bundles = new ArrayList<>();
37 |
38 | @After
39 | public void closeBundle() throws IOException {
40 | for (Bundle b : bundles) {
41 | b.close();
42 | }
43 | }
44 |
45 | @Override
46 | protected Path tempDir(String name) throws IOException {
47 | Bundle bundle = Bundles.createBundle();
48 | bundles.add(bundle);
49 | return Files.createTempDirectory(bundle.getRoot(), name);
50 | }
51 | }
52 |
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/taverna-robundle/src/test/java/org/apache/taverna/robundle/validator/ValidatorTest.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.robundle.validator;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 | import static org.junit.Assert.assertNotNull;
22 |
23 | import java.nio.file.Files;
24 | import java.nio.file.Path;
25 | import java.nio.file.StandardCopyOption;
26 |
27 | import org.junit.Test;
28 |
29 | public class ValidatorTest {
30 |
31 | Path path;
32 |
33 | @Test
34 | public void test() throws Exception{
35 |
36 | path = Files.createTempFile("test", ".bundle.zip");
37 | path.toFile().deleteOnExit();
38 | Files.copy(getClass().getResourceAsStream("/workflowrun.bundle.zip"), path, StandardCopyOption.REPLACE_EXISTING);
39 |
40 | RoValidator validator = new RoValidator(path);
41 | ValidationReport r = validator.check();
42 |
43 | assertNotNull("Errors List", r.getErrorList_l());
44 | assertNotNull("Warnings List", r.getInfoWarnings());
45 | assertNotNull("Info Warnings List", r.getInfoWarnings_l());
46 |
47 | Files.delete(path);
48 | }
49 |
50 | }
51 |
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/taverna-robundle/src/test/resources/bag-of-bags-manifest.json:
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1 | {
2 | "@context": [
3 | "https://w3id.org/bundle/context"
4 | ],
5 | "@id": "../",
6 | "aggregates": [
7 | {
8 | "bundledAs": {
9 | "filename": "bag1.zip",
10 | "folder": "../data/"
11 | },
12 | "conformsTo": [
13 | "https://tools.ietf.org/html/draft-kunze-bagit-14",
14 | "https://w3id.org/ro/bagit/profile"
15 | ],
16 | "uri": "http://n2t.net/ark:/57799/b90h3c"
17 | }
18 | ],
19 | "annotations": [
20 | {
21 | "about": "../",
22 | "oa:motivatedBy": {
23 | "@id": "oa:describing"
24 | },
25 | "uri": "../data/README"
26 | }
27 | ],
28 | "authoredBy": {
29 | "name": "Stian Soiland-Reyes",
30 | "uri": "mbox:stain@apache.org",
31 | "orcid": "https://orcid.org/0000-0001-9842-9718"
32 | },
33 | "authoredOn": "2018-05-10T16:07:00+00:00",
34 | "createdBy": {
35 | "name": "BDBag version: 1.1.5 (Bagit version: 1.6.3)",
36 | "uri": "https://github.com/ini-bdds/bdbag"
37 | },
38 | "createdOn": "2018-05-10T16:07:00+00:00"
39 | }
40 |
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/taverna-robundle/src/test/resources/win8.url:
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1 | [{000214A0-0000-0000-C000-000000000046}]
2 | Prop3=19,2
3 | [InternetShortcut]
4 | IDList=
5 | URL=http://example.com/made-in-windows-8
6 |
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/taverna-scufl2-api/.gitignore:
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1 | target
2 | .settings
3 | .project
4 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/activity/package-info.java:
--------------------------------------------------------------------------------
1 |
2 | package org.apache.taverna.scufl2.api.activity;
3 |
4 | /*
5 | * Licensed to the Apache Software Foundation (ASF) under one
6 | * or more contributor license agreements. See the NOTICE file
7 | * distributed with this work for additional information
8 | * regarding copyright ownership. The ASF licenses this file
9 | * to you under the Apache License, Version 2.0 (the
10 | * "License"); you may not use this file except in compliance
11 | * with the License. You may obtain a copy of the License at
12 | *
13 | * http://www.apache.org/licenses/LICENSE-2.0
14 | *
15 | * Unless required by applicable law or agreed to in writing,
16 | * software distributed under the License is distributed on an
17 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
18 | * KIND, either express or implied. See the License for the
19 | * specific language governing permissions and limitations
20 | * under the License.
21 | */
22 |
23 |
24 |
25 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/annotation/package-info.java:
--------------------------------------------------------------------------------
1 | /**
2 | * Common annotations
3 | *
4 | */
5 | package org.apache.taverna.scufl2.api.annotation;
6 |
7 | /*
8 | * Licensed to the Apache Software Foundation (ASF) under one
9 | * or more contributor license agreements. See the NOTICE file
10 | * distributed with this work for additional information
11 | * regarding copyright ownership. The ASF licenses this file
12 | * to you under the Apache License, Version 2.0 (the
13 | * "License"); you may not use this file except in compliance
14 | * with the License. You may obtain a copy of the License at
15 | *
16 | * http://www.apache.org/licenses/LICENSE-2.0
17 | *
18 | * Unless required by applicable law or agreed to in writing,
19 | * software distributed under the License is distributed on an
20 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
21 | * KIND, either express or implied. See the License for the
22 | * specific language governing permissions and limitations
23 | * under the License.
24 | */
25 |
26 |
27 |
28 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Configurable.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.configurations.Configuration;
24 |
25 | /**
26 | * {@link WorkflowBean WorkflowBeans} that can have a
27 | * {@link org.apache.taverna.scufl2.api.configurations.Configuration Configuration}.
28 | *
29 | * Configurables are {@link Typed}, but note that this type is different from
30 | * the type of the {@link Configuration}.
31 | *
32 | * @author Alan R Williams
33 | * @author Stian Soiland-Reyes
34 | */
35 | public interface Configurable extends Typed {
36 | }
37 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Named.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import java.util.regex.Pattern;
24 |
25 | /**
26 | * A named {@link WorkflowBean}.
27 | *
28 | * @author Alan R Williams
29 | */
30 | @SuppressWarnings("rawtypes")
31 | public interface Named extends WorkflowBean, Comparable {
32 | /**
33 | * Name must not match this regular expression, e.g. must not include: slash
34 | * (/), colon (:), ASCII control characters
35 | */
36 | Pattern INVALID_NAME = Pattern.compile("^$|[/:\\x7f\\x00-\\x1f]");
37 |
38 | /**
39 | * Returns the name of the {@link WorkflowBean}.
40 | *
41 | * @return the name of the WorkflowBean
42 | */
43 | String getName();
44 |
45 | /**
46 | * Sets the name of the {@link WorkflowBean}.
47 | *
48 | * The name must not be null, not be an empty
49 | * String, and must not match the {@link #INVALID_NAME} regular expression.
50 | *
51 | * @param name
52 | * the name of the WorkflowBean
53 | */
54 | void setName(String name);
55 | }
56 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Ported.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.port.InputPort;
24 | import org.apache.taverna.scufl2.api.port.OutputPort;
25 |
26 | /**
27 | * A {@link WorkflowBean} that has
28 | * {@link org.apache.taverna.scufl2.api.portInputPort InputPorts} and
29 | * {@link org.apache.taverna.scufl2.api.portOutputPort OutputPorts}.
30 | */
31 | public interface Ported extends WorkflowBean {
32 | /**
33 | * Returns the {@link org.apache.taverna.scufl2.api.port.InputPort InputPorts}.
34 | *
35 | * @return the input ports
36 | */
37 | NamedSet getInputPorts();
38 |
39 | /**
40 | * Returns the {@link org.apache.taverna.scufl2.api.port.OutputPort OutputPorts}
41 | * .
42 | *
43 | * @return the output ports
44 | */
45 | NamedSet getOutputPorts();
46 | }
47 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Root.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import java.net.URI;
24 |
25 | public interface Root extends WorkflowBean {
26 | URI getGlobalBaseURI();
27 |
28 | void setGlobalBaseURI(URI globalBaseURI);
29 | }
30 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Typed.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import java.net.URI;
24 |
25 | /**
26 | * A typed {@link WorkflowBean}.
27 | *
28 | * @author Stian Soiland-Reyes
29 | */
30 | public interface Typed extends WorkflowBean {
31 | /**
32 | * Returns the type of the {@link WorkflowBean}.
33 | *
34 | * @return the type of the WorkflowBean
35 | */
36 | URI getType();
37 |
38 | /**
39 | * Sets the type of the {@link WorkflowBean}.
40 | *
41 | * @param type
42 | * the type of the WorkflowBean.
