├── .gitignore ├── LICENSE.md ├── README.md └── ridge_detection ├── cpu_common.mk ├── doc ├── build_tree_scheme.png ├── gpu_time_size_perf3.png ├── rd_alg.png ├── ridge.png ├── thesis │ └── Adam_Rogowiec_Detekcja_Grani_2016.pdf └── tiles │ ├── 2D_ETT_MR_mtc-10000_ntpd-[3_3]_np-100000_mtiles.png │ ├── 2D_GT_LR_mtc-10000_ntpd-[3_3]_np-100000_tid_16.png │ ├── 2D_LT_LR_tiled_tree1.png │ ├── 3D_GT_LR_tiled_tree.png │ └── 3D_LT_LR_tiled_tree.png ├── gpu_common.mk ├── rd ├── cpu │ ├── brute_force │ │ ├── choose.hpp │ │ ├── decimate.hpp │ │ ├── evolve.hpp │ │ ├── order.hpp │ │ ├── rd_inner.hpp │ │ ├── rd_simulation_vis.hpp │ │ ├── rd_simulation_vis.inl │ │ ├── ridge_detection.hpp │ │ └── ridge_detection.inl │ ├── mrupniewski │ │ ├── choose.hpp │ │ ├── decimate.hpp │ │ ├── evolve.hpp │ │ ├── order.hpp │ │ ├── sglib.h │ │ └── util.hpp │ ├── samples_generator.hpp │ └── tiled │ │ ├── grouped_tile_tree.hpp │ │ ├── grouped_tile_tree.inl │ │ ├── local_tile_tree.hpp │ │ ├── local_tile_tree.inl │ │ ├── rd_tiled.hpp │ │ ├── tile.hpp │ │ └── tree_node.hpp ├── gpu │ ├── agent │ │ ├── agent_dist_mtx.cuh │ │ ├── agent_find_bounds.cuh │ │ ├── agent_memcpy.cuh │ │ ├── agent_spatial_histogram.cuh │ │ └── agent_tiled_ridge_detection.cuh │ ├── block │ │ ├── block_dynamic_vector.cuh │ │ ├── block_select_if.cuh │ │ ├── block_select_if_dv.cuh │ │ ├── block_tile_load_store4.cuh │ │ ├── cta_copy_table.cuh │ │ └── cta_count_neighbour_points.cuh │ ├── device │ │ ├── bounding_box.cuh │ │ ├── brute_force │ │ │ ├── choose.cuh │ │ │ ├── choose2.cuh │ │ │ ├── decimate.cuh │ │ │ ├── decimate2.cuh │ │ │ ├── decimate_dist_mtx.cuh │ │ │ ├── evolve.cuh │ │ │ ├── rd_dp.cuh │ │ │ ├── rd_globals.cuh │ │ │ ├── simulation.cuh │ │ │ ├── simulation.inl │ │ │ └── test │ │ │ │ └── decimate_nan_marker1.cuh │ │ ├── device_choose.cuh │ │ ├── device_decimate.cuh │ │ ├── device_distance_mtx.cuh │ │ ├── device_evolve.cuh │ │ ├── device_find_bounds.cuh │ │ ├── device_ridge_detection.cuh │ │ ├── device_spatial_histogram.cuh │ │ ├── device_tiled_decimate.cuh │ │ ├── device_tiled_ridge_detection.cuh │ │ ├── dispatch │ │ │ ├── dispatch_choose.cuh │ │ │ ├── dispatch_decimate.cuh │ │ │ ├── dispatch_decimate_dist_mtx.cuh │ │ │ ├── dispatch_distance_mtx.cuh │ │ │ ├── dispatch_evolve.cuh │ │ │ ├── dispatch_find_bounds.cuh │ │ │ ├── dispatch_ridge_detection.cuh │ │ │ ├── dispatch_spatial_histogram.cuh │ │ │ ├── dispatch_tiled_decimate.cuh │ │ │ └── dispatch_tiled_ridge_detection.cuh │ │ ├── samples_generator.cuh │ │ └── tiled │ │ │ ├── agent_build_tiled_tree.cuh │ │ │ ├── decimate.cuh │ │ │ ├── simulation.cuh │ │ │ ├── tiled_tree.cuh │ │ │ ├── tiled_tree_node.cuh │ │ │ ├── tiled_tree_root.cuh │ │ │ └── tree_drawer.cuh │ ├── thread │ │ ├── thread_private_storage.cuh │ │ └── thread_sqr_euclidean_dist.cuh │ ├── util │ │ ├── data_order_traits.hpp │ │ ├── dev_arch.cuh │ │ ├── dev_math.cuh │ │ ├── dev_memcpy.cuh │ │ ├── dev_samples_set.cuh │ │ ├── dev_static_for.cuh │ │ └── dev_utilities.cuh │ └── warp │ │ └── warp_functions.cuh └── utils │ ├── assessment_quality.hpp │ ├── bounding_box.hpp │ ├── box_muller.hpp │ ├── cmd_line_parser.hpp │ ├── graph_drawer.hpp │ ├── histogram.hpp │ ├── macro.h │ ├── memory.h │ ├── name_traits.hpp │ ├── rd_params.hpp │ ├── rd_samples.cuh │ ├── samples_set.hpp │ ├── sim_state_desc.hpp │ └── utilities.hpp ├── tests ├── test_choose_kernel │ ├── v1 │ │ ├── Makefile │ │ ├── benchmark_choose.cu │ │ └── test_choose.cu │ └── v2 │ │ ├── Makefile │ │ └── test_choose_v2.cu ├── test_count_neighbours │ ├── Makefile │ ├── benchmark_count_neighbours.cu │ ├── test_count_dist_points.cu │ └── test_count_neighbours.cu ├── test_cpu_samples_set │ ├── Makefile │ ├── samples_generator.cpp │ ├── test_cpu_samples_set.cpp │ └── ut_cpu_samples_set.hpp ├── test_decimate_kernel │ ├── nan_marker │ │ ├── Makefile │ │ ├── benchmark_nan_marker.cu │ │ └── test_nan_marker.cu │ ├── tiled │ │ ├── Makefile │ │ ├── benchmark_launch_conf.cu │ │ ├── benchmark_launch_conf2.cu │ │ └── test_tiled_global_decimate.cu │ ├── v1 │ │ ├── Makefile │ │ ├── benchmark_decimate.cu │ │ └── test_decimate.cu │ └── v2 │ │ ├── Makefile │ │ └── test_inner_decimate.cu ├── test_distance_mtx │ ├── Makefile │ └── benchmark_dist_mtx.cu ├── test_dynamic_vector │ ├── Makefile │ ├── test_dynamic_vector.cu │ └── test_simple.cu ├── test_evolve_brute_force │ ├── Makefile │ ├── benchmark_dev_evolve.cu │ ├── benchmark_lc_evolve.cu │ ├── evolve_gold.hpp │ └── test_dev_evolve.cu ├── test_find_bounds │ ├── Makefile │ └── benchmark_find_bounds_v4.cu ├── test_gpu_samples_set │ ├── Makefile │ ├── samples_generator.cu │ ├── test_gpu_samples_set.cu │ └── ut_gpu_samples_set.cuh ├── test_gpu_tiled_tree │ ├── Makefile │ └── test_tiled_tree.cu ├── test_load_store │ ├── Makefile │ ├── bandwidths.gnu │ └── test_tile_load_store_v4.cu ├── test_partition │ ├── Makefile │ ├── benchmark_lc_select_if_mbf.cu │ ├── benchmark_select_if_mem_bf.cu │ ├── benchmark_select_if_mem_dv.cu │ ├── drawPerfGraph.gp │ └── select_if_bandwidth.gp ├── test_rd_cpu_simulation │ ├── brute_force │ │ ├── Makefile │ │ ├── benchmark.cpp │ │ └── test_rd_cpu_simulation.cpp │ └── tiled │ │ ├── Makefile │ │ ├── benchmark_tiled_tree.cpp │ │ ├── benchmark_tiled_tree2.cpp │ │ ├── draw_graph.gp │ │ ├── draw_graph2.gp │ │ └── test_tiled_tree.cpp ├── test_rd_gpu_simulation │ ├── brute_force │ │ ├── Makefile │ │ ├── benchmark.cu │ │ ├── draw_cpu_gpu_quality_cmp.gp │ │ ├── draw_gpu_cpu_perf_compare.gp │ │ └── simulation.cu │ └── tiled │ │ ├── Makefile │ │ ├── benchmark.cu │ │ ├── draw_gpu_cpu_perf_cmp.gp │ │ ├── draw_gpu_quality_cmp.gp │ │ ├── draw_time_dim_perf.gp │ │ ├── draw_time_dim_perf2.gp │ │ ├── draw_time_size_perf.gp │ │ ├── draw_time_size_perf2.gp │ │ └── draw_tsize_ntpdim_mtx.gp ├── test_rd_mrupniewski_sim │ ├── Makefile │ ├── benchmark.cpp │ ├── proc09.c │ └── rd_mr.cpp ├── test_spatial_histogram │ ├── Makefile │ ├── benchmark_spatial_histogram_v4.cu │ ├── hist_perf.gnu │ ├── hist_perf2.gp │ └── test_spatial_histogram.cu └── test_util.hpp └── third-party ├── cub ├── agent │ ├── agent_histogram.cuh │ ├── agent_radix_sort_downsweep.cuh │ ├── agent_radix_sort_upsweep.cuh │ ├── agent_reduce.cuh │ ├── agent_reduce_by_key.cuh │ ├── agent_rle.cuh │ ├── agent_scan.cuh │ ├── agent_segment_fixup.cuh │ ├── agent_select_if.cuh │ ├── agent_spmv_csrt.cuh │ ├── agent_spmv_orig.cuh │ ├── agent_spmv_row_based.cuh │ └── single_pass_scan_operators.cuh ├── block │ ├── block_discontinuity.cuh │ ├── block_exchange.cuh │ ├── block_histogram.cuh │ ├── block_load.cuh │ ├── block_radix_rank.cuh │ ├── block_radix_sort.cuh │ ├── block_raking_layout.cuh │ ├── block_reduce.cuh │ ├── block_reduce_by_key.cuh │ ├── block_scan.cuh │ ├── block_shuffle.cuh │ ├── block_store.cuh │ └── specializations │ │ ├── block_histogram_atomic.cuh │ │ ├── block_histogram_sort.cuh │ │ ├── block_reduce_raking.cuh │ │ ├── block_reduce_raking_commutative_only.cuh │ │ ├── block_reduce_warp_reductions.cuh │ │ ├── block_scan_raking.cuh │ │ └── block_scan_warp_scans.cuh ├── device │ ├── device_histogram.cuh │ ├── device_partition.cuh │ ├── device_radix_sort.cuh │ ├── device_reduce.cuh │ ├── device_run_length_encode.cuh │ ├── device_scan.cuh │ ├── device_segmented_radix_sort.cuh │ ├── device_segmented_reduce.cuh │ ├── device_select.cuh │ ├── device_spmv.cuh │ └── dispatch │ │ ├── dispatch_histogram.cuh │ │ ├── dispatch_radix_sort.cuh │ │ ├── dispatch_reduce.cuh │ │ ├── dispatch_reduce_by_key.cuh │ │ ├── dispatch_rle.cuh │ │ ├── dispatch_scan.cuh │ │ ├── dispatch_select_if.cuh │ │ ├── dispatch_spmv_csrt.cuh │ │ ├── dispatch_spmv_orig.cuh │ │ └── dispatch_spmv_row_based.cuh ├── grid │ ├── grid_barrier.cuh │ ├── grid_even_share.cuh │ ├── grid_mapping.cuh │ └── grid_queue.cuh ├── host │ └── mutex.cuh ├── iterator │ ├── arg_index_input_iterator.cuh │ ├── cache_modified_input_iterator.cuh │ ├── cache_modified_output_iterator.cuh │ ├── constant_input_iterator.cuh │ ├── counting_input_iterator.cuh │ ├── tex_obj_input_iterator.cuh │ ├── tex_ref_input_iterator.cuh │ └── transform_input_iterator.cuh ├── test_util.h ├── thread │ ├── thread_load.cuh │ ├── thread_operators.cuh │ ├── thread_reduce.cuh │ ├── thread_scan.cuh │ ├── thread_search.cuh │ └── thread_store.cuh ├── util_allocator.cuh ├── util_arch.cuh ├── util_debug.cuh ├── util_device.cuh ├── util_macro.cuh ├── util_namespace.cuh ├── util_ptx.cuh ├── util_type.cuh └── warp │ ├── specializations │ ├── warp_reduce_shfl.cuh │ ├── warp_reduce_smem.cuh │ ├── warp_scan_shfl.cuh │ └── warp_scan_smem.cuh │ ├── warp_reduce.cuh │ └── warp_scan.cuh └── trove ├── aos.h ├── array.h ├── block.h ├── detail ├── dismember.h └── fallback.h ├── memory.h ├── print_array.h ├── ptr.h ├── rotate.h ├── shfl.h ├── static_gcd.h ├── static_mod_inverse.h ├── transpose.h ├── utility.h └── warp.h /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aosewski/RidgeDetection/HEAD/.gitignore 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