low
29 | 321,Prod,Industry,Low
30 | 322,Prod,Mining,Low
31 | 323,Prod,Construction,Low
32 | 331,Prod,Trade,Low
33 | 332,Prod,Trade,Low
34 | 410,Multisector,Environment,Low
35 | 420,Multisector,Women in development,Low
36 | 430,Multisector,Other,Low
37 | 510,Non Sector,Programme Aid,Low
38 | 520,Non Sector,Food,Low
39 | 530,Non Sector,Programme Aid,Low
40 | 600,Non Sector,Debt,Low
41 | 700,Non Sector,Emergency,Low
42 | 720,Non Sector,Emergency,Low
43 | 730,Non Sector,Emergency,Low
44 | 740,Non Sector,Emergency,Low
45 | 910,Non Sector,Other,Low
46 | 920,Non Sector,Support to NGOs,Low
47 | 930,Non Sector,Other,Low
48 | 998,Non Sector,Other,Low
49 |
--------------------------------------------------------------------------------
/data/manual_data/purpose_codes_contention_WILL_BE_OVERWRITTEN.csv:
--------------------------------------------------------------------------------
1 | purpose_code_short,purpose_sector,purpose_category,purpose_contentiousness
2 | 100,Social,Social Infrastructure,
3 | 110,Social,Education,
4 | 111,Social,Education,
5 | 112,Social,Education,
6 | 113,Social,Education,
7 | 114,Social,Education,
8 | 120,Social,Health,
9 | 121,Social,Health,
10 | 122,Social,Health,
11 | 130,Social,Population,
12 | 140,Social,Water,
13 | 150,Social,Government,
14 | 151,Social,Government,
15 | 152,Social,Conflict,
16 | 160,Social,Other,
17 | 200,Eco,Economic Infrastructure,
18 | 210,Eco,Transport,
19 | 220,Eco,Communication,
20 | 230,Eco,Energy,
21 | 240,Eco,Bank,
22 | 250,Eco,Business,
23 | 300,Prod,Production,
24 | 310,Prod,Agriculture,
25 | 311,Prod,Agriculture,
26 | 312,Prod,Forestry,
27 | 313,Prod,Fishing,
28 | 320,Prod,Industry,
29 | 321,Prod,Industry,
30 | 322,Prod,Mining,
31 | 323,Prod,Construction,
32 | 331,Prod,Trade,
33 | 332,Prod,Trade,
34 | 410,Multisector,Environment,
35 | 420,Multisector,Women in development,
36 | 430,Multisector,Other,
37 | 510,Non Sector,Programme Aid,
38 | 520,Non Sector,Food,
39 | 530,Non Sector,Programme Aid,
40 | 600,Non Sector,Debt,
41 | 700,Non Sector,Emergency,
42 | 720,Non Sector,Emergency,
43 | 730,Non Sector,Emergency,
44 | 740,Non Sector,Emergency,
45 | 910,Non Sector,Other,
46 | 920,Non Sector,Support to NGOs,
47 | 930,Non Sector,Other,
48 | 998,Non Sector,Other,
49 |
--------------------------------------------------------------------------------
/deploy.sh:
--------------------------------------------------------------------------------
1 | REMOTE_HOST="cloud"
2 | REMOTE_DIR="~/sites/stats/public_html/testy-turtle"
3 | REMOTE_DEST=$REMOTE_HOST:$REMOTE_DIR
4 |
5 | echo "Uploading new changes to remote server..."
6 | echo
7 | rsync -crvP --delete _site/ $REMOTE_DEST
8 |
--------------------------------------------------------------------------------
/index.qmd:
--------------------------------------------------------------------------------
1 | ---
2 | title: "Are Donors Really Responding? Analyzing the Impact of Global Restrictions on NGOs"
3 | author: "Suparna Chaudhry and Andrew Heiss"
4 | format:
5 | html:
6 | code-tools: false
7 | toc: false
8 | toc-location: body
9 | ---
10 |
11 | ## Abstract
12 |
13 | The previous three decades have seen a proliferation of anti-NGO legislation throughout the world, resulting in increasingly restricted space for civil society organizations to provide services or engage in advocacy. This is worrisome for Western donors because they channel a large amount of foreign aid and democracy assistance funds through NGOs. How do donors respond to this legal crackdown on NGOs? We use original data on civil society restrictions across 148 countries from 1981–2013 to assess the impact of these restrictions on total flows of foreign aid, how aid is distributed, and which issues are funded. We find that additional anti-NGO legal barriers—in particular, barriers to advocacy—decrease the amount of foreign channeled to restrictive countries. Besides reducing the amount of aid, donors also redirect funds within restrictive countries, decreasing funds for politically sensitive causes in favor of tamer issues that are more compatible with the governments of those countries. Finally, donors—USAID in particular—channel more aid to domestic over foreign NGOs in order to assuage target country concerns about external interference in domestic politics. Our findings have worrying implications for donors in the foreign aid and democracy promotion community, whose projects may be unsustainable in the face of this legal crackdown.
14 |
15 | ## Code
16 |
17 | All the raw code and data for this paper is available in a [GitHub repository](https://github.com/andrewheiss/testy-turtle).
18 |
--------------------------------------------------------------------------------
/manuscript/.gitignore:
--------------------------------------------------------------------------------
1 | /.quarto/
2 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah-manuscript/_extension.yml:
--------------------------------------------------------------------------------
1 | title: Hikmah Manuscript
2 | author: Andrew Heiss
3 | version: 0.0.6
4 | contributes:
5 | formats:
6 | common:
7 | date-format: full
8 | docx:
9 | reference-doc: "styles/reference.docx"
10 | knitr:
11 | opts_chunk:
12 | dev: "ragg_png"
13 | dpi: 300
14 | out.width: "80%"
15 | odt:
16 | template: "templates/odt-manuscript.odt"
17 | reference-doc: "styles/reference.odt"
18 | knitr:
19 | opts_chunk:
20 | dev: "ragg_png"
21 | dpi: 300
22 | out.width: "80%"
23 | pdf:
24 | documentclass: article
25 | papersize: letter
26 | fontsize: 12pt
27 | linestretch: 2
28 |
29 | # Template pieces
30 | template-partials:
31 | - "partials/title.tex"
32 | - "partials/before-body.tex"
33 | include-in-header:
34 | - "include-in-header.tex"
35 |
36 | # Document styling
37 | geometry:
38 | - top=1in
39 | - bottom=1in
40 | - left=1in
41 | - right=1in
42 |
43 | # Citations and links
44 | colorlinks: true
45 | linkcolor: DarkSlateBlue
46 | urlcolor: DarkSlateBlue
47 | citecolor: DarkSlateBlue
48 | link-citations: true
49 |
50 | biblio-title: "References"
51 | biblio-config: false # Don't use the default template's biblatex commands
52 | cite-method: biblatex
53 | biblatex-chicago: false # Custom flag for enabling biblatex-chicago
54 | biblio-style: apa
55 | biblatexoptions:
56 | - backend=biber
57 |
58 | # The titlesec package provides its own mechanism for dealing with
59 | # inline/block headings, so we need to disable pandoc's support for it
60 | # (see https://stackoverflow.com/q/42916124/120898)
61 | block-headings: false
62 | # Indent paragraphs instead of adding space between them
63 | indent: true
64 | html:
65 | theme: styles/pretty.scss
66 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah-manuscript/include-in-header.tex:
--------------------------------------------------------------------------------
1 | % -----------------------
2 | % CUSTOM PREAMBLE STUFF
3 | % -----------------------
4 |
5 | % -----------------
6 | % Typography tweaks
7 | % -----------------
8 | % Indent size
9 | \setlength{\parindent}{0.5in}
10 | \setlength{\leftmargin}{0.5in}
11 |
12 | % Fix widows and orphans
13 | \usepackage[all,defaultlines=2]{nowidow}
14 |
15 | % List things
16 | \usepackage{enumitem}
17 | % Same document-level indentation for ordered and ordered lists
18 | \setlist[1]{labelindent=\parindent}
19 | \setlist[itemize]{leftmargin=*}
20 | \setlist[enumerate]{leftmargin=*}
21 |
22 | % Wrap definition list terms
23 | % https://tex.stackexchange.com/a/9763/11851
24 | \setlist[description]{style=unboxed}
25 |
26 |
27 | % For better TOCs
28 | \usepackage{tocloft}
29 |
30 | % Remove left margin in lists inside longtables
31 | % https://tex.stackexchange.com/a/378190/11851
32 | \AtBeginEnvironment{longtable}{\setlist[itemize]{nosep, wide=0pt, leftmargin=*, before=\vspace*{-\baselineskip}, after=\vspace*{-\baselineskip}}}
33 |
34 | % For fancy ORCID links
35 | \usepackage{orcidlink}
36 |
37 | % Indent all first paragraphs because APA wants that
38 | \usepackage{indentfirst}
39 |
40 |
41 | % -----------------
42 | % Title block stuff
43 | % -----------------
44 |
45 | % Abstract
46 | \usepackage{abstract}
47 | \renewcommand{\abstractnamefont}{\normalfont\normalsize\bfseries}
48 | \renewcommand{\abstracttextfont}{\normalsize}
49 | \setlength{\absleftindent}{\parindent}
50 | \setlength{\absrightindent}{\parindent}
51 |
52 |
53 | % Keywords
54 | \providecommand{\keywords}[1]{\textbf{\textit{Keywords---}}#1}
55 |
56 | % Title
57 | \usepackage{titling}
58 | \setlength{\droptitle}{2\baselineskip}
59 | \pretitle{\begin{center}\normalfont\normalsize\bfseries}
60 | \posttitle{\par\end{center}\vspace{2\baselineskip}}
61 |
62 |
63 | % ------------------
64 | % Section headings
65 | % ------------------
66 | \usepackage{titlesec}
67 | \titleformat*{\section}{\center\normalsize\bfseries}
68 | \titleformat*{\subsection}{\normalsize\bfseries}
69 | \titleformat*{\subsubsection}{\normalsize\bfseries\itshape}
70 | \titleformat{\paragraph}[runin]{\bfseries}{\theparagraph.}{3pt}{\space}[.]