43 | */
44 | void setType(URI type);
45 | }
46 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
24 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/container/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.container;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/ControlLink.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.core;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.common.Child;
24 |
25 | /**
26 | * A link between two workflow components where one component controls the other in some way.
27 | *
28 | * @author Alan R Williams
29 | * @author Stian Soiland-Reyes
30 | */
31 | @SuppressWarnings("rawtypes")
32 | public interface ControlLink extends Child, Comparable {
33 |
34 | }
35 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.core;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyNode.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.iterationstrategy;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.common.Child;
24 |
25 | /**
26 | * @author Alan R Williams
27 | */
28 | public interface IterationStrategyNode extends
29 | Child {
30 | }
31 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyParent.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.iterationstrategy;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
24 |
25 | public interface IterationStrategyParent extends WorkflowBean {
26 | }
27 |
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/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyTopNode.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.iterationstrategy;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import java.util.List;
24 |
25 | /**
26 | * @author Stian Soiland-Reyes
27 | */
28 | public interface IterationStrategyTopNode extends IterationStrategyNode,
29 | List, IterationStrategyParent {
30 | }
31 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.iterationstrategy;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/ActivityPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.activity.Activity;
24 | import org.apache.taverna.scufl2.api.common.Child;
25 |
26 | /**
27 | * A Port that specifies the data consumed or produced by an
28 | * {@link Activity}.
29 | */
30 | public interface ActivityPort extends DepthPort, Child {
31 |
32 | }
33 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/DepthPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | public interface DepthPort extends Port {
24 | /**
25 | * Returns the depth of the Port.
26 | *
27 | * @return the depth of the Port
28 | */
29 | Integer getDepth();
30 |
31 | /**
32 | * Sets the depth of the Port.
33 | *
34 | * @param depth
35 | * the depth of the Port
36 | */
37 | void setDepth(Integer depth);
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/GranularDepthPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | public interface GranularDepthPort extends DepthPort {
24 | /**
25 | * Returns the granular depth of the Port.
26 | *
27 | * @return the granular depth of the Port
28 | */
29 | Integer getGranularDepth();
30 |
31 | /**
32 | * Sets the granular depth of the Port.
33 | *
34 | * @param granularDepth
35 | * the granular depth of the Port
36 | */
37 | void setGranularDepth(Integer granularDepth);
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/InputPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | /**
24 | * A Port that specifies inputs to a {@link org.apache.taverna.scufl2.api.core.Workflow
25 | * Workflow} component.
26 | */
27 | public interface InputPort extends DepthPort {
28 |
29 | }
30 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/OutputPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | /**
24 | * A Port that specifies outputs from a {@link org.apache.taverna.scufl2.api.core.Workflow
25 | * Workflow} component.
26 | */
27 | public interface OutputPort extends Port {
28 |
29 | }
30 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/Port.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.common.Named;
24 |
25 | /**
26 | * A Port specifies the data consumed or produced by a
27 | * {@link org.apache.taverna.scufl2.api.core.Workflow Workflow} component.
28 | *
29 | * @author Alan R Williams
30 | */
31 | public interface Port extends Named {
32 | }
33 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/ProcessorPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.common.Child;
24 | import org.apache.taverna.scufl2.api.core.Processor;
25 |
26 | /**
27 | * A Port that specifies the data consumed or produced by an
28 | * {@link Processor}.
29 | *
30 | * @author Alan R Williams
31 | */
32 | public interface ProcessorPort extends Port, Child {
33 | }
34 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/ReceiverPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.core.DataLink;
24 | import org.apache.taverna.scufl2.api.core.Workflow;
25 |
26 | /**
27 | * A Port that receives data from a {@link DataLink} in a {@link Workflow}.
28 | *
29 | * @see SenderPort
30 | * @see DataLink
31 | * @author Alan R Williams
32 | * @author Stian Soiland-Reyes
33 | */
34 | public interface ReceiverPort extends Port {
35 |
36 | }
37 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/SenderPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.core.DataLink;
24 | import org.apache.taverna.scufl2.api.core.Workflow;
25 |
26 | /**
27 | * A Port that sends data out to a {@link DataLink} in a {@link Workflow}.
28 | *
29 | * @see DataLink
30 | * @see Workflow
31 | * @author Alan R Williams
32 | * @author Stian Soiland-Reyes
33 | */
34 | public interface SenderPort extends Port {
35 |
36 | }
37 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/WorkflowPort.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.common.Child;
24 | import org.apache.taverna.scufl2.api.core.Workflow;
25 |
26 | /**
27 | * A Port that specifies the data consumed or produced by an
28 | * {@link Workflow}.
29 | *
30 | * @author Alan R Williams
31 | */
32 | public interface WorkflowPort extends Port, Child {
33 |
34 | }
35 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.port;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
24 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.profiles;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/reference/package-info.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.reference;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 |
24 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/Status.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | /**
28 | * @author alanrw
29 | */
30 | public enum Status {
31 | OK, WARNING, SEVERE
32 | }
33 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/ValidationException.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | /**
28 | * @author alanrw
29 | */
30 | @SuppressWarnings("serial")
31 | public class ValidationException extends Exception {
32 | public ValidationException(String string) {
33 | super(string);
34 | }
35 |
36 | public ValidationException(String string, Throwable throwable) {
37 | super(string, throwable);
38 | }
39 | }
40 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/ValidationProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 |
29 | /**
30 | * @author alanrw
31 | */
32 | public abstract class ValidationProblem {
33 | private final WorkflowBean bean;
34 |
35 | public ValidationProblem(WorkflowBean bean) {
36 | this.bean = bean;
37 | }
38 |
39 | /**
40 | * @return the bean
41 | */
42 | public WorkflowBean getBean() {
43 | return bean;
44 | }
45 | }
46 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/ValidationReport.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | public interface ValidationReport {
25 | /**
26 | * @return Whether any problems were detected during the validation.
27 | */
28 | boolean detectedProblems();
29 |
30 | /**
31 | * @return An exception to throw to report the problems, or null if
32 | * there are no problems to report.
33 | */
34 | ValidationException getException();
35 | }
36 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/Validator.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.container.WorkflowBundle;
25 |
26 | /**
27 | * How to check a workflow bundle for validity in some sense.
28 | *
29 | * @param
30 | * The type of the validation reports produced by this validator.
31 | * @author Donal Fellows
32 | */
33 | public interface Validator {
34 | /**
35 | * Validate the given workflow bundle.
36 | *
37 | * @param workflowBundle
38 | * The bundle to validate.
39 | * @return A description of whether the bundle is valid, and if not, how it
40 | * is invalid. (Determining the nature of the invalidity may require
41 | * knowing more about the nature of the validator than this
42 | * interface describes.)
