├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── check-standard.yaml │ └── render-rmarkdown.yaml ├── .gitignore ├── DESCRIPTION ├── DynForest.Rproj ├── NAMESPACE ├── NEWS.md ├── R ├── DynForest.R ├── DynTree.R ├── DynTree_surv.R ├── Fact_partitions.R ├── OOB_rfshape.R ├── OOB_tree.R ├── checking.R ├── combine_times.R ├── compute_gvimp.R ├── compute_ooberror.R ├── compute_vardepth.R ├── compute_vimp.R ├── data_simu1.R ├── data_simu2.R ├── getParamMM.R ├── get_tree.R ├── get_treenodes.R ├── impurity.R ├── impurity_split.R ├── pbc2.R ├── plot.R ├── predRE.R ├── pred_MMT.R ├── predict.R ├── print.R ├── rf_shape_para.R ├── summary.R ├── sysdata.rda ├── var_split_factor.R ├── var_split_long.R └── var_split_num.R ├── README.Rmd ├── README.md ├── data ├── data_simu1.RData ├── data_simu2.RData └── pbc2.RData ├── inst └── CITATION ├── man ├── compute_gvimp.Rd ├── compute_ooberror.Rd ├── compute_vardepth.Rd ├── compute_vimp.Rd ├── data_simu1.Rd ├── data_simu2.Rd ├── dynforest.Rd ├── get_tree.Rd ├── get_treenodes.Rd ├── pbc2.Rd ├── plot.dynforest.Rd ├── predict.dynforest.Rd ├── print.dynforest.Rd └── summary.dynforest.Rd └── vignettes ├── .gitignore ├── Figures ├── DynForestR_classi_VIMP.png ├── DynForestR_classi_mindepth.png ├── DynForestR_reg_mindepth.png ├── DynForestR_surv_CIF.png ├── DynForestR_surv_CIF9.png ├── DynForestR_surv_VIMP_gVIMP.png ├── DynForestR_surv_mindepth.png ├── DynForestR_surv_mtrytuned.png ├── DynForestR_surv_predCIF.png └── dynforestR_graph.png ├── classification.Rmd ├── introduction.Rmd ├── overview.Rmd ├── refs.bib ├── regression.Rmd └── survival.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/anthonydevaux/DynForest/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | 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