71 | \titleformat{\subparagraph}[runin]{\bfseries\itshape}{\thesubparagraph.}{3pt}{\space}[.]
72 |
73 | % \titlespacing{}{}{}{}
74 | % Starred version removes indentation in following paragraph
75 | \titlespacing*{\section}{0em}{2em}{0em}
76 | \titlespacing*{\subsection}{0em}{1em}{0em}
77 | \titlespacing*{\subsubsection}{0em}{0em}{0em}
78 | \titlespacing*{\paragraph}{\parindent}{1ex}{1em}
79 | \titlespacing*{\subparagraph}{\parindent}{1ex}{1em}
80 |
81 |
82 | % -----------
83 | % Footnotes
84 | % -----------
85 | % NB: footmisc has to come after biblatex because of conflicts
86 | \usepackage[bottom]{footmisc}
87 | \renewcommand*{\footnotelayout}{\footnotesize}
88 |
89 | \addtolength{\skip\footins}{12pt} % vertical space between rule and main text
90 | \setlength{\footnotesep}{16pt} % vertical space between footnotes
91 |
92 |
93 | % ----------
94 | % Captions
95 | % ----------
96 | \usepackage[font=normalsize]{caption}
97 |
98 |
99 | % --------
100 | % Macros
101 | % --------
102 | % pandoc will not convert text within \begin{} XXX \end{} to Markdown and will
103 | % treat it as regular TeX. Because of this, it's impossible to do stuff like
104 | % this:
105 |
106 | % \begin{landscape}
107 | %
108 | % | One | Two |
109 | % |-----+-------|
110 | % | my | table |
111 | % | is | nice |
112 | %
113 | % \end{landscape}
114 | %
115 | % Since it'll render like: | One | Two | |—–+——-| | my | table | | is | nice |
116 | %
117 | % BUT, from this http://stackoverflow.com/a/41945462/120898 we can get around
118 | % this by creating new commands for \begin and \end, like this:
119 | \newcommand{\blandscape}{\begin{landscape}}
120 | \newcommand{\elandscape}{\end{landscape}}
121 |
122 | % \blandscape
123 | %
124 | % | One | Two |
125 | % |-----+-------|
126 | % | my | table |
127 | % | is | nice |
128 | %
129 | % \elandscape
130 |
131 | % Same thing, but for generic groups
132 | % But can't use \bgroup and \egroup because those are built-in TeX things
133 | \newcommand{\stgroup}{\begingroup}
134 | \newcommand{\fingroup}{\endgroup}
135 |
136 |
137 | % ---------------------------
138 | % END CUSTOM PREAMBLE STUFF
139 | % ---------------------------
140 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah-manuscript/partials/before-body.tex:
--------------------------------------------------------------------------------
1 | % ---------------
2 | % TITLE SECTION
3 | % ---------------
4 |
5 | \begin{titlepage}
6 | \center
7 |
8 | % Don't include a newpage before \maketitle
9 | {\let\newpage\relax\maketitle}
10 |
11 | % Needs to come after \maketitle
12 | \thispagestyle{title}
13 |
14 | \vspace{0.25in}
15 |
16 | $if(word-count)$
17 | {\center Word count: $word-count$}
18 | $endif$
19 |
20 | \vspace{0.5in}
21 |
22 | \begin{center}
23 |
24 | \textbf{Author note}
25 |
26 | $for(by-author)$
27 | \raggedright\setlength{\parindent}{0.5in}$it.name.literal$$if(it.orcid)$,~\orcidlink{$it.orcid$}~\url{https://orcid.org/$it.orcid$}$endif$$if(it.metadata.title)$, $it.metadata.title$$if(it.affiliations)$, $for(it.affiliations)$$if(it.department)$$it.department$, $endif$$it.name$$sep$; $endfor$ $endif$$endif$
28 |
29 | $endfor$
30 |
31 | \end{center}
32 |
33 | $if(correspondence-prefix)$
34 | \begin{center}
35 |
36 | \textbf{Correspondence}
37 |
38 | $for(by-author)$
39 | $if(it.attributes.corresponding)$
40 | \par\raggedright\setlength{\parindent}{0.5in}$correspondence-prefix$~$it.name.literal$$if(it.email)$ (\href{mailto:$it.email$}{$it.email$})$endif$$if(it.affiliations)$, $for(it.affiliations)$$if(it.department)$$it.department$, $endif$$it.name$, $if(it.address)$$it.address$, $endif$$if(it.city)$$it.city$, $endif$$if(it.region)$$it.region$ $endif$$if(it.postal-code)$$it.postal-code$$endif$$if(it.country)$, $it.country$$endif$$sep$; $endfor$ $endif$
41 | $endif$
42 | $endfor$
43 |
44 | \end{center}
45 | $endif$
46 |
47 | $if(additional-info)$
48 | \begin{center}
49 |
50 | \textbf{Additional information}
51 |
52 | \par\raggedright\setlength{\parindent}{0.5in}$additional-info$
53 |
54 | \end{center}
55 | $endif$
56 |
57 | $if(thanks)$
58 | \begin{center}
59 |
60 | \textbf{Acknowledgments}
61 |
62 | \par\raggedright\setlength{\parindent}{0.5in}$thanks$
63 |
64 | \end{center}
65 | $endif$
66 |
67 | \vfill % Fill the rest of the page with whitespace
68 |
69 | \end{titlepage}
70 |
71 | \doublespacing
72 |
73 | $if(abstract)$
74 | \begin{abstract}
75 | \noindent $abstract$
76 | \end{abstract}
77 |
78 | \vspace{\baselineskip}
79 |
80 | $if(keywords)$\indent \keywords{%
81 | $for(keywords)$$keywords$$sep$, $endfor$%
82 | }$endif$
83 |
84 | \newpage
85 | $endif$
86 |
87 | \begin{center}
88 | \singlespacing
89 | \textbf{$title$$if(subtitle)$:\\$subtitle$$endif$}
90 | \end{center}
91 |
92 | $if(epigraph)$
93 | $for(epigraph)$
94 | $if(epigraph.source)$
95 | \epigraph{$epigraph.text$}{---$epigraph.source$}
96 | $else$
97 | \epigraph{$epigraph.text$}
98 | $endif$
99 | $endfor$
100 | $endif$
101 |
102 | % -------------------
103 | % END TITLE SECTION
104 | % -------------------
105 |
106 |
107 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah-manuscript/partials/title.tex:
--------------------------------------------------------------------------------
1 | % -----------------------
2 | % END-OF-PREAMBLE STUFF
3 | % -----------------------
4 |
5 | % For patching commands like \subtitle
6 | \usepackage{etoolbox}
7 |
8 |
9 | $if(left-aligned)$
10 | % -----------
11 | % Epigraphs
12 | % -----------
13 | \usepackage[document]{ragged2e}
14 | \setlength{\RaggedRightParindent}{\parindent}
15 | \setlength{\RaggedRightRightskip}{0pt plus 3em}
16 | $endif$
17 |
18 | $if(endnotes)$
19 | % ----------
20 | % Endnotes
21 | % ----------
22 | \usepackage{endnotes}
23 | \renewcommand{\enotesize}{\normalsize}
24 | \let\footnote=\endnote
25 | $endif$
26 |
27 | % -----------------
28 | % Running headers
29 | % -----------------
30 |
31 | \usepackage{fancyhdr}
32 | \setlength{\headheight}{0.25in}
33 | \renewcommand{\headrulewidth}{0pt} % Remove lines
34 | \renewcommand{\footrulewidth}{0pt}
35 |
36 | % SHORT TITLE Page #
37 | \fancypagestyle{normal}{
38 | \fancyhf{}
39 | \lhead{\uppercase{$if(short-title)$ $short-title$ $else$ $title$ $endif$}}
40 | \rhead{\thepage}
41 | }
42 |
43 | % Running head: SHORT TITLE Page #
44 | \fancypagestyle{title}{
45 | \fancyhf{}
46 | \lhead{Running head: \uppercase{$if(short-title)$ $short-title$ $else$ $title$ $endif$}}
47 | \rhead{}
48 | }
49 |
50 | % Use regular heading style
51 | \pagestyle{normal}
52 |
53 |
54 | $if(epigraph)$
55 | % -----------
56 | % Epigraphs
57 | % -----------
58 | \usepackage{epigraph}
59 | \renewcommand{\epigraphsize}{\footnotesize}
60 | \setlength{\epigraphrule}{0em}
61 | \setlength{\beforeepigraphskip}{0em}
62 | \setlength{\afterepigraphskip}{1em}
63 | $endif$
64 |
65 | $if(biblatex)$
66 | % ----------
67 | % BibLaTeX
68 | % ----------
69 | $if(biblatex-chicago)$
70 | \usepackage[$if(biblio-style)$$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex-chicago}
71 | $else$
72 | \usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
73 | $endif$
74 |
75 | \setlength\bibitemsep{0pt} % No space between bib entries
76 | \setlength\bibhang{\parindent} % Match document indentation
77 |
78 | % Fix biblatex's odd preference for using In: by default.