43 | */
44 | T validate(WorkflowBundle workflowBundle);
45 | }
46 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/WorkflowBeanReport.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
25 |
26 | public interface WorkflowBeanReport {
27 | /**
28 | * @return the bean
29 | */
30 | WorkflowBean getBean();
31 | }
32 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/CorrectnessValidator.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.correctness;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.api.container.WorkflowBundle;
29 | import org.apache.taverna.scufl2.validation.Validator;
30 |
31 |
32 | /**
33 | * @author alanrw
34 | */
35 | public class CorrectnessValidator implements Validator {
36 | public void checkCorrectness(WorkflowBean bean, boolean checkComplete,
37 | CorrectnessValidationListener listener) {
38 | CorrectnessVisitor visitor = new CorrectnessVisitor(checkComplete,
39 | listener);
40 | bean.accept(visitor);
41 | }
42 |
43 | @Override
44 | public CorrectnessValidationListener validate(WorkflowBundle workflowBundle) {
45 | CorrectnessValidationListener l = new ReportCorrectnessValidationListener();
46 | checkCorrectness(workflowBundle, false, l);
47 | return l;
48 | }
49 | }
50 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/EmptyIterationStrategyTopNodeProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.correctness.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.iterationstrategy.IterationStrategyTopNode;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | /**
29 | * @author alanrw
30 | *
31 | */
32 | public class EmptyIterationStrategyTopNodeProblem extends ValidationProblem {
33 | public EmptyIterationStrategyTopNodeProblem(IterationStrategyTopNode bean) {
34 | super(bean);
35 | }
36 |
37 | @Override
38 | public String toString() {
39 | return getBean() + " is empty";
40 | }
41 | }
42 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/IncompatibleGranularDepthProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.correctness.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.port.AbstractGranularDepthPort;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | /**
29 | * @author alanrw
30 | */
31 | public class IncompatibleGranularDepthProblem extends ValidationProblem {
32 | private final Integer depth;
33 | private final Integer granularDepth;
34 |
35 | public IncompatibleGranularDepthProblem(AbstractGranularDepthPort bean,
36 | Integer depth, Integer granularDepth) {
37 | super(bean);
38 | this.depth = depth;
39 | this.granularDepth = granularDepth;
40 | }
41 |
42 | /**
43 | * @return the depth
44 | */
45 | public Integer getDepth() {
46 | return depth;
47 | }
48 |
49 | /**
50 | * @return the granularDepth
51 | */
52 | public Integer getGranularDepth() {
53 | return granularDepth;
54 | }
55 |
56 | @Override
57 | public String toString() {
58 | return getBean() + " has depth " + depth + " and granular depth "
59 | + granularDepth;
60 | }
61 | }
62 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/MismatchConfigurableTypeProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.correctness.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.Configurable;
28 | import org.apache.taverna.scufl2.api.configurations.Configuration;
29 | import org.apache.taverna.scufl2.validation.ValidationProblem;
30 |
31 |
32 | public class MismatchConfigurableTypeProblem extends ValidationProblem {
33 | private final Configurable configurable;
34 |
35 | public MismatchConfigurableTypeProblem(Configuration configuration,
36 | Configurable configurable) {
37 | super(configuration);
38 | this.configurable = configurable;
39 | }
40 |
41 | /**
42 | * @return the configurable
43 | */
44 | public Configurable getConfigurable() {
45 | return configurable;
46 | }
47 |
48 | @Override
49 | public String toString() {
50 | return "The types of " + getBean() + " and " + configurable
51 | + " are mismatched";
52 | }
53 | }
54 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/NegativeValueProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.correctness.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | public class NegativeValueProblem extends ValidationProblem {
32 | private final String fieldName;
33 | private final Integer fieldValue;
34 |
35 | public NegativeValueProblem(WorkflowBean bean, String fieldName,
36 | Integer fieldValue) {
37 | super(bean);
38 | this.fieldName = fieldName;
39 | this.fieldValue = fieldValue;
40 | }
41 |
42 | /**
43 | * @return the fieldName
44 | */
45 | public String getFieldName() {
46 | return fieldName;
47 | }
48 |
49 | /**
50 | * @return the fieldValue
51 | */
52 | public Integer getFieldValue() {
53 | return fieldValue;
54 | }
55 |
56 | @Override
57 | public String toString() {
58 | return getBean() + " has " + fieldName + " of value " + fieldValue;
59 | }
60 | }
61 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/NonAbsoluteURIProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.correctness.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import java.net.URI;
28 |
29 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
30 | import org.apache.taverna.scufl2.validation.ValidationProblem;
31 |
32 |
33 | public class NonAbsoluteURIProblem extends ValidationProblem {
34 | private String fieldName;
35 | private URI fieldValue;
36 |
37 | public NonAbsoluteURIProblem(WorkflowBean bean, String fieldName,
38 | URI fieldValue) {
39 | super(bean);
40 | this.fieldName = fieldName;
41 | this.fieldValue = fieldValue;
42 | }
43 |
44 | /**
45 | * @return the fieldName
46 | */
47 | public String getFieldName() {
48 | return fieldName;
49 | }
50 |
51 | /**
52 | * @return the fieldValue
53 | */
54 | public URI getFieldValue() {
55 | return fieldValue;
56 | }
57 |
58 | @Override
59 | public String toString() {
60 | return getBean() + "has a non-absolute URI in field " + fieldName
61 | + " of value " + fieldValue;
62 | }
63 | }
64 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/NullFieldProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.correctness.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | public class NullFieldProblem extends ValidationProblem {
32 | private final String fieldName;
33 |
34 | public NullFieldProblem(WorkflowBean bean, String fieldName) {
35 | super(bean);
36 | this.fieldName = fieldName;
37 | }
38 |
39 | /**
40 | * @return the fieldName
41 | */
42 | public String getFieldName() {
43 | return fieldName;
44 | }
45 |
46 | @Override
47 | public String toString() {
48 | return getBean() + " has a null " + fieldName;
49 | }
50 | }
51 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/OutOfScopeValueProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.correctness.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | /**
29 | * @author alanrw
30 | */
31 | public class OutOfScopeValueProblem extends ValidationProblem {
32 | private final String fieldName;
33 | private final Object value;
34 |
35 | public OutOfScopeValueProblem(WorkflowBean bean, String fieldName,
36 | Object value) {
37 | super(bean);
38 | this.fieldName = fieldName;
39 | this.value = value;
40 | }
41 |
42 | /**
43 | * @return the fieldName
44 | */
45 | public String getFieldName() {
46 | return fieldName;
47 | }
48 |
49 | /**
50 | * @return the value
51 | */
52 | public Object getValue() {
53 | return value;
54 | }
55 |
56 | @Override
57 | public String toString() {
58 | return getBean() + " has " + fieldName + " with out of scope value " + value;
59 | }
60 | }
61 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/PortMentionedTwiceProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.correctness.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.iterationstrategy.IterationStrategyNode;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | /**
29 | * @author alanrw
30 | */
31 | public class PortMentionedTwiceProblem extends ValidationProblem {
32 | private final IterationStrategyNode duplicateNode;
33 |
34 | public PortMentionedTwiceProblem(IterationStrategyNode originalNode,
35 | IterationStrategyNode duplicateNode) {
36 | super(originalNode);
37 | this.duplicateNode = duplicateNode;
38 | }
39 |
40 | /**
41 | * @return the iterationStrategyNode
42 | */
43 | public IterationStrategyNode getDuplicateNode() {
44 | return duplicateNode;
45 | }
46 |
47 | @Override
48 | public String toString() {
49 | return (getBean() + " and " + duplicateNode + " reference the same port");
50 | }
51 | }
52 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/PortMissingFromIterationStrategyStackProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.correctness.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.iterationstrategy.IterationStrategyStack;
25 | import org.apache.taverna.scufl2.api.port.Port;
26 | import org.apache.taverna.scufl2.validation.ValidationProblem;
27 |
28 |
29 | /**
30 | * @author alanrw
31 | *
32 | */
33 | public class PortMissingFromIterationStrategyStackProblem extends
34 | ValidationProblem {
35 | private final Port port;
36 |
37 | public PortMissingFromIterationStrategyStackProblem(Port port,
38 | IterationStrategyStack iterationStrategyStack) {
39 | super(iterationStrategyStack);
40 | this.port = port;
41 | }
42 |
43 | /**
44 | * @return the port
45 | */
46 | public Port getPort() {
47 | return port;
48 | }
49 |
50 | @Override
51 | public String toString() {
52 | return getBean() + " does not include " + port;
53 | }
54 | }
55 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/WrongParentProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.correctness.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | public class WrongParentProblem extends ValidationProblem {
32 | public WrongParentProblem(WorkflowBean bean) {
33 | super(bean);
34 | }
35 |
36 | @Override
37 | public String toString() {
38 | return getBean() + " does not have the correct parent";
39 | }
40 | }
41 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/DotProductIterationMismatchProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class DotProductIterationMismatchProblem extends ValidationProblem {
35 | public DotProductIterationMismatchProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/EmptyCrossProductProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.structural.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | public class EmptyCrossProductProblem extends ValidationProblem {
29 | public EmptyCrossProductProblem(WorkflowBean bean) {
30 | super(bean);
31 | }
32 | }
33 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/EmptyDotProductProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.structural.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | public class EmptyDotProductProblem extends ValidationProblem {
