├── .gitattribute ├── .gitignore ├── LICENSE ├── README.md ├── cluster ├── graph-cluster.R └── graph-export-gephi.R ├── cran-network-structure.Rproj ├── output ├── BIOC.GraphML ├── BIOC.gephi ├── CRAN.GraphML ├── CRAN.gephi ├── CRAN.png └── contracted_graph.png ├── pagerank ├── 0-what-is-pagerank.R ├── 1-create-pdb-BIOC.R ├── 1-create-pdb-CRAN.R ├── 2-pagerank.R ├── 3-networkD3.R └── 4-contract-vertices.R ├── pdb ├── depGraph-BIOC.rds ├── depGraph-CRAN.rds ├── pdb-BIOC.rds └── pdb-CRAN.rds └── temp ├── Rplot.png ├── Rplot1.png ├── Rplot2.png ├── graph-bootstrap.R ├── graph-summary-statistics.R ├── networkD3.html ├── plot-power-curve.R ├── random-graph-games.R ├── read-authors-from-CRAN.R ├── singleton-analysis.R └── temp-1-CRAN-BIOC-diff.R /.gitattribute: -------------------------------------------------------------------------------- 1 | *.html linguist-vendored 2 | -------------------------------------------------------------------------------- /.gitignore: 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