79 | \renewbibmacro{in:}{%
80 | \ifentrytype{article}{}{%
81 | \printtext{\bibstring{}\intitlepunct}}}
82 |
83 | \addbibresource{$bibliography$}
84 |
85 | % Start bibliography on new page
86 | \pretocmd{\printbibliography}{\clearpage}{}{}
87 | $endif$
88 |
89 | % ----------------------
90 | % Title block elements
91 | % ----------------------
92 | \usepackage{authblk}
93 | \renewcommand*{\Authsep}{, }
94 | \renewcommand*{\Authand}{ and }
95 | \renewcommand*{\Authands}{, and }
96 | \renewcommand*{\Affilfont}{\normalsize}
97 | \renewcommand*{\Authfont}{\normalsize}
98 |
99 | $if(title)$
100 | \title{$title$$if(subtitle)$:$endif$}
101 | $endif$
102 |
103 | $if(subtitle)$
104 | \makeatletter
105 | \providecommand{\subtitle}[1]{% add subtitle to \maketitle
106 | \apptocmd{\@title}{\par #1 \par}{}{}
107 | }
108 | \makeatother
109 | \subtitle{$subtitle$}
110 | $endif$
111 |
112 | $for(by-author)$
113 | \author[$for(it.affiliations)$$it.number$$sep$,$endfor$]{$by-author.name.literal$}
114 | $endfor$
115 |
116 | $for(by-affiliation)$
117 | \affil[$it.number$]{$it.name$}
118 | $endfor$
119 |
120 | \date{}
121 |
122 |
123 | % Typeset URLs in the same font as their parent environment
124 | %
125 | % This has to come at the end of the preamble, after any biblatex stuff because
126 | % some biblatex styles (like APA) define their own \urlstyle{}
127 | \usepackage{url}
128 | \urlstyle{same}
129 |
130 |
131 | % Make sure math environments are always single spaced and have a little space after
132 | \let\oldDisplayMath=\[
133 | \let\endoldDisplayMath=\]
134 | \renewcommand{\[}{\begin{singlespace}\oldDisplayMath}
135 | \renewcommand{\]}{\endoldDisplayMath\end{singlespace}\vspace{\baselineskip}}
136 |
137 | % ---------------------------
138 | % END END-OF-PREAMBLE STUFF
139 | % ---------------------------
140 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah-manuscript/styles/reference.docx:
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https://raw.githubusercontent.com/andrewheiss/testy-turtle/40e9540b65a5a8826966300711e8aafa3341971e/manuscript/_extensions/andrewheiss/hikmah-manuscript/styles/reference.docx
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/manuscript/_extensions/andrewheiss/hikmah-manuscript/styles/reference.odt:
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https://raw.githubusercontent.com/andrewheiss/testy-turtle/40e9540b65a5a8826966300711e8aafa3341971e/manuscript/_extensions/andrewheiss/hikmah-manuscript/styles/reference.odt
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/manuscript/_extensions/andrewheiss/hikmah-manuscript/templates/odt-manuscript.odt:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
11 | $automatic-styles$
12 |
13 | $for(header-includes)$
14 | $header-includes$
15 | $endfor$
16 |
17 |
18 |
19 | $if(title)$
20 | $title$
21 | $endif$
22 | $if(subtitle)$
23 | $subtitle$
24 | $endif$
25 |
26 | $for(author)$
27 | $author$
28 | $endfor$
29 |
30 | $if(date)$
31 | $date$
32 | $endif$
33 |
34 | Author note
35 | TODO: List of authors here; there's a bug(?) in pandoc/quarto where the full author object isn't available?
36 |
37 | $if(correspondence-prefix)$
38 | Correspondence
39 | TODO: Corresponding author details; again there's a bug that make it so we can't access other parts of the author object
40 | $endif$
41 |
42 | $if(additional-info)$
43 | Additional information
44 | $additional-info$
45 | $endif$
46 |
47 | $if(thanks)$
48 | Acknowledgments
49 | $thanks$
50 | $endif$
51 |
52 |
53 |
54 | $if(abstract)$
55 | Abstract
56 | $abstract$
57 | $endif$
58 |
59 | $if(keywords)$
60 | Keywords: $for(keywords)$$keywords$$sep$, $endfor$
61 | $endif$
62 |
63 |
64 |
65 | $if(title)$
66 | $title$
67 | $endif$
68 | $if(subtitle)$
69 | $subtitle$
70 | $endif$
71 |
72 | $if(epigraph)$
73 | $for(epigraph)$
74 | $if(epigraph.source)$
75 | $epigraph.text$
76 | —$epigraph.source$
77 |
78 | $else$
79 | $epigraph.text$
80 |
81 | $endif$
82 | $endfor$
83 | $endif$
84 |
85 | $for(include-before)$
86 | $include-before$
87 | $endfor$
88 | $body$
89 | $for(include-after)$
90 | $include-after$
91 | $endfor$
92 |
93 |
94 |
95 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah/_extension.yml:
--------------------------------------------------------------------------------
1 | title: Hikmah
2 | author: Andrew Heiss
3 | version: 0.0.3
4 | contributes:
5 | formats:
6 | common:
7 | date-format: full
8 | pdf:
9 | # Template pieces
10 | template-partials:
11 | - "partials/title.tex"
12 | - "partials/before-body.tex"
13 | include-in-header:
14 | - "include-in-header.tex"
15 |
16 | # Document styling
17 | geometry:
18 | - top=10pc # 10p0
19 | - bottom=10pc # 10p0
20 | - left=11pc # 11p0
21 | - right=11pc # 11p0
22 | - heightrounded
23 |
24 | # Citations and links
25 | colorlinks: true
26 | linkcolor: DarkSlateBlue
27 | urlcolor: DarkSlateBlue
28 | citecolor: DarkSlateBlue
29 | link-citations: true
30 |
31 | biblio-title: "References"
32 | biblio-config: false # Don't use the default template's biblatex commands
33 | cite-method: biblatex
34 | biblatex-chicago: false # Custom flag for enabling biblatex-chicago
35 | biblio-style: apa
36 | biblatexoptions:
37 | - backend=biber
38 |
39 | # The titlesec package provides its own mechanism for dealing with
40 | # inline/block headings, so we need to disable pandoc's support for it
41 | # (see https://stackoverflow.com/q/42916124/120898)
42 | block-headings: false
43 | # Indent paragraphs instead of adding space between them
44 | indent: true
45 | html:
46 | theme: styles/pretty.scss
47 | template-partials:
48 | - "partials/title-block.html"
49 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah/include-in-header.tex:
--------------------------------------------------------------------------------
1 | % -----------------------
2 | % CUSTOM PREAMBLE STUFF
3 | % -----------------------
4 |
5 | % -----------------
6 | % Typography tweaks
7 | % -----------------
8 | % Indent size
9 | \setlength{\parindent}{1pc} % 1p0
10 |
11 | % Fix widows and orphans
12 | \usepackage[all,defaultlines=2]{nowidow}
13 |
14 | % List things
15 | \usepackage{enumitem}
16 | % Same document-level indentation for ordered and ordered lists
17 | \setlist[1]{labelindent=\parindent}
18 | \setlist[itemize]{leftmargin=*}
19 | \setlist[enumerate]{leftmargin=*}
20 |
21 | % Wrap definition list terms
22 | % https://tex.stackexchange.com/a/9763/11851
23 | \setlist[description]{style=unboxed}
24 |
25 |
26 | % For better TOCs
27 | \usepackage{tocloft}
28 |
29 | % Remove left margin in lists inside longtables
30 | % https://tex.stackexchange.com/a/378190/11851
31 | \AtBeginEnvironment{longtable}{\setlist[itemize]{nosep, wide=0pt, leftmargin=*, before=\vspace*{-\baselineskip}, after=\vspace*{-\baselineskip}}}
32 |
33 |
34 | % -----------------
35 | % Title block stuff
36 | % -----------------
37 |
38 | % Abstract
39 | \usepackage[overload]{textcase}
40 | \usepackage[runin]{abstract}
41 | \renewcommand{\abstractnamefont}{\sffamily\footnotesize\bfseries\MakeUppercase}
42 | \renewcommand{\abstracttextfont}{\sffamily\small}
43 | \setlength{\absleftindent}{\parindent * 2}
44 | \setlength{\absrightindent}{\parindent * 2}
45 | \abslabeldelim{\quad}
46 | \setlength{\abstitleskip}{-\parindent}
47 |
48 |
49 | % Keywords
50 | \newenvironment{keywords}
51 | {\vskip -3em \hspace{\parindent}\small\sffamily{\sffamily\footnotesize\bfseries\MakeUppercase{Keywords}}\quad}
52 | {\vskip 3em}
53 |
54 |
55 | % Title
56 | \usepackage{titling}
57 | \setlength{\droptitle}{3em}
58 | \pretitle{\par\vskip 5em \begin{flushleft}\LARGE\sffamily\bfseries}
59 | \posttitle{\par\end{flushleft}\vskip 0.75em}
60 |
61 |
62 | % Authors
63 | %
64 | % PHEW this is complicated for a number of reasons!
65 | %
66 | % When using \and with multiple authors, the article class in LaTeX wraps each
67 | % author block in a tabluar environment with a hardcoded center alignment. It's
68 | % possible to use \preauthor{} to start tabulars with a left alignment {l}, but
69 | % that only applies to the first author because the others all use \and with the
70 | % hardcoded {c}. But we can override the \and command and add our own {l}
71 | %
72 | % (See https://github.com/rstudio/rmarkdown/issues/1716#issuecomment-560601691
73 | % for an example of redefining \and to just be \\)
74 | %
75 | % That's all great, except tabulars have some amount of default horizontal
76 | % padding, which makes left-aligned author blocks not actuall get fully
77 | % left-aligned on the page. We can set the horizontal padding for the column to
78 | % 0, but it requires some wonky syntax: {@{\hspace{0em}}l@{}}
79 | \renewcommand{\and}{\end{tabular} \hskip 3em \begin{tabular}[t]{@{\hspace{0em}}l@{}}}
80 | \preauthor{\begin{flushleft}
81 | \lineskip 1.5em
82 | \begin{tabular}[t]{@{\hspace{0em}}l@{}}}
83 | \postauthor{\end{tabular}\par\end{flushleft}}
84 |
85 | % Omit the date since the \published command does that
86 | \predate{}
87 | \postdate{}
88 |
89 | % Command for a note at the top of the first page describing the publication
90 | % status of the paper.