29 | public EmptyDotProductProblem(WorkflowBean bean) {
30 | super(bean);
31 | }
32 | }
33 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/FailedProcessorProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class FailedProcessorProblem extends ValidationProblem {
35 | public FailedProcessorProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/IncompleteWorkflowProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class IncompleteWorkflowProblem extends ValidationProblem {
35 | public IncompleteWorkflowProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/MissingIterationStrategyStackProblem.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.validation.structural.report;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
25 | import org.apache.taverna.scufl2.validation.ValidationProblem;
26 |
27 |
28 | public class MissingIterationStrategyStackProblem extends ValidationProblem {
29 | public MissingIterationStrategyStackProblem(WorkflowBean bean) {
30 | super(bean);
31 | }
32 | }
33 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/MissingMainIncomingDataLinkProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class MissingMainIncomingDataLinkProblem extends ValidationProblem {
35 | public MissingMainIncomingDataLinkProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/UnrecognizedIterationStrategyNodeProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class UnrecognizedIterationStrategyNodeProblem extends ValidationProblem {
35 | public UnrecognizedIterationStrategyNodeProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/UnresolvedOutputProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class UnresolvedOutputProblem extends ValidationProblem {
35 | public UnresolvedOutputProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/UnresolvedProcessorProblem.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.validation.structural.report;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.validation.ValidationProblem;
29 |
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class UnresolvedProcessorProblem extends ValidationProblem {
35 | public UnresolvedProcessorProblem(WorkflowBean bean) {
36 | super(bean);
37 | }
38 | }
39 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleReader:
--------------------------------------------------------------------------------
1 | # Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
org.apache.taverna.scufl2.api.io.structure.StructureReader
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleWriter:
--------------------------------------------------------------------------------
1 | # Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
org.apache.taverna.scufl2.api.io.structure.StructureWriter
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/main/resources/META-INF/spring/scufl2-api-context.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
21 |
22 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/java/org/apache/taverna/scufl2/api/TestAbstractRevisioned.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import static org.junit.Assert.*;
24 |
25 | import java.util.UUID;
26 |
27 | import org.apache.taverna.scufl2.api.container.WorkflowBundle;
28 | import org.apache.taverna.scufl2.api.core.Workflow;
29 | import org.apache.taverna.scufl2.api.profiles.Profile;
30 | import org.junit.Test;
31 |
32 |
33 | public class TestAbstractRevisioned {
34 | @Test
35 | public void profileName() throws Exception {
36 | Profile p = new Profile();
37 | UUID uuid = UUID.fromString(p.getName());
38 | assertEquals(4, uuid.version());
39 |
40 | }
41 |
42 | @Test
43 | public void workflow() throws Exception {
44 | Workflow wf = new Workflow();
45 | UUID uuid = UUID.fromString(wf.getName());
46 | assertEquals(4, uuid.version());
47 | }
48 |
49 | @Test
50 | public void workflowBundle() throws Exception {
51 | WorkflowBundle wfBundle = new WorkflowBundle();
52 | UUID uuid = UUID.fromString(wfBundle.getName());
53 | assertEquals(4, uuid.version());
54 | }
55 | }
56 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/java/org/apache/taverna/scufl2/api/TestExampleWorkflow.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.junit.Test;
24 |
25 | public class TestExampleWorkflow extends ExampleWorkflow {
26 |
27 | @Test
28 | public void makeflowBundle() throws Exception {
29 | makeWorkflowBundle();
30 | // TODO: Check fields
31 | }
32 |
33 | }
34 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/java/org/apache/taverna/scufl2/api/annotation/TestAnnotations.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.annotation;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.scufl2.api.annotation.Annotation;
24 | import org.apache.taverna.scufl2.api.container.WorkflowBundle;
25 |
26 | public class TestAnnotations {
27 |
28 |
29 | public void addAnnotation() {
30 | WorkflowBundle wfBundle = new WorkflowBundle();
31 | Annotation ann = new Annotation();
32 | wfBundle.getAnnotations().add(ann);
33 |
34 | }
35 |
36 | }
37 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/java/org/apache/taverna/scufl2/api/common/AllBeansVisitor.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.common;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import java.util.ArrayList;
24 | import java.util.List;
25 |
26 | import org.apache.taverna.scufl2.api.common.Visitor;
27 | import org.apache.taverna.scufl2.api.common.WorkflowBean;
28 | import org.apache.taverna.scufl2.api.common.Visitor.VisitorWithPath;
29 |
30 |
31 | public class AllBeansVisitor extends VisitorWithPath implements Visitor {
32 |
33 | private final List allBeans = new ArrayList();
34 |
35 | @Override
36 | public boolean visit() {
37 | getAllBeans().add(getCurrentNode());
38 | return true;
39 | }
40 |
41 | public List getAllBeans() {
42 | return allBeans;
43 | }
44 |
45 | public static List allBeansFrom(WorkflowBean bean) {
46 | AllBeansVisitor visitor = new AllBeansVisitor();
47 | bean.accept(visitor);
48 | return visitor.getAllBeans();
49 | }
50 |
51 |
52 |
53 | }
54 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/java/org/apache/taverna/scufl2/api/impl/TestNullCompare.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.impl;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import static org.junit.Assert.assertEquals;
24 |
25 | import java.util.Arrays;
26 | import java.util.Collections;
27 | import java.util.List;
28 |
29 | import org.apache.taverna.scufl2.api.impl.NullSafeComparator;
30 | import org.junit.Test;
31 |
32 | public class TestNullCompare {
33 | @Test
34 | public void testNullCompare() throws Exception {
35 | List values = Arrays.asList("c", null, "b", null, "a", "c");
36 | Collections.sort(values, new NullSafeComparator());
37 | assertEquals(Arrays.asList(null, null, "a", "b", "c", "c"), values);
38 | }
39 | }
40 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/java/org/apache/taverna/scufl2/api/io/TestResources.java:
--------------------------------------------------------------------------------
1 | package org.apache.taverna.scufl2.api.io;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import static org.junit.Assert.assertTrue;
24 |
25 | import org.apache.taverna.scufl2.api.ExampleWorkflow;
26 | import org.apache.taverna.scufl2.api.container.WorkflowBundle;
27 | import org.apache.taverna.scufl2.ucfpackage.UCFPackage;
28 | import org.junit.Before;
29 | import org.junit.Test;
30 |
31 |
32 | public class TestResources {
33 |
34 | private WorkflowBundle wb;
35 | ExampleWorkflow exampleWorkflow = new ExampleWorkflow();
36 |
37 | @Test
38 | public void emptyResources() throws Exception {
39 | UCFPackage resources = wb.getResources();
40 | assertTrue(resources.listResources().isEmpty());
41 | }
42 |
43 | @Before
44 | public void makeBundle() {
45 | wb = exampleWorkflow.makeWorkflowBundle();
46 | }
47 |
48 | @Test
49 | public void singleFile() throws Exception {
50 | UCFPackage resources = wb.getResources();
51 | resources.addResource("Hello there", "hello.txt", "text/plain");
52 | assertTrue(resources.listResources().containsKey("hello.txt"));
53 | }
54 | }
55 |
--------------------------------------------------------------------------------
/taverna-scufl2-api/src/test/resources/org/apache/taverna/scufl2/api/io/HelloWorld.txt:
--------------------------------------------------------------------------------
1 | WorkflowBundle 'HelloWorld'
2 | MainWorkflow 'HelloWorld'
3 | Workflow 'HelloWorld'
4 | In 'yourName'
5 | Out 'results'
6 | Processor 'Hello'
7 | In 'name'
8 | Out 'greeting'
9 | Processor 'wait4me'
10 | Links
11 | 'Hello:greeting' -> 'results'
12 | 'yourName' -> 'Hello:name'
13 | 'yourName' -> 'results'
14 | Controls
15 | block 'Hello' until 'wait4me' finish
16 | MainProfile 'tavernaWorkbench'
17 | Profile 'tavernaServer'
18 | Activity 'HelloScript'
19 | Type
20 | In 'personName'
21 | Out 'hello'
22 | ProcessorBinding 'Hello'
23 | Activity 'HelloScript'
24 | Processor 'HelloWorld:Hello'
25 | InputPortBindings
26 | 'name' -> 'personName'
27 | OutputPortBindings
28 | 'hello' -> 'greeting'
29 | Configuration 'Hello'
30 | Type
31 | Configures 'activity/HelloScript'
32 | {"script":"hello = \"Hello, \" + personName;\nSystem.out.println(\"Server says: \" + hello);"}
33 | Profile 'tavernaWorkbench'
34 | Activity 'HelloScript'
35 | Type
36 | In 'personName'
37 | Out 'hello'
38 | ProcessorBinding 'Hello'
39 | Activity 'HelloScript'
40 | Processor 'HelloWorld:Hello'
41 | InputPortBindings
42 | 'name' -> 'personName'
43 | OutputPortBindings
44 | 'hello' -> 'greeting'
45 | Configuration 'Hello'
46 | Type
47 | Configures 'activity/HelloScript'
48 | {"script":"hello = \"Hello, \" + personName;\nJOptionPane.showMessageDialog(null, hello);"}
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/InputPort.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Licensed to the Apache Software Foundation (ASF) under one
3 | * or more contributor license agreements. See the NOTICE file
4 | * distributed with this work for additional information
5 | * regarding copyright ownership. The ASF licenses this file
6 | * to you under the Apache License, Version 2.0 (the
7 | * "License"); you may not use this file except in compliance
8 | * with the License. You may obtain a copy of the License at
9 | *
10 | * http://www.apache.org/licenses/LICENSE-2.0
11 | *
12 | * Unless required by applicable law or agreed to in writing,
13 | * software distributed under the License is distributed on an
14 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
15 | * KIND, either express or implied. See the License for the
16 | * specific language governing permissions and limitations
17 | * under the License.
