├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── RcppExports.R ├── package.R ├── scripts │ ├── makeFigs.R │ └── simu.R └── treeBreaker.R ├── README.md ├── libs ├── kmath.c ├── kmath.h ├── knhx.c └── knhx.h ├── man ├── plot.resTreeBreaker.Rd ├── readOutFile.Rd └── treeBreaker.Rd ├── src ├── Makevars ├── RcppExports.cpp ├── mainR.cpp └── treeBreaker.c ├── testData ├── modify_phylogeny.m ├── phenoTestFile.txt ├── testData.png └── testTree.newick ├── treeBreaker.Rproj └── vignettes ├── intro.Rmd └── intro.html /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ansariazim/treeBreaker/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ansariazim/treeBreaker/HEAD/DESCRIPTION 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