91 | \newcommand{\published}[1]{%
92 | \gdef\puB{#1}}
93 | \newcommand{\puB}{}
94 | \renewcommand{\maketitlehooka}{%
95 | \par\noindent\footnotesize\sffamily \puB}
96 |
97 |
98 | % ------------------
99 | % Section headings
100 | % ------------------
101 | \usepackage{titlesec}
102 | \titleformat*{\section}{\Large\sffamily\bfseries\raggedright}
103 | \titleformat*{\subsection}{\large\sffamily\bfseries\raggedright}
104 | \titleformat*{\subsubsection}{\normalsize\sffamily\bfseries\raggedright}
105 | \titleformat*{\paragraph}{\small\sffamily\bfseries\raggedright}
106 |
107 | % \titlespacing{}{}{}{}
108 | % Starred version removes indentation in following paragraph
109 | \titlespacing*{\section}{0em}{2em}{0.1em}
110 | \titlespacing*{\subsection}{0em}{1.25em}{0.1em}
111 | \titlespacing*{\subsubsection}{0em}{0.75em}{0em}
112 |
113 |
114 | % -----------
115 | % Footnotes
116 | % -----------
117 | % NB: footmisc has to come after biblatex because of conflicts
118 | \usepackage[bottom, flushmargin]{footmisc}
119 | \renewcommand*{\footnotelayout}{\footnotesize}
120 |
121 | \addtolength{\skip\footins}{10pt} % vertical space between rule and main text
122 | \setlength{\footnotesep}{5pt} % vertical space between footnotes
123 |
124 |
125 | % ----------
126 | % Captions
127 | % ----------
128 | \usepackage[font={small,sf}, labelfont={small,sf,bf}]{caption}
129 |
130 |
131 | % --------
132 | % Macros
133 | % --------
134 | % pandoc will not convert text within \begin{} XXX \end{} to Markdown and will
135 | % treat it as regular TeX. Because of this, it's impossible to do stuff like
136 | % this:
137 |
138 | % \begin{landscape}
139 | %
140 | % | One | Two |
141 | % |-----+-------|
142 | % | my | table |
143 | % | is | nice |
144 | %
145 | % \end{landscape}
146 | %
147 | % Since it'll render like: | One | Two | |—–+——-| | my | table | | is | nice |
148 | %
149 | % BUT, from this http://stackoverflow.com/a/41945462/120898 we can get around
150 | % this by creating new commands for \begin and \end, like this:
151 | \newcommand{\blandscape}{\begin{landscape}}
152 | \newcommand{\elandscape}{\end{landscape}}
153 |
154 | % \blandscape
155 | %
156 | % | One | Two |
157 | % |-----+-------|
158 | % | my | table |
159 | % | is | nice |
160 | %
161 | % \elandscape
162 |
163 | % Same thing, but for generic groups
164 | % But can't use \bgroup and \egroup because those are built-in TeX things
165 | \newcommand{\stgroup}{\begingroup}
166 | \newcommand{\fingroup}{\endgroup}
167 |
168 |
169 | % ---------------------------
170 | % END CUSTOM PREAMBLE STUFF
171 | % ---------------------------
172 |
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/manuscript/_extensions/andrewheiss/hikmah/partials/before-body.tex:
--------------------------------------------------------------------------------
1 | % ---------------
2 | % TITLE SECTION
3 | % ---------------
4 | $if(published)$
5 | $if(code-repo)$
6 | \published{\textbf{$date$} \qquad $published$ \\ {\scriptsize $code-repo$}}
7 | $else$
8 | \published{\textbf{$date$} \qquad {\scriptsize $published$}}
9 | $endif$
10 | $else$
11 | $if(code-repo)$
12 | \published{\textbf{$date$} \\ {\scriptsize $code-repo$}}
13 | $else$
14 | \published{\textbf{$date$}}
15 | $endif$
16 | $endif$
17 |
18 | $if(title)$
19 | \maketitle
20 | $endif$
21 |
22 | $if(abstract)$
23 | \begin{abstract}
24 | $abstract$
25 | \end{abstract}
26 | \vskip 3em
27 | $endif$
28 |
29 | $if(keywords)$
30 | \begin{keywords}
31 | \def\sep{;\ }
32 | $for(keywords/allbutlast)$$keywords$\sep $endfor$
33 | $for(keywords/last)$$keywords$$endfor$
34 | \end{keywords}
35 | $endif$
36 |
37 | $if(epigraph)$
38 | $for(epigraph)$
39 | $if(epigraph.source)$
40 | \epigraph{$epigraph.text$}{---$epigraph.source$}
41 | $else$
42 | \epigraph{$epigraph.text$}
43 | $endif$
44 | $endfor$
45 | $endif$
46 | % -------------------
47 | % END TITLE SECTION
48 | % -------------------
49 |
50 |
51 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah/partials/title-block.html:
--------------------------------------------------------------------------------
1 |
20 | $if(epigraph)$
21 |
22 |
23 | $for(epigraph)$
24 |
25 | $epigraph.text$
26 |
27 | $if(epigraph.source)$
28 |
31 | $endif$
32 | $endfor$
33 |
34 |
35 | $endif$
36 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah/partials/title.tex:
--------------------------------------------------------------------------------
1 | % -----------------------
2 | % END-OF-PREAMBLE STUFF
3 | % -----------------------
4 |
5 | $if(epigraph)$
6 | % -----------
7 | % Epigraphs
8 | % -----------
9 | \usepackage{epigraph}
10 | \renewcommand{\epigraphsize}{\sffamily\footnotesize}
11 | \setlength{\epigraphrule}{0em}
12 | \setlength{\beforeepigraphskip}{-2em}
13 | \setlength{\afterepigraphskip}{1em}
14 | $endif$
15 |
16 | $if(biblatex)$
17 | % ----------
18 | % BibLaTeX
19 | % ----------
20 | $if(biblatex-chicago)$
21 | \usepackage[$if(biblio-style)$$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex-chicago}
22 | $else$
23 | \usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
24 | $endif$
25 |
26 | \setlength\bibitemsep{0pt} % No space between bib entries
27 | \renewcommand*{\bibfont}{\footnotesize} % Use smaller font
28 | \setlength\bibhang{\parindent} % Match document indentation
29 |
30 | % Fix biblatex's odd preference for using In: by default.
31 | \renewbibmacro{in:}{%
32 | \ifentrytype{article}{}{%
33 | \printtext{\bibstring{}\intitlepunct}}}
34 |
35 | \addbibresource{$bibliography$}
36 | $endif$
37 |
38 | % ----------------------
39 | % Title block elements
40 | % ----------------------
41 | \usepackage{orcidlink} % Create automatic ORCID icons/links
42 |
43 | $if(title)$
44 | \title{$title$$if(thanks)$\thanks{$thanks$}$endif$}
45 | $endif$
46 |
47 | $if(subtitle)$
48 | \usepackage{etoolbox}
49 | \makeatletter
50 | \providecommand{\subtitle}[1]{% add subtitle to \maketitle
51 | \apptocmd{\@title}{\par {\vskip 0.25em \large #1 \par}}{}{}
52 | }
53 | \makeatother
54 | \subtitle{$subtitle$}
55 | $endif$
56 |
57 | \author{
58 | $for(by-author)$
59 | {\large $it.name.literal$$if(it.orcid)$~\orcidlink{$it.orcid$}$endif$}%
60 | $if(it.attributes.corresponding)$\thanks{Corresponding author.}$endif$ \\%
61 | $for(it.affiliations)$$it.name$ \\$endfor$%
62 | {\footnotesize \url{$it.email$}} \and
63 | $endfor$
64 | }
65 |
66 | \date{}
67 |
68 |
69 | % Typeset URLs in the same font as their parent environment
70 | %
71 | % This has to come at the end of the preamble, after any biblatex stuff because
72 | % some biblatex styles (like APA) define their own \urlstyle{}
73 | \usepackage{url}
74 | \urlstyle{same}
75 |
76 | % ---------------------------
77 | % END END-OF-PREAMBLE STUFF
78 | % ---------------------------
79 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/hikmah/styles/pretty.scss:
--------------------------------------------------------------------------------
1 | /*-- scss:defaults --*/
2 |
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/manuscript/_extensions/andrewheiss/wordcount/_extension.yml:
--------------------------------------------------------------------------------
1 | title: Quarto Word Count
2 | author: Andrew Heiss
3 | version: 1.1.2
4 | quarto-required: ">=1.3.0"
5 | contributes:
6 | format:
7 | common:
8 | filters:
9 | - at: pre-render
10 | path: "citeproc.lua"
11 | - at: pre-render
12 | path: "wordcount.lua"
13 | citeproc: false
14 | html: default
15 | pdf: default
16 | docx: default
17 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/wordcount/citeproc.lua:
--------------------------------------------------------------------------------
1 | -- Lua filter that behaves like `--citeproc`
2 | function Pandoc (doc)
3 | return pandoc.utils.citeproc(doc)
4 | end
5 |
--------------------------------------------------------------------------------
/manuscript/_extensions/andrewheiss/wordcount/wordcount.lua:
--------------------------------------------------------------------------------
1 | --[[
2 | Counts words in a document
3 |
4 | Images and tables are ignored; words in text body do not include referece section
5 |
6 | This filter is an adapted mixture of
7 | https://github.com/pandoc/lua-filters/blob/master/wordcount/wordcount.lua
8 | and
9 | https://github.com/pandoc/lua-filters/blob/master/section-refs/section-refs.lua