18 | */
19 |
20 | package org.apache.taverna.scufl2.cwl.components;
21 |
22 | public class InputPort {
23 |
24 | private String name;
25 |
26 | private String source;
27 |
28 | public InputPort() {
29 | this.name = "";
30 | this.source = "";
31 | }
32 |
33 | public InputPort(String name, String source) {
34 | this.name = name;
35 | this.source = source;
36 | }
37 |
38 | public String getName() {
39 | return this.name;
40 | }
41 |
42 | public void setName(String name) {
43 | this.name = name;
44 | }
45 |
46 | public String getSource() {
47 | return source;
48 | }
49 |
50 | public void setSource(String source) {
51 | this.source = source;
52 | }
53 | }
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/OutputPort.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Licensed to the Apache Software Foundation (ASF) under one
3 | * or more contributor license agreements. See the NOTICE file
4 | * distributed with this work for additional information
5 | * regarding copyright ownership. The ASF licenses this file
6 | * to you under the Apache License, Version 2.0 (the
7 | * "License"); you may not use this file except in compliance
8 | * with the License. You may obtain a copy of the License at
9 | *
10 | * http://www.apache.org/licenses/LICENSE-2.0
11 | *
12 | * Unless required by applicable law or agreed to in writing,
13 | * software distributed under the License is distributed on an
14 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
15 | * KIND, either express or implied. See the License for the
16 | * specific language governing permissions and limitations
17 | * under the License.
18 | */
19 |
20 | package org.apache.taverna.scufl2.cwl.components;
21 |
22 | public class OutputPort {
23 |
24 | private String name;
25 |
26 | public OutputPort() {
27 | this.name = "";
28 | }
29 |
30 | public OutputPort(String name) {
31 | this.name = name;
32 | }
33 |
34 | public String getName() {
35 | return this.name;
36 | }
37 |
38 | public void setName(String name) {
39 | this.name = name;
40 | }
41 | }
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Reference.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Licensed to the Apache Software Foundation (ASF) under one
3 | * or more contributor license agreements. See the NOTICE file
4 | * distributed with this work for additional information
5 | * regarding copyright ownership. The ASF licenses this file
6 | * to you under the Apache License, Version 2.0 (the
7 | * "License"); you may not use this file except in compliance
8 | * with the License. You may obtain a copy of the License at
9 | *
10 | * http://www.apache.org/licenses/LICENSE-2.0
11 | *
12 | * Unless required by applicable law or agreed to in writing,
13 | * software distributed under the License is distributed on an
14 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
15 | * KIND, either express or implied. See the License for the
16 | * specific language governing permissions and limitations
17 | * under the License.
18 | */
19 |
20 | package org.apache.taverna.scufl2.cwl.components;
21 |
22 |
23 | public class Reference extends Process {
24 |
25 | private String source;
26 |
27 | public Reference() {
28 | source = "";
29 | name = "";
30 | }
31 |
32 | public Reference(String src) {
33 | this.source = src;
34 | this.name = "";
35 | }
36 |
37 | public void parse() {
38 | // TODO: read source file and parse nested workflow
39 | }
40 |
41 | public String toString() {
42 | return source;
43 | }
44 |
45 | public String getSource() {
46 | return source;
47 | }
48 | }
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleReader:
--------------------------------------------------------------------------------
1 | org.apache.taverna.scufl2.cwl.CWLReader
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/main/resources/hello_world.cwl:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env cwl-runner
2 |
3 | # Licensed to the Apache Software Foundation (ASF) under one
4 | # or more contributor license agreements. See the NOTICE file
5 | # distributed with this work for additional information
6 | # regarding copyright ownership. The ASF licenses this file
7 | # to you under the Apache License, Version 2.0 (the
8 | # "License"); you may not use this file except in compliance
9 | # with the License. You may obtain a copy of the License at
10 | #
11 | # http://www.apache.org/licenses/LICENSE-2.0
12 | #
13 | # Unless required by applicable law or agreed to in writing,
14 | # software distributed under the License is distributed on an
15 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
16 | # KIND, either express or implied. See the License for the
17 | # specific language governing permissions and limitations
18 | # under the License.
19 |
20 | cwlVersion: v1.0
21 | class: Workflow
22 |
23 | inputs:
24 | name: string
25 |
26 | outputs:
27 | output1: string
28 |
29 | steps:
30 | step1:
31 | run: example.cwl
32 |
33 | inputs:
34 | - id: text
35 | source: "#x/name"
36 |
37 | outputs: []
38 |
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/test/resources/1st-tool.cwl:
--------------------------------------------------------------------------------
1 | # Licensed to the Apache Software Foundation (ASF) under one
2 | # or more contributor license agreements. See the NOTICE file
3 | # distributed with this work for additional information
4 | # regarding copyright ownership. The ASF licenses this file
5 | # to you under the Apache License, Version 2.0 (the
6 | # "License"); you may not use this file except in compliance
7 | # with the License. You may obtain a copy of the License at
8 | #
9 | # http://www.apache.org/licenses/LICENSE-2.0
10 | #
11 | # Unless required by applicable law or agreed to in writing,
12 | # software distributed under the License is distributed on an
13 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
14 | # KIND, either express or implied. See the License for the
15 | # specific language governing permissions and limitations
16 | # under the License.
17 | cwlVersion: v1.0
18 | class: CommandLineTool
19 | baseCommand: echo
20 | inputs:
21 | message:
22 | type: string
23 |
24 | inputBinding:
25 | position: 1
26 | outputs: []
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/test/resources/hello_world.cwl:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env cwl-runner
2 |
3 | # Licensed to the Apache Software Foundation (ASF) under one
4 | # or more contributor license agreements. See the NOTICE file
5 | # distributed with this work for additional information
6 | # regarding copyright ownership. The ASF licenses this file
7 | # to you under the Apache License, Version 2.0 (the
8 | # "License"); you may not use this file except in compliance
9 | # with the License. You may obtain a copy of the License at
10 | #
11 | # http://www.apache.org/licenses/LICENSE-2.0
12 | #
13 | # Unless required by applicable law or agreed to in writing,
14 | # software distributed under the License is distributed on an
15 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
16 | # KIND, either express or implied. See the License for the
17 | # specific language governing permissions and limitations
18 | # under the License.
19 |
20 | cwlVersion: v1.0
21 | class: Workflow
22 |
23 | inputs:
24 | name: string
25 |
26 | outputs:
27 | output1: string
28 |
29 | steps:
30 | step1:
31 | run: example.cwl
32 |
33 | inputs:
34 | - id: text
35 | source: "name"
36 |
37 | outputs: []
38 |
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/test/resources/int_input.cwl:
--------------------------------------------------------------------------------
1 | # Licensed to the Apache Software Foundation (ASF) under one
2 | # or more contributor license agreements. See the NOTICE file
3 | # distributed with this work for additional information
4 | # regarding copyright ownership. The ASF licenses this file
5 | # to you under the Apache License, Version 2.0 (the
6 | # "License"); you may not use this file except in compliance
7 | # with the License. You may obtain a copy of the License at
8 | #
9 | # http://www.apache.org/licenses/LICENSE-2.0
10 | #
11 | # Unless required by applicable law or agreed to in writing,
12 | # software distributed under the License is distributed on an
13 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
14 | # KIND, either express or implied. See the License for the
15 | # specific language governing permissions and limitations
16 | # under the License.
17 | inputs:
18 | example_int:
19 | type: int
20 | inputBinding:
21 | position: 2
22 | prefix: -i
23 |
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/test/resources/simple_string_input.cwl:
--------------------------------------------------------------------------------
1 | # Licensed to the Apache Software Foundation (ASF) under one
2 | # or more contributor license agreements. See the NOTICE file
3 | # distributed with this work for additional information
4 | # regarding copyright ownership. The ASF licenses this file
5 | # to you under the Apache License, Version 2.0 (the
6 | # "License"); you may not use this file except in compliance
7 | # with the License. You may obtain a copy of the License at
8 | #
9 | # http://www.apache.org/licenses/LICENSE-2.0
10 | #
11 | # Unless required by applicable law or agreed to in writing,
12 | # software distributed under the License is distributed on an
13 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
14 | # KIND, either express or implied. See the License for the
15 | # specific language governing permissions and limitations
16 | # under the License.
