├── .gitattributes ├── README.md ├── datasheets ├── .gitkeep ├── Disease-Case_Checklist.csv └── Disease-Case_Checklist.xlsx ├── deploy ├── .gitkeep ├── archive │ ├── .gitkeep │ ├── deployBinaryIII.py │ └── deployBinaryx.py ├── baseline │ ├── .gitkeep │ ├── Lung3DBinary.png │ ├── LungsBinary3D_Fold-1_150K_StepsO.csv │ ├── LungsBinary3D_Fold-1_150K_StepsX.csv │ └── LungsBinary3D_Fold-1_150K_StepsY.csv └── prime │ ├── .gitkeep │ ├── average_predictions.py │ ├── deployBinary.py │ └── readerIVPv.py ├── feed ├── .gitkeep ├── archive │ ├── .gitkeep │ ├── consolidated_metadataIII.py │ └── generator_metadataIII.py ├── post │ ├── consolidated_metadata_v2.py │ └── generator_metadata_v2.py └── prime │ ├── .gitkeep │ └── feed_metadata.py ├── misc ├── .gitkeep ├── FindTushar.py ├── TF-HDF5_meta.py ├── cleanup_probs.py └── demoflip.py ├── models ├── .gitkeep ├── classification │ ├── .gitkeep │ ├── DyFA.py │ └── residual_3DPNet.py └── segmentation │ ├── .gitkeep │ └── densevnet │ ├── .gitkeep │ ├── README.md │ ├── __init__.py │ ├── config.ini │ ├── dice_hinge.py │ └── model_weights │ ├── .gitkeep │ ├── logs │ ├── .gitkeep │ ├── ct.csv │ ├── inference_niftynet_log │ └── settings_inference.txt │ └── models │ ├── .gitkeep │ └── README.md ├── notebooks ├── .gitkeep └── binary_AUC.ipynb ├── preprocess ├── .gitkeep ├── archive │ ├── .gitkeep │ ├── aggregateFeatureMaps.py │ └── preprocess_meta.py ├── post │ ├── preprocess_gamma.py │ └── preprocess_theta.py └── prime │ ├── .gitkeep │ ├── DICOM_NIFTI.py │ ├── patch.py │ ├── preprocess_alpha.py │ ├── preprocess_deploy.py │ └── resampleRes.py ├── reports └── images │ ├── auc.png │ ├── network_architecture.png │ └── segmentation_features.png ├── train ├── .gitkeep ├── archive │ ├── .gitkeep │ ├── patch.py │ ├── readerIII.py │ ├── readerIIIh.py │ ├── readerx.py │ ├── trainIII.py │ ├── trainIIIh.py │ ├── trainIIIx.py │ └── trainx.py └── prime │ ├── .gitkeep │ ├── DyFA.py │ ├── clr.py │ ├── readerIVT.py │ ├── train_DyFA.py │ └── train_StFA.py └── visual ├── .gitkeep └── damaged_lungmasks ├── .gitkeep ├── Lung_DamagedMasks.csv ├── lung_damagedmasks.py ├── lung_masks.py ├── montage.py ├── montage_0.7slice.png └── montage_maxsens.png /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/anindox8/Deep-Segmentation-Features-for-Weakly-Supervised-3D-Disease-Classification-in-Chest-CT/HEAD/.gitattributes -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/anindox8/Deep-Segmentation-Features-for-Weakly-Supervised-3D-Disease-Classification-in-Chest-CT/HEAD/README.md -------------------------------------------------------------------------------- /datasheets/.gitkeep: -------------------------------------------------------------------------------- 1 | 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