10 | ]]
11 |
12 | local body_words = 0
13 | local ref_words = 0
14 | local appendix_words = 0
15 |
16 | function is_table (blk)
17 | return (blk.t == "Table")
18 | end
19 |
20 | function is_image (blk)
21 | return (blk.t == "Image")
22 | end
23 |
24 | function remove_all_tables_images (blks)
25 | local out = {}
26 | for _, b in pairs(blks) do
27 | if not (is_table(b) or is_image(b)) then
28 | table.insert(out, b)
29 | end
30 | end
31 | return out
32 | end
33 |
34 | function is_ref_div (blk)
35 | return (blk.t == "Div" and blk.identifier == "refs")
36 | end
37 |
38 | function get_all_refs (blks)
39 | local out = {}
40 | for _, b in pairs(blks) do
41 | if is_ref_div(b) then
42 | table.insert(out, b)
43 | end
44 | end
45 | return out
46 | end
47 |
48 | function remove_all_refs (blks)
49 | local out = {}
50 | for _, b in pairs(blks) do
51 | if not (is_ref_div(b)) then
52 | table.insert(out, b)
53 | end
54 | end
55 | return out
56 | end
57 |
58 | -- Check if the block is an appendix div
59 | function is_appendix_div (blk)
60 | return (blk.t == "Div" and blk.identifier == "appendix-count")
61 | end
62 |
63 | -- Get all appendix divs
64 | function get_all_appendix (blks)
65 | local out = {}
66 | for _, b in pairs(blks) do
67 | if is_appendix_div(b) then
68 | table.insert(out, b)
69 | end
70 | end
71 | return out
72 | end
73 |
74 | -- Remove all appendix divs
75 | function remove_all_appendix (blks)
76 | local out = {}
77 | for _, b in pairs(blks) do
78 | if not is_appendix_div(b) then
79 | table.insert(out, b)
80 | end
81 | end
82 | return out
83 | end
84 |
85 | body_count = {
86 | Str = function(el)
87 | -- we don't count a word if it's entirely punctuation:
88 | if el.text:match("%P") then
89 | body_words = body_words + 1
90 | end
91 | end,
92 |
93 | Code = function(el)
94 | _,n = el.text:gsub("%S+","")
95 | body_words = body_words + n
96 | end,
97 |
98 | CodeBlock = function(el)
99 | _,n = el.text:gsub("%S+","")
100 | body_words = body_words + n
101 | end
102 | }
103 |
104 | ref_count = {
105 | Str = function(el)
106 | -- we don't count a word if it's entirely punctuation:
107 | if el.text:match("%P") then
108 | ref_words = ref_words + 1
109 | end
110 | end
111 | }
112 |
113 | -- Count words in the appendix
114 | appendix_count = {
115 | Str = function(el)
116 | -- we don't count a word if it's entirely punctuation:
117 | if el.text:match("%P") then
118 | appendix_words = appendix_words + 1
119 | end
120 | end
121 | }
122 |
123 | function Pandoc(el)
124 | if PANDOC_VERSION == nil then -- if pandoc_version < 2.1
125 | io.stderr:write("WARNING: pandoc >= 2.1 required for wordcount filter\n")
126 | return el
127 | end
128 |
129 | local untabled = remove_all_tables_images(el.blocks)
130 |
131 | refs_title = el.meta["reference-section-title"]
132 | local unreffed = remove_all_refs(untabled)
133 |
134 | -- Remove appendix divs from the blocks
135 | local unappended = remove_all_appendix(unreffed)
136 | -- Walk through the unappended blocks and count the words
137 | pandoc.walk_block(pandoc.Div(unappended), body_count)
138 |
139 | local body_words_out = body_words .. " words in text body"
140 |
141 | local refs = get_all_refs(untabled)
142 | pandoc.walk_block(pandoc.Div(refs), ref_count)
143 | local ref_words_out = ref_words .. " words in reference section"
144 |
145 | -- Get all appendix divs
146 | local appendix = get_all_appendix(unreffed)
147 | -- Walk through the appendix divs and count the words
148 | pandoc.walk_block(pandoc.Div(appendix), appendix_count)
149 | -- Print out the count of words in the appendix
150 | local appendix_words_out = appendix_words .. " words in appendix section"
151 |
152 | local total_words_out = ""
153 | if appendix_words > 0 then
154 | total_words_out = body_words + ref_words .. " in the main text + references, with " .. appendix_words .. " in the appendix"
155 | else
156 | total_words_out = body_words + ref_words + appendix_words .. " total words"
157 | end
158 |
159 | local longest_out = math.max(string.len(body_words_out),
160 | string.len(ref_words_out),
161 | string.len(total_words_out))
162 |
163 | print(total_words_out)
164 | print(string.rep("-", longest_out))
165 | print(body_words_out)
166 | print(ref_words_out)
167 |
168 | if appendix_words > 0 then
169 | print(appendix_words_out)
170 | end
171 |
172 | print()
173 |
174 | return el
175 | end
176 |
--------------------------------------------------------------------------------
/manuscript/_output.yaml:
--------------------------------------------------------------------------------
1 | knit: stop('\n\nDon\'t knit with the "Knit" button in RStudio.\nRun one of these commands in an R console:\n\ntargets::tar_make(html)\ntargets::tar_make(pdf)\ntargets::tar_make(ms_pdf)\ntargets::tar_make(docx)\n\nYou can also run targets::tar_make() to build the whole project.\n\n')
2 |
--------------------------------------------------------------------------------
/manuscript/_quarto-ms.yml:
--------------------------------------------------------------------------------
1 | project:
2 | output-dir: output-ms
3 | render:
4 | - manuscript.qmd
5 |
6 | format:
7 | # Manuscript-y PDF output
8 | hikmah-manuscript-pdf:
9 | cite-method: citeproc
10 | output-file: "manuscript-ms.pdf"
11 | # Custom fonts
12 | mainfont: "Linux Libertine O"
13 | mainfontoptions:
14 | - "Numbers=Proportional"
15 | - "Numbers=OldStyle"
16 | mathfont: "Libertinus Math"
17 |
18 | include-in-header:
19 | # The \everydisplay thing makes all math blocks use \small font
20 | text: |
21 | \usepackage{mathtools}
22 | \everydisplay\expandafter{\the\everydisplay\small }
23 |
24 | \usepackage{xeCJK}
25 | \setCJKmainfont{Noto Serif SC}
26 |
27 | % Add a little bit of extra space above minipages
28 | % for gt table footnotes
29 | \usepackage{etoolbox}
30 | \AtBeginEnvironment{minipage}{\vspace{\baselineskip}}
31 |
32 | knitr:
33 | opts_chunk:
34 | dev: "cairo_pdf"
35 |
36 |
37 | # Manuscript-y Word output
38 | hikmah-manuscript-odt:
39 | output-file: "manuscript-ms.odt"
40 | prefer-html: true
41 |
42 | knitr:
43 | opts_chunk:
44 | dev: "ragg_png"
45 | dpi: 300
46 |
--------------------------------------------------------------------------------
/manuscript/_quarto-nice.yml:
--------------------------------------------------------------------------------
1 | project:
2 | output-dir: output
3 | render:
4 | - manuscript.qmd
5 |
6 | format:
7 | # Nice HTML output
8 | html:
9 | toc: true
10 | include-in-header:
11 | - text: |
12 |
17 | language:
18 | title-block-published: "Latest version"
19 | shift-heading-level-by: 1
20 | theme:
21 | - zephyr
22 | - html/custom.scss
23 | citeproc: false
24 | filters:
25 | - at: pre-render
26 | path: "_extensions/andrewheiss/wordcount/citeproc.lua"
27 | - at: pre-render
28 | path: "_extensions/andrewheiss/wordcount/wordcount.lua"
29 | lightbox: auto
30 | knitr:
31 | opts_chunk:
32 | dev: "ragg_png"
33 | dpi: 300
34 |
35 |
36 | # Nice PDF output
37 | hikmah-pdf:
38 | cite-method: citeproc
39 |
40 | # Custom fonts
41 | mainfont: "Linux Libertine O"
42 | mainfontoptions:
43 | - "Numbers=Proportional"
44 | - "Numbers=OldStyle"
45 | sansfont: "IBM Plex Sans"
46 | mathfont: "Libertinus Math"
47 | # linestretch: 1.05
48 |
49 | include-in-header:
50 | # The \everydisplay thing makes all math blocks use \small font
51 | text: |
52 | \usepackage{mathtools}
53 | \everydisplay\expandafter{\the\everydisplay\small}
54 |
55 | % Add a little bit of extra space above minipages
56 | % for gt table footnotes
57 | \usepackage{etoolbox}
58 | \AtBeginEnvironment{minipage}{\vspace{\baselineskip}}
59 |
60 |
61 | knitr:
62 | opts_chunk:
63 | dev: "cairo_pdf"
64 |
--------------------------------------------------------------------------------
/manuscript/_quarto.yml:
--------------------------------------------------------------------------------
1 | project:
2 | title: "Manuscript"
3 |
4 | csl: csl/chicago-author-date.csl
5 |
6 | profile:
7 | default: nice
8 |
--------------------------------------------------------------------------------
/manuscript/manuscript.Rmd:
--------------------------------------------------------------------------------
1 | ---
2 | title: "Are Donors Really Responding? Analyzing the Impact of Global Restrictions on NGOs"
3 | short-title: "Are Donors Really Responding?"