17 | inputs:
18 | example_string: string
19 | steps:
20 | step1:
21 | run: run1
--------------------------------------------------------------------------------
/taverna-scufl2-cwl/src/test/resources/workflow_with_command.cwl:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env cwl-runner
2 |
3 | # Licensed to the Apache Software Foundation (ASF) under one
4 | # or more contributor license agreements. See the NOTICE file
5 | # distributed with this work for additional information
6 | # regarding copyright ownership. The ASF licenses this file
7 | # to you under the Apache License, Version 2.0 (the
8 | # "License"); you may not use this file except in compliance
9 | # with the License. You may obtain a copy of the License at
10 | #
11 | # http://www.apache.org/licenses/LICENSE-2.0
12 | #
13 | # Unless required by applicable law or agreed to in writing,
14 | # software distributed under the License is distributed on an
15 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
16 | # KIND, either express or implied. See the License for the
17 | # specific language governing permissions and limitations
18 | # under the License.
19 |
20 | cwlVersion: v1.0
21 | class: Workflow
22 |
23 | inputs:
24 | name: string
25 |
26 | outputs: []
27 |
28 | steps:
29 | step1:
30 | run:
31 | class: CommandLineTool
32 | baseCommand: echo
33 | inputs:
34 | message:
35 | type: string
36 |
37 | inputBinding:
38 | position: 1
39 | outputs: []
40 |
41 | inputs:
42 | - id: text
43 | source: "#x/name"
44 |
45 | outputs: []
46 |
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/taverna-scufl2-cwl/src/test/resources/workflow_with_workflow.cwl:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env cwl-runner
2 |
3 | # Licensed to the Apache Software Foundation (ASF) under one
4 | # or more contributor license agreements. See the NOTICE file
5 | # distributed with this work for additional information
6 | # regarding copyright ownership. The ASF licenses this file
7 | # to you under the Apache License, Version 2.0 (the
8 | # "License"); you may not use this file except in compliance
9 | # with the License. You may obtain a copy of the License at
10 | #
11 | # http://www.apache.org/licenses/LICENSE-2.0
12 | #
13 | # Unless required by applicable law or agreed to in writing,
14 | # software distributed under the License is distributed on an
15 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
16 | # KIND, either express or implied. See the License for the
17 | # specific language governing permissions and limitations
18 | # under the License.
19 | cwlVersion: v1.0
20 | class: Workflow
21 |
22 | inputs:
23 | message: string
24 |
25 | outputs:
26 | download:
27 | type: File
28 | outputSource: "curl"
29 |
30 | steps:
31 | step1:
32 | run:
33 | class: Workflow
34 | inputs:
35 | name: string
36 | outputs:
37 | output1: string
38 | steps:
39 | step2:
40 | run: example.cwl
41 | inputs:
42 | - id: text
43 | source: "name"
44 | outputs: []
45 | in:
46 | text: message
47 |
48 | out: [curl]
49 |
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/taverna-scufl2-examples/examples/helloanyone.wfbundle:
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/taverna-scufl2-examples/examples/helloworld.json:
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1 | {
2 | "@context" : [ "https://w3id.org/scufl2/context", {
3 | "@base" : "http://ns.taverna.org.uk/2010/workflowBundle/8781d5f4-d0ba-48a8-a1d1-14281bd8a917/"
4 | } ],
5 | "id" : "http://ns.taverna.org.uk/2010/workflowBundle/8781d5f4-d0ba-48a8-a1d1-14281bd8a917/",
6 | "workflow" : {
7 | "id" : "workflow/Hello_World/",
8 | "name" : "Hello_World",
9 | "revisions" : [ {
10 | "id" : "http://ns.taverna.org.uk/2010/workflow/8781d5f4-d0ba-48a8-a1d1-14281bd8a917/",
11 | "generatedAtTime" : "2012-01-03T15:12:21Z"
12 | } ],
13 | "inputs" : [ ],
14 | "outputs" : [ {
15 | "name" : "greeting",
16 | "id" : "workflow/Hello_World/out/greeting"
17 | } ],
18 | "processors" : [ {
19 | "id" : "workflow/Hello_World/processor/hello/",
20 | "name" : "hello",
21 | "inputs" : [ ],
22 | "outputs" : [ {
23 | "name" : "value",
24 | "id" : "workflow/Hello_World/processor/hello/out/value",
25 | "depth" : 0
26 | } ]
27 | } ],
28 | "datalinks" : [ {
29 | "receivesFrom" : "workflow/Hello_World/processor/hello/out/value",
30 | "sendsTo" : "workflow/Hello_World/out/greeting"
31 | } ],
32 | "controllinks" : [ ]
33 | },
34 | "profile" : {
35 | "id" : "profile/taverna-2.2.0/"
36 | }
37 | }
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/taverna-scufl2-examples/examples/helloworld.wfbundle:
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/taverna-scufl2-examples/src/main/resources/context.json:
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1 | {
2 | "@context" : {
3 | "foaf": "http://xmlns.com/foaf/0.1/",
4 | "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
5 | "prov": "http://www.w3.org.ns/prov#",
6 | "wfdesc": "http://purl.org/wf4ever/wfdesc#",
7 | "scufl2": "http://ns.taverna.org.uk/2010/scufl2#",
8 |
9 | "id": "@id",
10 | "name": "rdfs:label",
11 | "revisions": "prov:alternateOf",
12 | "processors": "wfdesc:hasSubProcess",
13 | "inputs": "wfdesc:hasInput",
14 | "outputs": "wfdesc:hasOutput",
15 | "depth": "scufl2:depth",
16 | "granularDepth": "scufl2:granularDepth",
17 | "workflow": "foaf:primaryTopic",
18 | "generatedAtTime": "prov:generatedAtTime"
19 | }
20 | }
21 |
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/taverna-scufl2-examples/src/test/resources/workflows/wfbundle/as.wfbundle:
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/taverna-scufl2-examples/src/test/resources/workflows/wfbundle/defaultActivitiesTaverna2.wfbundle:
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/taverna-scufl2-integration-tests/src/test/resources/clone-error.wfbundle:
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/taverna-scufl2-integration-tests/src/test/resources/t172starterpacklist:
--------------------------------------------------------------------------------
1 | #
2 | # Licensed to the Apache Software Foundation (ASF) under one or more
3 | # contributor license agreements. See the NOTICE file distributed with
4 | # this work for additional information regarding copyright ownership.
5 | # The ASF licenses this file to You under the Apache License, Version 2.0
6 | # (the "License"); you may not use this file except in compliance with
7 | # the License. You may obtain a copy of the License at
8 | #
9 | # http://www.apache.org/licenses/LICENSE-2.0
10 | #
11 | # Unless required by applicable law or agreed to in writing, software
12 | # distributed under the License is distributed on an "AS IS" BASIS,
13 | # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14 | # See the License for the specific language governing permissions and
15 | # limitations under the License.
16 | http://www.myexperiment.org/workflows/157/download/example_of_a_conditional_execution_workflow_7882.xml?version=1
17 |
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/taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/ScuflExtensionParser.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.translator.scufl;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import java.net.URI;
28 | import java.util.List;
29 |
30 | /**
31 | * @author alanrw
32 | */
33 | public interface ScuflExtensionParser {
34 | void setParserState(ParserState state);
35 |
36 | ParserState getParserState();
37 |
38 | List getAdditionalSchemas();
39 |
40 | void parseScuflObject(Object o);
41 |
42 | boolean canHandle(Class c);
43 | }
44 |
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/taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/AbstractExtensionParser.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.translator.scufl.processorelement;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import org.apache.taverna.scufl2.translator.scufl.ParserState;
28 | import org.apache.taverna.scufl2.translator.scufl.ScuflExtensionParser;
29 |
30 | /**
31 | * @author alanrw
32 | */
33 | public abstract class AbstractExtensionParser implements ScuflExtensionParser {
34 | private ParserState parserState;
35 |
36 | /**
37 | * @return the parserState
38 | */
39 | @Override
40 | public ParserState getParserState() {
41 | return parserState;
42 | }
43 |
44 | /**
45 | * @param parserState the parserState to set
46 | */
47 | @Override
48 | public void setParserState(ParserState parserState) {
49 | this.parserState = parserState;
50 | }
51 | }
52 |
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/taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/AbstractProcessorExtensionParser.java:
--------------------------------------------------------------------------------
1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.translator.scufl.processorelement;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import java.net.URI;
28 | import java.util.Collections;
29 | import java.util.List;
30 |
31 | /**
32 | * @author alanrw
33 | */
34 | public class AbstractProcessorExtensionParser extends AbstractExtensionParser {
35 | @Override
36 | public boolean canHandle(Class c) {
37 | return c.equals(org.apache.taverna.scufl2.xml.scufl.jaxb.AbstractprocessorType.class);
38 | }
39 |
40 | @Override
41 | public List getAdditionalSchemas() {
42 | return Collections.emptyList();
43 | }
44 |
45 | @Override
46 | public void parseScuflObject(Object o) {
47 | System.err.println(this.getClass() + " is not yet implemented");
48 | }
49 | }
50 |
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/taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/WsdlExtensionParser.java:
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1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.translator.scufl.processorelement;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | import java.net.URI;
28 | import java.net.URISyntaxException;
29 | import java.net.URL;
30 | import java.util.Arrays;
31 | import java.util.List;
32 |
33 | /**
34 | * @author alanrw
35 | */
36 | public class WsdlExtensionParser extends AbstractExtensionParser {
37 | private static final String WSDL_XSD = "/uk/org/taverna/scufl2/translator/scufl/xsd/scufl-wsdl.xsd";
38 |
39 | @Override
40 | public boolean canHandle(Class c) {
41 | return c.equals(org.apache.taverna.scufl2.xml.scufl.jaxb.WsdlType.class);
42 | }
43 |
44 | @Override
45 | public List getAdditionalSchemas() {
46 | URL wsdlXsd = getClass().getResource(WSDL_XSD);
47 | try {
48 | return Arrays.asList(wsdlXsd.toURI());
49 | } catch (URISyntaxException e) {
50 | throw new IllegalStateException("Can't find WSDL schema " + wsdlXsd);
51 | }
52 | }
53 |
54 | @Override
55 | public void parseScuflObject(Object o) {
56 | // TODO write to log?