4 | author:
5 | - name: Suparna Chaudhry
6 | affiliation: Lewis & Clark College
7 | email: schaudhry@lclark.edu
8 | url: http://www.suparnachaudhry.com/
9 | - name: Andrew Heiss
10 | affiliation: Georgia State University
11 | email: aheiss@gsu.edu
12 | url: https://www.andrewheiss.com/
13 | date: "July 5, 2022"
14 | published: "Revising"
15 | code-repo: "Access the code and full analysis notebook at "
16 | abstract: >-
17 | Foreign donors routinely use nongovernmental organizations (NGOs) to deliver aid abroad. However, recent decades have witnessed a global cascade of restrictive anti-NGO legislation. How have foreign aid donors responded and adapted to this legal crackdown on NGOs? Using original data from all countries that received aid from 1981–2012, we assess the impact of anti-NGO laws on total flows of official foreign aid, the nature of projects funded, and the channels used for distributing this aid. Overall, we find that donors scale back their operations in repressive countries. However, rather than completely withdraw, we also find that donors redirect funds within restrictive countries by decreasing funds for politically sensitive issues in favor of regime-compatible causes. Donors also channel more aid through domestic rather than foreign NGOs; however, this change is by no means a perfect substitute. We conclude by discussing the implications of our findings for official aid donors, INGOs, and local groups working on contentious causes such as elections, human rights, media, corruption, and advocacy.
18 | keywords: NGOs, civil society, foreign aid, anti-NGO laws
19 | word-count: ""
20 | thanks: >-
21 | We thank Elizabeth Bloodgood, Sarah Bush, Magnus Lundgren, Christopher Pallas, the participants of the "Beyond the Boomerang" workshop held before the 2017 annual International Studies Association conference, and the participants of the 2017 Midwest Political Science Association conference for their helpful comments. We also acknowledge Lisa Argyle, Paul Bürkner, Ryan Davis, Adam Dynes, Isabella Ghement, Andrew Green, John Holbein, Tristan Mahr, Judith Kelley, Robbie Richards, and Simon Weschle for their invaluable help and advice.
22 | reference-section-title: References
23 | bibliography: bibliography.bib
24 | toc: false
25 | title-page: true
26 | endnotes: true
27 | endfloat: false
28 | mainfont: Cochineal
29 | sansfont: Inter
30 | author-note: >-
31 | Suparna Chaudhry, PhD, Assistant Professor of International Affairs, Department of International Affairs, Lewis \& Clark College; Andrew Heiss, PhD, Assistant Professor of Public Management, Andrew Young School of Policy Studies, Georgia State University.
32 | correspondence: >-
33 | Correspondence concerning this article should be addressed to Andrew Heiss, PhD, Department of Public Management and Policy, Andrew Young School of Policy Studies, Georgia State University, 14 Marietta Street NW, Suite 357, Atlanta, GA 30303. Contact: aheiss@gsu.edu
34 | editor_options:
35 | chunk_output_type: console
36 | ---
37 |
38 | Stuff here.
39 |
--------------------------------------------------------------------------------
/notebook/_metadata.yml:
--------------------------------------------------------------------------------
1 | format:
2 | html:
3 | shift-heading-level-by: 1
4 | fig-format: retina
5 | fig-width: 7
6 | fig-height: 4.5
7 | knitr:
8 | opts_chunk:
9 | collapse: true
10 | dev: "ragg_png"
11 | dpi: 300
12 | fig.align: center
13 |
--------------------------------------------------------------------------------
/notebook/design-details.qmd:
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1 | ---
2 | title: "Fonts, colors, and other design details"
3 | author: "Suparna Chaudhry and Andrew Heiss"
4 | date: 2022-12-01
5 | date-modified: "`r format(Sys.time(), '%F')`"
6 | resources:
7 | - "html/linux-libertine-woff/*"
8 | format:
9 | html:
10 | toc-depth: 4
11 | ---
12 |
13 | ```{r load-libraries, warning=FALSE, message=FALSE}
14 | library(tidyverse)
15 | library(targets)
16 | library(scales)
17 |
18 | tar_config_set(store = here::here('_targets'),
19 | script = here::here('_targets.R'))
20 |
21 | # Load graphics functions from targets
22 | invisible(list2env(tar_read(graphic_functions), .GlobalEnv))
23 |
24 | show_nice_pal <- function(pal, nrow = 1, show_text = TRUE) {
25 | out <- tibble(x = 1:length(pal),
26 | color = pal) %>%
27 | mutate(x_nice = glue::glue("[{x}]")) %>%
28 | mutate(across(c(color, x_nice), ~fct_inorder(.))) %>%
29 | ggplot(aes(x = color, y = 1, fill = color)) +
30 | geom_tile() +
31 | scale_x_discrete(expand = c(0, 0)) +
32 | scale_fill_identity() +
33 | facet_wrap(vars(x_nice), scales = "free_x", nrow = nrow) +
34 | theme_void(base_family = "Inconsolata") +
35 | theme(panel.spacing.x = unit(-1, units = "pt"),
36 | panel.spacing.y = unit(-0.5, units = "lines"),
37 | strip.text = element_blank())
38 |
39 | if (show_text) {
40 | out <- out +
41 | theme(axis.text.x = element_text(margin = margin(b = 5)),
42 | strip.text = element_text(size = rel(1.1), margin = margin(t = 5)),
43 | panel.spacing.y = unit(0, units = "lines"))
44 | }
45 |
46 | return(out)
47 | }
48 | ```
49 |
50 | # Fonts
51 |
52 | ```{scss echo=FALSE}
53 | @import url('https://fonts.googleapis.com/css2?family=Inter&display=swap');
54 |
55 | @font-face {
56 | font-family: 'Linux Libertine O';
57 | font-style: normal;
58 | font-weight: normal;
59 | src: local('Linux Libertine O Regular'), url('/notebook/html/linux-libertine-woff/LinLibertine_R.woff') format('woff');
60 | }
61 |
62 | @font-face {
63 | font-family: 'Linux Libertine O';
64 | font-style: italic;
65 | font-weight: normal;
66 | src: local('Linux Libertine O Italic'), url('/notebook/html/linux-libertine-woff/LinLibertine_RI.woff') format('woff');
67 | }
68 |
69 | @font-face {
70 | font-family: 'Linux Libertine O';
71 | font-style: normal;
72 | font-weight: bold;
73 | src: local('Linux Libertine O Bold'), url('/notebook/html/linux-libertine-woff/LinLibertine_RB.woff') format('woff');
74 | }
75 |
76 | @font-face {
77 | font-family: 'Linux Libertine O Bold';
78 | font-style: italic;
79 | font-weight: bold;
80 | src: local('Linux Libertine O Bold Italic'), url('LinLibertine_RBI.woff') format('woff');
81 | }
82 |
83 | .font-example {
84 | background: #ffffff;
85 | padding: 1.5em 1.5em 0.75em 1.5em;
86 | margin-bottom: 1rem;
87 | border-left: 10px solid #68abb8;
88 | border-top: 1px solid #68abb8;
89 | border-right: 1px solid #68abb8;
90 | border-bottom: 1px solid #68abb8;
91 | font-size: 1.1em;
92 | }
93 |
94 | .inter {
95 | font-family: "Inter";
96 | }
97 |
98 | .libertine {
99 | font-family: "Linux Libertine O Regular";
100 | font-size: 1.2em;
101 | }
102 | ```
103 |
104 | We use [Inter](https://rsms.me/inter/) (accessible for free from [Google Fonts](https://fonts.google.com/specimen/Inter)) as the main font in all our plots.
105 |
106 | ::: {.font-example .inter}
107 | **Inter**
108 |
109 | Whereas recognition of the *inherent dignity* and of the ***equal and inalienable*** rights of all members of the human family is the foundation of freedom, justice and peace in the world…
110 | :::
111 |
112 | In the fancy preprint version of our manuscript we use [Linux Libertine](https://en.wikipedia.org/wiki/Linux_Libertine) for the main body font, since it fits with [Libertinus Math](https://github.com/alerque/libertinus) for fancier math typesetting.
113 |
114 | ::: {.font-example .libertine}
115 | **Linux Libertine**
116 |
117 | Whereas recognition of the *inherent dignity* and of the ***equal and inalienable*** rights of all members of the human family is the foundation of freedom, justice and peace in the world…
118 | :::
119 |
120 | # Colors
121 |
122 | ## Prism (`clrs$Prism`)
123 |
124 | ```{r show-prism-short, fig.width=8, fig.height=0.2}
125 | #| out-width: 100%
126 | #| echo: false
127 | clrs$Prism %>% show_nice_pal(show_text = FALSE, nrow = 1)
128 | ```
129 |
130 | Our main palette is the [qualitative Prism palette from CARTOColors](https://carto.com/carto-colors/). CARTOColors palettes were designed for data-focused map visualizations,but can be used in any kind of visualization, similar to [ColorBrewer](http://colorbrewer2.org/).
131 |
132 | Access the palette using `clrs$Prism`, and access specific colors with indexes like `clrs$Prism[8]`:
133 |
134 | ```{r show-prism, fig.width=8, fig.height=2}
135 | #| out-width: 100%
136 | #| echo: false
137 | clrs$Prism %>% show_nice_pal(show_text = TRUE, nrow = 2)
138 | ```
139 |
140 | ```{r hex-prism}
141 | #| code-fold: show
142 | clrs$Prism %>% set_names(1:length(.))
143 | ```
144 |
145 | \
146 |
147 | ## Single-ish-color sequential palettes
148 |
149 | In some cases, like with plots that use `geom_lineribbon()`, we use a range of sequential colors. For these, we use several different [sequential palettes from CARTOColors](https://carto.com/carto-colors/) since they tend to match the color scheme from `clrs$prism`.
150 |
151 | ### Emerald (`clrs$Emrld`)
152 |
153 | ```{r show-emrld, fig.width=8, fig.height=1}
154 | #| out-width: 100%
155 | #| echo: false
156 | clrs$Emrld %>% show_nice_pal(show_text = TRUE)
157 | ```
158 |
159 | ```{r hex-emrld}
160 | #| code-fold: show
161 | clrs$Emrld %>% set_names(1:length(.))
162 | ```
163 |
164 | \
165 |
166 | ### Purple orange (`clrs$PurpOr`)
167 |
168 | ```{r show-purpor, fig.width=8, fig.height=1}
169 | #| out-width: 100%
170 | #| echo: false
171 | clrs$PurpOr %>% show_nice_pal(show_text = TRUE)
172 | ```
173 |
174 | ```{r hex-purpor}
175 | #| code-fold: show
176 | clrs$PurpOr %>% set_names(1:length(.))