57 | System.err.println(this.getClass() + " is not yet implemented");
58 | }
59 | }
60 |
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/taverna-scufl2-scufl/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleReader:
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1 | org.apache.taverna.scufl2.translator.scufl.ScuflReader
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/taverna-scufl2-scufl/src/main/resources/META-INF/services/org.apache.taverna.scufl2.translator.scufl.ScuflExtensionParser:
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1 | org.apache.taverna.scufl2.translator.scufl.processorelement.AbstractProcessorExtensionParser
2 | org.apache.taverna.scufl2.translator.scufl.processorelement.ApiConsumerExtensionParser
3 | org.apache.taverna.scufl2.translator.scufl.processorelement.BeanshellExtensionParser
4 | org.apache.taverna.scufl2.translator.scufl.processorelement.BiomartExtensionParser
5 | org.apache.taverna.scufl2.translator.scufl.processorelement.BiomobyExtensionParser
6 | org.apache.taverna.scufl2.translator.scufl.processorelement.LocalExtensionParser
7 | org.apache.taverna.scufl2.translator.scufl.processorelement.RshellExtensionParser
8 | org.apache.taverna.scufl2.translator.scufl.processorelement.SoaplabExtensionParser
9 | org.apache.taverna.scufl2.translator.scufl.processorelement.StringConstantExtensionParser
10 | org.apache.taverna.scufl2.translator.scufl.processorelement.WsdlExtensionParser
11 |
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/taverna-scufl2-scufl/src/main/resources/org/apache/taverna/scufl2/translator/scufl/xsd/scufl-biomart.xsd:
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/taverna-scufl2-scufl/src/main/resources/org/apache/taverna/scufl2/translator/scufl/xsd/scufl-notification.xsd:
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/taverna-scufl2-scufl/src/main/resources/org/apache/taverna/scufl2/translator/scufl/xsd/scufl-soaplab.xsd:
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/taverna-scufl2-scufl/src/main/resources/org/apache/taverna/scufl2/translator/scufl/xsd/scufl-stringconstant.xsd:
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/taverna-scufl2-scufl/src/test/java/org/apache/taverna/scufl2/translator/scufl2/TestStarterPack.java:
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1 | /**
2 | *
3 | */
4 | package org.apache.taverna.scufl2.translator.scufl2;
5 | /*
6 | *
7 | * Licensed to the Apache Software Foundation (ASF) under one
8 | * or more contributor license agreements. See the NOTICE file
9 | * distributed with this work for additional information
10 | * regarding copyright ownership. The ASF licenses this file
11 | * to you under the Apache License, Version 2.0 (the
12 | * "License"); you may not use this file except in compliance
13 | * with the License. You may obtain a copy of the License at
14 | *
15 | * http://www.apache.org/licenses/LICENSE-2.0
16 | *
17 | * Unless required by applicable law or agreed to in writing,
18 | * software distributed under the License is distributed on an
19 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
20 | * KIND, either express or implied. See the License for the
21 | * specific language governing permissions and limitations
22 | * under the License.
23 | *
24 | */
25 |
26 |
27 | /**
28 | * @author alanrw
29 | *
30 | */
31 | public class TestStarterPack {
32 |
33 | }
34 |
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/taverna-scufl2-t2flow/.gitignore:
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1 | target
2 | .settings
3 | .classpath
4 | .project
5 |
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/taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/T2Parser.java:
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1 | package org.apache.taverna.scufl2.translator.t2flow;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import java.net.URI;
25 | import java.util.List;
26 |
27 | import org.apache.taverna.scufl2.api.configurations.Configuration;
28 | import org.apache.taverna.scufl2.api.io.ReaderException;
29 |
30 | import org.apache.taverna.scufl2.xml.t2flow.jaxb.ConfigBean;
31 |
32 | public interface T2Parser {
33 | boolean canHandlePlugin(URI pluginURI);
34 |
35 | URI mapT2flowRavenIdToScufl2URI(URI t2flowActivity);
36 |
37 | Configuration parseConfiguration(T2FlowParser t2FlowParser,
38 | ConfigBean configBean, ParserState parserState)
39 | throws ReaderException;
40 |
41 | List getAdditionalSchemas();
42 | }
43 |
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/taverna-scufl2-t2flow/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleReader:
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1 | org.apache.taverna.scufl2.translator.t2flow.T2FlowReader
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/taverna-scufl2-t2flow/src/main/resources/META-INF/services/org.apache.taverna.scufl2.translator.t2flow.T2Parser:
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1 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.DataflowActivityParser
2 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.BeanshellActivityParser
3 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.RshellActivityParser
4 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.SpreadsheetActivityParser
5 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.StringConstantActivityParser
6 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.BiomobyActivityParser
7 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.SoaplabActivityParser
8 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.WSDLActivityParser
9 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.WSDLXMLSplitterParser
10 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.BiomartActivityParser
11 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.ApiConsomerActivityParser
12 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.InteractionActivityParser
13 | org.apache.taverna.scufl2.translator.t2flow.defaultactivities.ComponentActivityParser
14 |
15 | org.apache.taverna.scufl2.translator.t2flow.t23activities.ExternalToolActivityParser
16 | org.apache.taverna.scufl2.translator.t2flow.t23activities.RESTActivityParser
17 | org.apache.taverna.scufl2.translator.t2flow.t23activities.XPathActivityParser
18 |
19 | org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.ParallelizeParser
20 | org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.ErrorBounceParser
21 | org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.FailoverParser
22 | org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.RetryParser
23 | org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.LoopParser
24 | org.apache.taverna.scufl2.translator.t2flow.defaultdispatchstack.InvokeParser
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/taverna-scufl2-ucfpackage/.gitignore:
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1 | /target
2 |
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/taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/manifest/Algorithm.java:
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1 | /************************************************************************
2 | *
3 | * DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER
4 | *
5 | * Copyright 2008, 2010 Oracle and/or its affiliates. All rights reserved.
6 | *
7 | * Use is subject to license terms.
8 | *
9 | * Licensed under the Apache License, Version 2.0 (the "License"); you may not
10 | * use this file except in compliance with the License. You may obtain a copy
11 | * of the License at http://www.apache.org/licenses/LICENSE-2.0. You can also
12 | * obtain a copy of the License at http://odftoolkit.org/docs/license.txt
13 | *
14 | * Unless required by applicable law or agreed to in writing, software
15 | * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
16 | * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
17 | *
18 | * See the License for the specific language governing permissions and
19 | * limitations under the License.
20 | *
21 | ************************************************************************/
22 | /* This file is derived from ODFDOM 0.8.6, and
23 | * has been modified for Apache Taverna.