177 | ```
178 |
179 | \
180 |
181 | ### Teal (`clrs$Teal`)
182 |
183 | ```{r show-teal, fig.width=8, fig.height=1}
184 | #| out-width: 100%
185 | #| echo: false
186 | clrs$Teal %>% show_nice_pal(show_text = TRUE)
187 | ```
188 |
189 | ```{r hex-teal}
190 | #| code-fold: show
191 | clrs$Teal %>% set_names(1:length(.))
192 | ```
193 |
194 | \
195 |
196 | ### Peach (`clrs$Peach`)
197 |
198 | ```{r show-peach, fig.width=8, fig.height=1}
199 | #| out-width: 100%
200 | #| echo: false
201 | clrs$Peach %>% show_nice_pal(show_text = TRUE)
202 | ```
203 |
204 | ```{r hex-peach}
205 | #| code-fold: show
206 | clrs$Peach %>% set_names(1:length(.))
207 | ```
208 |
209 | \
210 |
211 | ### Sunset (`clrs$Sunset`)
212 |
213 | ```{r show-sunset, fig.width=8, fig.height=1}
214 | #| out-width: 100%
215 | #| echo: false
216 | clrs$Sunset %>% show_nice_pal(show_text = TRUE)
217 | ```
218 |
219 | ```{r hex-sunset}
220 | #| code-fold: show
221 | clrs$Sunset %>% set_names(1:length(.))
222 | ```
223 |
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/notebook/html/custom.scss:
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1 | /*-- scss:defaults --*/
2 | $primary: #CC503E;
3 |
4 |
5 | /*-- scss:rules --*/
6 |
7 | // Font adjustments
8 | pre.sourceCode {
9 | font-size: 0.8em;
10 | }
11 |
12 | .dt-small {
13 | font-size: 70%;
14 | }
15 |
16 | thead th {
17 | text-transform: none;
18 | font-weight: bold;
19 | }
20 |
21 | // TOC and sidebar stuff
22 | #TOC {
23 | background-color: $light;
24 | }
25 |
26 | #TOC #toc-title {
27 | font-weight: bold;
28 | }
29 |
30 | #TOC .toc-actions p {
31 | font-size: 0.7em;
32 | line-height: 1.4;
33 | }
34 |
35 | .sidebar nav[role="doc-toc"] .toc-actions > div:first-of-type {
36 | margin-top: -7px;
37 | }
38 |
39 | .sidebar.margin-sidebar > * {
40 | padding: 0.5em 0 0.5em 0.5em;
41 | }
42 |
43 | .sidebar-navigation .sidebar-item-container {
44 | //font-size:1.1rem;
45 | font-weight: bold;
46 | padding-bottom: 0.4rem;
47 | font-size: 1rem;
48 | }
49 |
50 | .sidebar-navigation .sidebar-section .sidebar-item-container {
51 | font-weight: normal;
52 | padding-bottom: 0.4rem;
53 | font-size: 1rem;
54 | }
55 |
56 | .sidebar-navigation .sidebar-section .sidebar-item,
57 | .sidebar-navigation .sidebar-item{
58 | line-height: 1.2;
59 | }
60 |
61 | div.sidebar-item-container .active {
62 | color: $primary;
63 | }
64 |
65 | // Footer stuff
66 | .nav-footer-left {
67 | text-align: left;
68 | }
69 |
70 | .nav-footer-right {
71 | text-align: right;
72 | }
73 |
74 |
75 | // kableExtra or modelsummary or Quarto or *something* injects `border-bottom: 0`
76 | // into the inline for modelsummary tables when there are notes
77 | // with multiple lines (most esoteric bug ever!). This nukes the light grey bottom
78 | // border color that Bootstrap uses, which makes the tables ugly. So this class
79 | // forces the light grey border back on.
80 | .light-border {
81 | border-bottom-color: var(--bs-gray-300) !important;
82 | }
83 |
84 | // Make images in kableExtra tables take up the full width of their parent containers
85 | .table img {
86 | width: 100%;
87 | height: 100%;
88 | }
89 |
90 | .table tfoot {
91 | font-size: 0.85em;
92 | }
93 |
94 | .table tfoot td {
95 | padding-top: 0.3em !important;
96 | }
97 |
98 | .table tfoot tr:first-child td {
99 | padding-top: 1em !important;
100 | }
101 |
102 | .table tfoot tr:last-child td {
103 | padding-bottom: 1em !important;
104 | }
105 |
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1 |
2 |
3 |
4 |
5 |
7 |
8 |
9 |
10 |
11 | Generated from: http://www.cufonfonts.com
12 | AaBbCcDdEeFfGgHhŞşIıİi Example
13 | AaBbCcDdEeFfGgHhŞşIıİi Example
14 | AaBbCcDdEeFfGgHhŞşIıİi Example
15 | AaBbCcDdEeFfGgHhŞşIıİi Example
16 | AaBbCcDdEeFfGgHhŞşIıİi Example
17 | AaBbCcDdEeFfGgHhŞşIıİi Example
18 | AaBbCcDdEeFfGgHhŞşIıİi Example
19 | AaBbCcDdEeFfGgHhŞşIıİi Example
20 | AaBbCcDdEeFfGgHhŞşIıİi Example
21 |
22 |
23 |
24 |
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1 | /* #### Generated By: http://www.cufonfonts.com #### */
2 |
3 | @font-face {
4 | font-family: 'Linux Libertine O Regular';
5 | font-style: normal;
6 | font-weight: normal;
7 | src: local('Linux Libertine O Regular'), url('LinLibertine_R.woff') format('woff');
8 | }
9 |
10 |
11 | @font-face {
12 | font-family: 'Linux Libertine O Italic';
13 | font-style: normal;
14 | font-weight: normal;
15 | src: local('Linux Libertine O Italic'), url('LinLibertine_RI.woff') format('woff');
16 | }
17 |
18 |
19 | @font-face {
20 | font-family: 'Linux Libertine O Semibold';
21 | font-style: normal;
22 | font-weight: normal;
23 | src: local('Linux Libertine O Semibold'), url('LinLibertine_RZ.woff') format('woff');
24 | }
25 |
26 |
27 | @font-face {
28 | font-family: 'Linux Libertine O Semibold Italic';
29 | font-style: normal;
30 | font-weight: normal;
31 | src: local('Linux Libertine O Semibold Italic'), url('LinLibertine_RZI.woff') format('woff');
32 | }
33 |
34 |
35 | @font-face {
36 | font-family: 'Linux Libertine O Bold';
37 | font-style: normal;
38 | font-weight: normal;
39 | src: local('Linux Libertine O Bold'), url('LinLibertine_RB.woff') format('woff');
40 | }
41 |
42 |
43 | @font-face {
44 | font-family: 'Linux Libertine O Bold Italic';
45 | font-style: normal;
46 | font-weight: normal;
47 | src: local('Linux Libertine O Bold Italic'), url('LinLibertine_RBI.woff') format('woff');
48 | }
49 |
50 |
51 | @font-face {
52 | font-family: 'Linux Libertine Display O Regular';
53 | font-style: normal;
54 | font-weight: normal;
55 | src: local('Linux Libertine Display O Regular'), url('LinLibertine_DR.woff') format('woff');
56 | }
57 |
58 |
59 | @font-face {
60 | font-family: 'Linux Libertine Initials O Initials';
61 | font-style: normal;
62 | font-weight: normal;
63 | src: local('Linux Libertine Initials O Initials'), url('LinLibertine_I.woff') format('woff');
64 | }
65 |
66 |
67 | @font-face {
68 | font-family: 'Linux Libertine Mono O Mono';
69 | font-style: normal;
70 | font-weight: normal;
71 | src: local('Linux Libertine Mono O Mono'), url('LinLibertine_M.woff') format('woff');
72 | }
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/notebook/manuscript.qmd:
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1 | ---
2 | title: "Manuscript"
3 | ---
4 |
5 | Here's a link to the paper: [paper](/manuscript/manuscript.pdf)
6 |
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/notebook/software-citations.qmd:
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1 | ---
2 | title: Software citations
3 | nocite: "`r paste0('@', targets::tar_read(softbib_keys), collapse = ', ')`"
4 | bibliography: softbib.bib
5 | ---
6 |
7 | ```{r link-to-targets, include=FALSE}
8 | library(targets)
9 |
10 | tar_config_set(store = here::here('_targets'),
11 | script = here::here('_targets.R'))
12 |
13 | # We don't do anything here really---this is just to build a {targets} dependency to this file
14 | keys <- targets::tar_read(softbib_bib)
15 | ```
16 |
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1 | ---
2 | title: "Targets workflow"
3 | format:
4 | html:
5 | code-fold: true
6 | ---
7 |
8 | ```{r setup, include=FALSE}
9 | knitr::opts_chunk$set(fig.align = "center", fig.retina = 3,
10 | fig.width = 6, fig.height = (6 * 0.618),
11 | out.width = "85%", collapse = TRUE,
12 | dev = "png", dev.args = list(type = "cairo"))
13 |
14 | options(digits = 3, width = 120,
15 | dplyr.summarise.inform = FALSE,
16 | knitr.kable.NA = "")
17 |
18 | targets::tar_config_set(store = here::here('_targets'),
19 | script = here::here('_targets.R'))
20 | ```
21 |
22 | # targets pipeline
23 |
24 | We use [the magical **targets** package](https://docs.ropensci.org/targets/) to run our analysis and keep track of all dependencies automatically.
25 |
26 | To build our entire project, run `targets::tar_make()` at the R console.