24 | * (c) 2010-2014 University of Manchester
25 | * (c) 2015 The Apache Software Foundation
26 | */
27 | package org.apache.taverna.scufl2.ucfpackage.impl.odfdom.pkg.manifest;
28 |
29 | public class Algorithm {
30 | private String name;
31 | private String initializationVector;
32 |
33 | public Algorithm() {
34 | }
35 |
36 | public Algorithm(String name, String initializationVector) {
37 | this.name = name;
38 | this.initializationVector = initializationVector;
39 | }
40 |
41 | public void setName(String name) {
42 | this.name = name;
43 | }
44 |
45 | public String getName() {
46 | return name;
47 | }
48 |
49 | public void setInitializationVector(String initializationVector) {
50 | this.initializationVector = initializationVector;
51 | }
52 |
53 | public String getInitializationVector() {
54 | return initializationVector;
55 | }
56 | }
57 |
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/taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/impl/NamespacePrefixMapperJAXB_RI.java:
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1 | package org.apache.taverna.scufl2.rdfxml.impl;
2 | /*
3 | *
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | *
21 | */
22 |
23 |
24 | import com.sun.xml.bind.marshaller.NamespacePrefixMapper;
25 |
26 | public class NamespacePrefixMapperJAXB_RI extends NamespacePrefixMapper {
27 | @Override
28 | public String getPreferredPrefix(String namespaceUri, String suggestion,
29 | boolean requirePrefix) {
30 | switch (namespaceUri) {
31 | case "http://www.w3.org/2001/XMLSchema-instance":
32 | return "xsi";
33 | case "http://ns.taverna.org.uk/2010/scufl2#":
34 | return ""; // default
35 | case "http://www.w3.org/1999/02/22-rdf-syntax-ns#":
36 | return "rdf";
37 | case "http://www.w3.org/2000/01/rdf-schema#":
38 | return "rdfs";
39 | case "http://purl.org/dc/elements/1.1/":
40 | return "dc";
41 | case "http://purl.org/dc/terms/":
42 | return "dcterms";
43 | case "http://www.w3.org/2002/07/owl#":
44 | return "owl";
45 | default:
46 | return suggestion;
47 | }
48 | }
49 |
50 | @Override
51 | public String[] getPreDeclaredNamespaceUris() {
52 | return new String[] {};
53 | }
54 | }
55 |
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/taverna-scufl2-wfbundle/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleReader:
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1 | org.apache.taverna.scufl2.rdfxml.RDFXMLReader
2 |
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/taverna-scufl2-wfbundle/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleWriter:
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1 | org.apache.taverna.scufl2.rdfxml.RDFXMLWriter
2 |
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/taverna-scufl2-wfbundle/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/META-INF/container.xml:
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/taverna-scufl2-wfbundle/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/NOTICE:
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1 | Apache Taverna Language
2 | Copyright 2014-2018 The Apache Software Foundation
3 |
4 | This product includes software developed at
5 | The Apache Software Foundation (http://www.apache.org/).
6 |
7 | Portions of this software were originally based on the following:
8 | - Copyright 2010-2014 University of Manchester, UK
9 | These have been licensed to the Apache Software Foundation under a software grant.
10 |
11 | -----------------------------------------------------------------------------------
12 |
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/taverna-scufl2-wfbundle/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/annotation/workflowBundle.rdf:
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1 |
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23 |
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25 |
26 |
27 |
28 |
32 |
33 |
34 | 2010-07-29T14:12:14+01:00
35 | 2010-07-29T14:12:14+01:00
36 | Stian Soiland-Reyes
37 | An example workflow to illustrate SCUFL2
38 |
39 |
40 |
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/taverna-scufl2-wfbundle/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/mimetype:
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/taverna-scufl2-wfbundle/src/test/resources/org/apache/taverna/scufl2/rdfxml/update-bundle.sh:
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1 | #!/bin/sh
2 | #
3 | #
4 | # Licensed to the Apache Software Foundation (ASF) under one
5 | # or more contributor license agreements. See the NOTICE file
6 | # distributed with this work for additional information
7 | # regarding copyright ownership. The ASF licenses this file
8 | # to you under the Apache License, Version 2.0 (the
9 | # "License"); you may not use this file except in compliance
10 | # with the License. You may obtain a copy of the License at
11 | #
12 | # http://www.apache.org/licenses/LICENSE-2.0
13 | #
14 | # Unless required by applicable law or agreed to in writing,
15 | # software distributed under the License is distributed on an
16 | # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | # KIND, either express or implied. See the License for the
18 | # specific language governing permissions and limitations
19 | # under the License.
20 | #
21 | #
22 | set -e
23 | rm example.wfbundle
24 | cd example
25 | zip -0 -X ../example.wfbundle mimetype
26 | zip -r ../example.wfbundle . -x mimetype
27 |
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/taverna-scufl2-wfdesc/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleReader:
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1 | org.apache.taverna.scufl2.wfdesc.WfdescReader
2 |
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/taverna-scufl2-wfdesc/src/main/resources/META-INF/services/org.apache.taverna.scufl2.api.io.WorkflowBundleWriter:
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2 |
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/taverna-tavlang-tool/.gitignore:
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1 | dependency-reduced-pom.xml
2 |
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/taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/TavernaCommandline.java:
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1 | package org.apache.taverna.tavlang;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 | public class TavernaCommandline {
23 |
24 | public static void main(String args[]){
25 | CommandLineTool tool = new CommandLineTool();
26 | tool.parse(args);
27 |
28 | }
29 | }
30 |
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/taverna-tavlang-tool/src/test/java/.gitignore:
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/taverna-tavlang-tool/src/test/java/org/apache/taverna/tavlang/test/CommandLineTest.java:
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1 | package org.apache.taverna.tavlang.test;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import org.apache.taverna.tavlang.CommandLineTool;
24 | import org.junit.Assert;
25 | import org.junit.Test;
26 |
27 | public class CommandLineTest {
28 | CommandLineTool commandLineTool = new CommandLineTool();
29 |
30 | @Test
31 | public void testHelp(){
32 | commandLineTool.parse();
33 | commandLineTool.parse("version");
34 | commandLineTool.parse("help");
35 | commandLineTool.parse("help", "convert");
36 | commandLineTool.parse("help", "inspect");
37 | commandLineTool.parse("help", "validate");
38 | commandLineTool.parse("help", "help");
39 | }
40 |
41 |
42 |
43 | }
44 |
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/taverna-tavlang-tool/src/test/java/org/apache/taverna/tavlang/test/TestConvert.java:
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1 | package org.apache.taverna.tavlang.test;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 | import static org.junit.Assert.*;
23 |
24 | import org.junit.Test;
25 |
26 | public class TestConvert{
27 |
28 | @Test
29 | public void testConvertS() {
30 | // fail("Not yet implemented");
31 |
32 | }
33 |
34 | }
35 |
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/taverna-tavlang-tool/src/test/java/org/apache/taverna/tavlang/test/TestStats.java:
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1 | package org.apache.taverna.tavlang.test;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import static org.junit.Assert.*;
24 |
25 | import org.junit.Test;
26 |
27 | public class TestStats {
28 |
29 | @Test
30 | public void test() {
31 | // fail("Not yet implemented");
32 | }
33 |
34 | }
35 |
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/taverna-tavlang-tool/src/test/java/org/apache/taverna/tavlang/test/TestValidate.java:
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1 | package org.apache.taverna.tavlang.test;
2 |
3 | /*
4 | * Licensed to the Apache Software Foundation (ASF) under one
5 | * or more contributor license agreements. See the NOTICE file
6 | * distributed with this work for additional information
7 | * regarding copyright ownership. The ASF licenses this file
8 | * to you under the Apache License, Version 2.0 (the
9 | * "License"); you may not use this file except in compliance
10 | * with the License. You may obtain a copy of the License at
11 | *
12 | * http://www.apache.org/licenses/LICENSE-2.0
13 | *
14 | * Unless required by applicable law or agreed to in writing,
15 | * software distributed under the License is distributed on an
16 | * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
17 | * KIND, either express or implied. See the License for the
18 | * specific language governing permissions and limitations
19 | * under the License.
20 | */
21 |
22 |
23 | import static org.junit.Assert.*;
24 |
25 | import java.awt.List;
26 | import java.util.ArrayList;
27 |
28 | import org.apache.taverna.robundle.Bundle;
29 | import org.apache.taverna.tavlang.tools.validate.Validate;
30 | import org.junit.Assert;
31 | import org.junit.Test;
32 |
33 | import com.google.common.collect.Lists;
34 |
35 | public class TestValidate {
36 |
37 |
38 |
39 | @Test
40 | public void test() {
41 | ArrayList list = Lists.newArrayList();
42 | list.add("src/test/resources/workflows/t2flow/as.t2flow");
43 | Validate val = new Validate(list, null, false);
44 |
45 | assertEquals(false, val.getCheck());
46 |
47 | }
48 |
49 | }
50 |
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/taverna-tavlang-tool/src/test/resources/.gitignore:
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https://raw.githubusercontent.com/apache/incubator-taverna-language/1a823c548486dec1c44a8ffc9cba795f823d382b/taverna-tavlang-tool/src/test/resources/.gitignore
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