27 |
28 | Here's our complete pipeline:
29 |
30 | ```{r show-targets-pipeline, echo=TRUE}
31 | library(targets)
32 |
33 | tar_glimpse()
34 | ```
35 |
36 |
37 | # Actual code
38 |
39 | ```{r generate-code-chunks, echo=FALSE}
40 | # MAGIC: https://gist.github.com/StevenMMortimer/e54ec050d97d79996189
41 | generate_chunk <- function(filename) {
42 | paste0(c(paste0("#### `R/", filename, "`"),
43 | paste0('```{r, code=xfun::read_utf8(here::here("R", "', filename, '")), eval=FALSE}'),
44 | "#| code-fold: true",
45 | "```", "", ""),
46 | sep = "\n")
47 | }
48 |
49 | out <- NULL
50 | for (thing in list.files(here::here("R"))) {
51 | out <- c(out, generate_chunk(thing))
52 | }
53 | ```
54 |
55 | `r paste(knitr::knit(text = out), collapse = "\n")`
56 |
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/notebook/why-hierarchical-models.qmd:
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1 | ---
2 | title: "Why hierarchical models?"
3 | ---
4 |
5 | ```{r setup, include=FALSE}
6 | # tikz stuff
7 | # Necessary for using dvisvgm on macOS
8 | # See https://www.andrewheiss.com/blog/2021/08/27/tikz-knitr-html-svg-fun/
9 | Sys.setenv(LIBGS = "/usr/local/share/ghostscript/9.53.3/lib/libgs.dylib.9.53")
10 | ```
11 |
12 | ```{r libraries-data, warning=FALSE, message=FALSE}
13 | library(tidyverse)
14 | library(targets)
15 | library(scales)
16 | library(patchwork)
17 |
18 | tar_config_set(store = here::here('_targets'),
19 | script = here::here('_targets.R'))
20 |
21 | font_opts <- list(extra.preamble = c("\\usepackage{libertine}",
22 | "\\usepackage{libertinust1math}"),
23 | dvisvgm.opts = "--font-format=woff")
24 |
25 | # Load data
26 | # Plotting functions
27 | invisible(list2env(tar_read(graphic_functions), .GlobalEnv))
28 | invisible(list2env(tar_read(misc_funs), .GlobalEnv))
29 |
30 | df_country_aid <- tar_read(country_aid_final)
31 | df_country_aid_laws <- filter(df_country_aid, laws)
32 | ```
33 |
34 |
35 | # Hierarchical structure
36 |
37 | ```{r data-summary, include=FALSE}
38 | details <- df_country_aid_laws %>%
39 | distinct(year) %>%
40 | summarize(num_years = n(),
41 | year_first = min(year),
42 | year_last = max(year)) %>%
43 | bind_cols(tibble(num_countries = df_country_aid_laws %>%
44 | distinct(gwcode) %>% nrow())) %>%
45 | as.list()
46 | ```
47 |
48 | Our data includes information about `r details$num_countries` countries across `r details$num_years` years (from `r details$year_first`–`r details$year_last`). This kind of time series cross-sectional (TSCS) data reflects a natural hierarchical structure, with repeated yearly observations nested within countries ([see this whole guide I wrote](https://www.andrewheiss.com/blog/2021/12/01/multilevel-models-panel-data-guide/) because of this exact project)
49 |
50 | ```{tikz panel-structure-svg, engine.opts=font_opts}
51 | #| echo: false
52 | #| fig-cap: "Multilevel panel data structure, with yearly observations of $y$ nested in countries"
53 | #| fig-align: center
54 | #| fig-ext: svg
55 | #| out-width: 100%
56 | \usetikzlibrary{positioning}
57 | \usetikzlibrary{shapes.geometric}
58 | \definecolor{red}{HTML}{CC503E}
59 | \definecolor{teal1}{HTML}{2a5674}
60 | \definecolor{teal2}{HTML}{68abb8}
61 | \definecolor{teal3}{HTML}{85c4c9}
62 | \definecolor{teal4}{HTML}{a8dbd9}
63 | \definecolor{peach1}{HTML}{f59e72}
64 | \definecolor{peach2}{HTML}{f8b58b}
65 | \definecolor{peach3}{HTML}{facba6}
66 | \begin{tikzpicture}[{every node/.append style}=draw]
67 | \node [rectangle,fill=teal2] (country1) at (0, 2.5) {Country 1};
68 | \node [ellipse,fill=peach1] (y11) at (-1.85, 1) {$y_{i,{t = 1990}_1}$};
69 | \node [ellipse,fill=peach1] (y21) at (0, 1) {$y_{i,{t = t}_1}$};
70 | \node [ellipse,fill=peach1] (y31) at (1.85, 1) {$y_{i,{t = 2013}_1}$};
71 | \draw [-latex] (country1) to (y11);
72 | \draw [-latex] (country1) to (y21);
73 | \draw [-latex] (country1) to (y31);
74 |
75 | \node [rectangle,fill=teal3] (country2) at (5.35, 2.5) {Country 2};
76 | \node [ellipse,fill=peach2] (y12) at (4.15, 1) {$y_{i,{1990}_2}$};
77 | \node [draw=none] (y22) at (5.35, 1) {$\dots$};
78 | \node [ellipse,fill=peach2] (y32) at (6.55, 1) {$y_{i,{2013}_2}$};
79 | \draw [-latex] (country2) to (y12);
80 | \draw [-latex] (country2) to (y22);
81 | \draw [-latex] (country2) to (y32);
82 |
83 | \node [draw=none] (dots_top) at (7.85, 2.5) {$\dots$};
84 | \node [draw=none] (dots_bottom) at (7.85, 1) {$\dots$};
85 | \draw [-latex] (dots_top) to (dots_bottom);
86 |
87 | \node [rectangle,fill=teal4] (country_142) at (10.6, 2.5) {Country 142};
88 | \node [ellipse,fill=peach3] (y1_142) at (9.25, 1) {$y_{i,{1990}_{142}}$};
89 | \node [draw=none] (y2_142) at (10.6, 1) {$\dots$};
90 | \node [ellipse,fill=peach3] (y3_142) at (11.95, 1) {$y_{i,{2013}_{142}}$};
91 | \draw [-latex] (country_142) to (y1_142);
92 | \draw [-latex] (country_142) to (y2_142);
93 | \draw [-latex] (country_142) to (y3_142);
94 |
95 | \node [rectangle,fill=teal1,text=white] (population) at (5, 4) {Countries eligible for aid};
96 | \draw [-latex] (population) to (country1);
97 | \draw [-latex] (population) to (country2);
98 | \draw [-latex] (population) to (dots_top);
99 | \draw [-latex] (population) to (country_142);
100 | \end{tikzpicture}
101 | ```
102 |
103 |
104 | ```{r plot-biggest-movers}
105 | #| out-width: 80%
106 | biggest_movers <- df_country_aid_laws %>%
107 | group_by(country) %>%
108 | filter(!any(total_oda == 0)) %>%
109 | summarize(across(c(v2csreprss, total_oda), lst(min, max, diff = ~max(.) - min(.))))
110 |
111 | top_overall <- top_n(biggest_movers, 15, v2csreprss_diff) %>%
112 | filter(country %in% top_n(biggest_movers, 15, total_oda_diff)$country) %>%
113 | top_n(3, v2csreprss_diff)
114 |
115 | df_cs_oda_highlight <- df_country_aid_laws %>%
116 | mutate(highlight_country = ifelse(country %in% top_overall$country,
117 | country, "Other"),
118 | highlight_country = factor(highlight_country, ordered = TRUE),
119 | highlight_country = fct_relevel(highlight_country, "Other", after = Inf)) %>%
120 | mutate(highlight = highlight_country != "Other")
121 |
122 | ggplot(df_cs_oda_highlight, aes(x = v2csreprss, y = total_oda, group = country)) +
123 | geom_point(size = 0.15, alpha = 0.15) +
124 | geom_smooth(method = "lm", aes(group = NULL), color = clrs$Prism[6],
125 | linewidth = 1.25, linetype = "21", se = FALSE, formula = y ~ x) +
126 | geom_path(aes(color = highlight_country, size = highlight),
127 | arrow = arrow(type = "open", angle = 30, length = unit(0.75, "lines")),
128 | key_glyph = "timeseries") +
129 | scale_y_continuous(trans = "log1p", breaks = c(1e7, 1e8, 1e9, 1e10, 1e11),
130 | labels = label_dollar(scale_cut = cut_short_scale())) +
131 | scale_size_manual(values = c(0.075, 1.25), guide = "none") +
132 | scale_color_manual(values = c(clrs$Prism[2], clrs$Prism[7], clrs$Prism[9], "grey50"),
133 | guide = guide_legend(override.aes = list(linewidth = 1))) +
134 | coord_cartesian(ylim = c(1e7, 1e11)) +
135 | labs(x = "Civil society repression\n(Higher values represent less repression)",
136 | y = "Total ODA", color = NULL, size = NULL) +
137 | theme_donors()
138 | ```
139 |
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/renv/.gitignore:
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1 | sandbox/
2 | cellar/
3 | library/
4 | local/
5 | lock/
6 | python/
7 | staging/
8 |
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/renv/settings.dcf:
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1 | external.libraries:
2 | ignored.packages: languageserver
3 | package.dependency.fields: Imports, Depends, LinkingTo
4 | r.version:
5 | snapshot.type: implicit
6 | use.cache: TRUE
7 | vcs.ignore.library: TRUE
8 | vcs.ignore.local: TRUE
9 |
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/testy-turtle.Rproj:
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1 | Version: 1.0
2 |
3 | RestoreWorkspace: No
4 | SaveWorkspace: No
5 | AlwaysSaveHistory: Default
6 |
7 | EnableCodeIndexing: Yes
8 | UseSpacesForTab: Yes
9 | NumSpacesForTab: 2
10 | Encoding: UTF-8
11 |
12 | RnwWeave: Sweave
13 | LaTeX: XeLaTeX
14 |
15 | AutoAppendNewline: Yes
16 |
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