├── .flake8 ├── .github ├── ISSUE_TEMPLATE │ ├── bug.md │ └── feature.md ├── pull_request_template.md └── workflows │ ├── delete-preview-docs.yml │ ├── documentation.yml │ ├── release.yml │ ├── test-build.yml │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CITATION.cff ├── LICENSE ├── README.md ├── changelog.md ├── contributing.md ├── demo ├── app.py └── requirements.txt ├── docs ├── advanced-tutorials │ ├── fastapi.md │ ├── index.md │ └── word-vectors.md ├── assets │ ├── fragments │ │ ├── aids-examples.md │ │ ├── alcohol-examples.md │ │ ├── cerebrovascular-accident-examples.md │ │ ├── ckd-examples.md │ │ ├── congestive-heart-failure-examples.md │ │ ├── connective-tissue-disease-examples.md │ │ ├── copd-examples.md │ │ ├── dementia-examples.md │ │ ├── diabetes-examples.md │ │ ├── hemiplegia-examples.md │ │ ├── leukemia-examples.md │ │ ├── liver-disease-examples.md │ │ ├── lymphoma-examples.md │ │ ├── myocardial-infarction-examples.md │ │ ├── peptic-ulcer-disease-examples.md │ │ ├── peripheral-vascular-disease-examples.md │ │ ├── solid-tumor-examples.md │ │ └── tobacco-examples.md │ ├── images │ │ ├── class_span_linker.png │ │ ├── edsnlp-ner.svg │ │ ├── hybrid-pipeline-example.png │ │ ├── model-parallelism.png │ │ ├── multiprocessing.png │ │ ├── ner_metrics_example.png │ │ ├── sharing-components.png │ │ ├── synonym_span_linker.png │ │ └── transformer-windowing.svg │ ├── logo │ │ ├── aphp-blue.svg │ │ ├── aphp-white.svg │ │ └── edsnlp.svg │ ├── overrides │ │ ├── main.html │ │ └── partials │ │ │ └── comments.html │ └── stylesheets │ │ ├── extra.css │ │ ├── giscus_dark.css │ │ └── giscus_light.css ├── concepts │ ├── inference.md │ ├── pipeline.md │ └── torch-component.md ├── data │ ├── conll.md │ ├── converters.md │ ├── index.md │ ├── json.md │ ├── overview.png │ ├── pandas.md │ ├── parquet.md │ ├── polars.md │ ├── spark.md │ └── standoff.md ├── index.md ├── metrics │ ├── index.md │ ├── ner.md │ └── span-attribute.md ├── pipes │ ├── architecture.md │ ├── core │ │ ├── contextual-matcher.md │ │ ├── endlines.md │ │ ├── index.md │ │ ├── matcher.md │ │ ├── normalizer.md │ │ ├── resources │ │ │ ├── alignment.svg │ │ │ └── span-alignment.svg │ │ ├── sentences.md │ │ └── terminology.md │ ├── index.md │ ├── llm │ │ ├── index.md │ │ ├── llm-markup-extraction.md │ │ └── llm-span-qualifier.md │ ├── misc │ │ ├── consultation-dates.md │ │ ├── dates.md │ │ ├── explode.md │ │ ├── index.md │ │ ├── quantities.md │ │ ├── reason.md │ │ ├── sections.md │ │ ├── split.md │ │ └── tables.md │ ├── ner │ │ ├── adicap.md │ │ ├── behaviors │ │ │ ├── alcohol.md │ │ │ ├── index.md │ │ │ └── tobacco.md │ │ ├── cim10.md │ │ ├── covid.md │ │ ├── disorders │ │ │ ├── aids.md │ │ │ ├── cerebrovascular-accident.md │ │ │ ├── ckd.md │ │ │ ├── congestive-heart-failure.md │ │ │ ├── connective-tissue-disease.md │ │ │ ├── copd.md │ │ │ ├── dementia.md │ │ │ ├── diabetes.md │ │ │ ├── hemiplegia.md │ │ │ ├── index.md │ │ │ ├── leukemia.md │ │ │ ├── liver-disease.md │ │ │ ├── lymphoma.md │ │ │ ├── myocardial-infarction.md │ │ │ ├── peptic-ulcer-disease.md │ │ │ ├── peripheral-vascular-disease.md │ │ │ └── solid-tumor.md │ │ ├── drugs.md │ │ ├── index.md │ │ ├── scores │ │ │ ├── charlson.md │ │ │ ├── elston-ellis.md │ │ │ ├── emergency-ccmu.md │ │ │ ├── emergency-gemsa.md │ │ │ ├── emergency-priority.md │ │ │ ├── index.md │ │ │ └── sofa.md │ │ ├── suicide_attempt.md │ │ ├── tnm.md │ │ └── umls.md │ ├── qualifiers │ │ ├── family.md │ │ ├── history.md │ │ ├── hypothesis.md │ │ ├── index.md │ │ ├── negation.md │ │ └── reported-speech.md │ └── trainable │ │ ├── biaffine-dependency-parser.md │ │ ├── embeddings │ │ ├── span_pooler.md │ │ ├── text_cnn.md │ │ └── transformer.md │ │ ├── extractive-qa.md │ │ ├── index.md │ │ ├── ner.md │ │ ├── span-classifier.md │ │ └── span-linker.md ├── references.bib ├── resources │ └── sections.svg ├── scripts │ └── griffe_ext.py ├── tokenizers.md ├── training │ ├── index.md │ ├── loggers.md │ └── training-api.md ├── tutorials │ ├── aggregating-results.md │ ├── detecting-dates.md │ ├── endlines.md │ ├── hpc.md │ ├── index.md │ ├── make-a-training-script.md │ ├── matching-a-terminology.md │ ├── multiple-texts.md │ ├── qualifying-entities.md │ ├── reason.md │ ├── spacy101.md │ ├── training-ner.md │ ├── training-span-classifier.md │ ├── tuning.md │ └── visualization.md └── utilities │ ├── annotation-migration.md │ ├── connectors │ ├── brat.md │ ├── labeltool.md │ ├── omop.md │ └── overview.md │ ├── evaluation.md │ ├── index.md │ ├── matchers.md │ ├── regex.md │ └── tests │ ├── blocs.md │ ├── examples.md │ └── index.md ├── edsnlp ├── __init__.py ├── connectors │ ├── __init__.py │ ├── brat.py │ ├── labeltool.py │ └── omop.py ├── core │ ├── __init__.py │ ├── pipeline.py │ ├── registries.py │ ├── stream.py │ └── torch_component.py ├── data │ ├── __init__.py │ ├── base.py │ ├── brat.py │ ├── conll.py │ ├── converters.py │ ├── json.py │ ├── pandas.py │ ├── parquet.py │ ├── polars.py │ ├── spark.py │ └── standoff.py ├── evaluate.py ├── extensions.py ├── language.py ├── matchers │ ├── __init__.py │ ├── phrase.pxd │ ├── phrase.pyx │ ├── regex.py │ ├── simstring.py │ └── utils │ │ ├── __init__.py │ │ ├── offset.py │ │ └── text.py ├── metrics │ ├── __init__.py │ ├── dep_parsing.py │ ├── ner.py │ └── span_attribute.py ├── package.py ├── patch_spacy.py ├── pipes │ ├── __init__.py │ ├── base.py │ ├── core │ │ ├── __init__.py │ │ ├── contextual_matcher │ │ │ ├── __init__.py │ │ │ ├── contextual_matcher.py │ │ │ ├── factory.py │ │ │ └── models.py │ │ ├── endlines │ │ │ ├── __init__.py │ │ │ ├── endlines.py │ │ │ ├── factory.py │ │ │ ├── functional.py │ │ │ └── model.py │ │ ├── matcher │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── matcher.py │ │ ├── normalizer │ │ │ ├── __init__.py │ │ │ ├── accents │ │ │ │ ├── __init__.py │ │ │ │ ├── accents.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── factory.py │ │ │ ├── normalizer.py │ │ │ ├── pollution │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── pollution.py │ │ │ ├── quotes │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── quotes.py │ │ │ ├── remove_lowercase │ │ │ │ ├── __init__.py │ │ │ │ └── factory.py │ │ │ └── spaces │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ └── spaces.py │ │ ├── sentences │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── fast_sentences.pxd │ │ │ ├── fast_sentences.pyx │ │ │ ├── sentences.py │ │ │ └── terms.py │ │ └── terminology │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── terminology.py │ ├── llm │ │ ├── __init__.py │ │ ├── async_worker.py │ │ ├── llm_markup_extractor │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── llm_markup_extractor.py │ │ └── llm_span_qualifier │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── llm_span_qualifier.py │ ├── misc │ │ ├── __init__.py │ │ ├── consultation_dates │ │ │ ├── __init__.py │ │ │ ├── consultation_dates.py │ │ │ ├── factory.py │ │ │ └── patterns.py │ │ ├── dates │ │ │ ├── __init__.py │ │ │ ├── dates.py │ │ │ ├── factory.py │ │ │ ├── models.py │ │ │ ├── normalizer.py │ │ │ └── patterns │ │ │ │ ├── __init__.py │ │ │ │ ├── absolute.py │ │ │ │ ├── atomic │ │ │ │ ├── __init__.py │ │ │ │ ├── days.py │ │ │ │ ├── delimiters.py │ │ │ │ ├── directions.py │ │ │ │ ├── modes.py │ │ │ │ ├── months.py │ │ │ │ ├── numbers.py │ │ │ │ ├── time.py │ │ │ │ ├── units.py │ │ │ │ └── years.py │ │ │ │ ├── current.py │ │ │ │ ├── duration.py │ │ │ │ ├── false_positive.py │ │ │ │ └── relative.py │ │ ├── explode │ │ │ ├── __init__.py │ │ │ └── explode.py │ │ ├── quantities │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── patterns.py │ │ │ └── quantities.py │ │ ├── reason │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── patterns.py │ │ │ └── reason.py │ │ ├── sections │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── patterns.py │ │ │ └── sections.py │ │ ├── split │ │ │ ├── __init__.py │ │ │ └── split.py │ │ └── tables │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── patterns.py │ │ │ └── tables.py │ ├── ner │ │ ├── __init__.py │ │ ├── adicap │ │ │ ├── __init__.py │ │ │ ├── adicap.py │ │ │ ├── factory.py │ │ │ ├── models.py │ │ │ └── patterns.py │ │ ├── behaviors │ │ │ ├── __init__.py │ │ │ ├── alcohol │ │ │ │ ├── __init__.py │ │ │ │ ├── alcohol.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ └── tobacco │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── tobacco.py │ │ ├── cim10 │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── patterns.py │ │ ├── covid │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── patterns.py │ │ ├── disorders │ │ │ ├── __init__.py │ │ │ ├── aids │ │ │ │ ├── __init__.py │ │ │ │ ├── aids.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── base.py │ │ │ ├── cerebrovascular_accident │ │ │ │ ├── __init__.py │ │ │ │ ├── cerebrovascular_accident.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── ckd │ │ │ │ ├── __init__.py │ │ │ │ ├── ckd.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── congestive_heart_failure │ │ │ │ ├── __init__.py │ │ │ │ ├── congestive_heart_failure.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── connective_tissue_disease │ │ │ │ ├── __init__.py │ │ │ │ ├── connective_tissue_disease.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── copd │ │ │ │ ├── __init__.py │ │ │ │ ├── copd.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── dementia │ │ │ │ ├── __init__.py │ │ │ │ ├── dementia.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── diabetes │ │ │ │ ├── __init__.py │ │ │ │ ├── diabetes.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── hemiplegia │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── hemiplegia.py │ │ │ │ └── patterns.py │ │ │ ├── leukemia │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── leukemia.py │ │ │ │ └── patterns.py │ │ │ ├── liver_disease │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── liver_disease.py │ │ │ │ └── patterns.py │ │ │ ├── lymphoma │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── lymphoma.py │ │ │ │ └── patterns.py │ │ │ ├── myocardial_infarction │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── myocardial_infarction.py │ │ │ │ └── patterns.py │ │ │ ├── peptic_ulcer_disease │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── peptic_ulcer_disease.py │ │ │ ├── peripheral_vascular_disease │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── peripheral_vascular_disease.py │ │ │ ├── solid_tumor │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── solid_tumor.py │ │ │ └── terms.py │ │ ├── drugs │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── patterns.py │ │ ├── scores │ │ │ ├── __init__.py │ │ │ ├── base_score.py │ │ │ ├── charlson │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── elston_ellis │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ └── patterns.py │ │ │ ├── emergency │ │ │ │ ├── __init__.py │ │ │ │ ├── ccmu │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── factory.py │ │ │ │ │ └── patterns.py │ │ │ │ ├── gemsa │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── factory.py │ │ │ │ │ └── patterns.py │ │ │ │ └── priority │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── factory.py │ │ │ │ │ └── patterns.py │ │ │ ├── factory.py │ │ │ └── sofa │ │ │ │ ├── __init__.py │ │ │ │ ├── factory.py │ │ │ │ ├── patterns.py │ │ │ │ └── sofa.py │ │ ├── suicide_attempt │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── patterns.py │ │ │ └── suicide_attempt.py │ │ ├── tnm │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── model.py │ │ │ ├── patterns.py │ │ │ └── tnm.py │ │ └── umls │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── patterns.py │ ├── qualifiers │ │ ├── __init__.py │ │ ├── base.py │ │ ├── family │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── family.py │ │ │ └── patterns.py │ │ ├── history │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── history.py │ │ │ └── patterns.py │ │ ├── hypothesis │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── hypothesis.py │ │ │ └── patterns.py │ │ ├── negation │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── negation.py │ │ │ └── patterns.py │ │ └── reported_speech │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ ├── patterns.py │ │ │ └── reported_speech.py │ ├── terminations.py │ └── trainable │ │ ├── __init__.py │ │ ├── biaffine_dep_parser │ │ ├── __init__.py │ │ ├── biaffine_dep_parser.py │ │ └── factory.py │ │ ├── embeddings │ │ ├── __init__.py │ │ ├── span_pooler │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── span_pooler.py │ │ ├── text_cnn │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── text_cnn.py │ │ ├── transformer │ │ │ ├── __init__.py │ │ │ ├── factory.py │ │ │ └── transformer.py │ │ └── typing.py │ │ ├── extractive_qa │ │ ├── __init__.py │ │ ├── extractive_qa.py │ │ └── factory.py │ │ ├── layers │ │ ├── __init__.py │ │ ├── crf.py │ │ ├── metric.py │ │ └── text_cnn.py │ │ ├── ner_crf │ │ ├── __init__.py │ │ ├── factory.py │ │ └── ner_crf.py │ │ ├── span_classifier │ │ ├── __init__.py │ │ ├── factory.py │ │ └── span_classifier.py │ │ └── span_linker │ │ ├── __init__.py │ │ ├── factory.py │ │ └── span_linker.py ├── processing │ ├── __init__.py │ ├── deprecated_pipe.py │ ├── multiprocessing.py │ ├── simple.py │ └── spark.py ├── reducers.py ├── resources │ ├── AVC.csv.gz │ ├── adicap.json.gz │ ├── cim10.csv.gz │ ├── drugs.json │ └── verbs.csv.gz ├── train.py ├── training │ ├── __init__.py │ ├── loggers.py │ ├── optimizer.py │ └── trainer.py ├── tune.py ├── utils │ ├── __init__.py │ ├── batching.py │ ├── bindings.py │ ├── collections.py │ ├── deprecation.py │ ├── doc_to_text.py │ ├── examples.py │ ├── extensions.py │ ├── file_system.py │ ├── filter.py │ ├── fuzzy_alignment.py │ ├── inclusion.py │ ├── lazy_module.py │ ├── numbers.py │ ├── regex_utils.py │ ├── resources.py │ ├── span_getters.py │ ├── spark_dtypes.py │ ├── stream_sentinels.py │ ├── torch.py │ └── typing.py └── viz │ └── __init__.py ├── mkdocs.yml ├── notebooks ├── README.md ├── connectors │ ├── context.py │ └── omop.md ├── context.py ├── dates │ ├── context.py │ ├── prototype.md │ └── user-guide.md ├── endlines │ └── endlines-example.md ├── example.txt ├── normalizer │ ├── context.py │ ├── profiling.md │ └── prototype.md ├── pipeline.md ├── premier-pipeline.md ├── sections │ ├── annotated_sections.csv │ ├── context.py │ ├── section-dataset.md │ ├── sections.xlsx │ └── testing.md ├── sentences │ ├── context.py │ └── sentences.md ├── tnm │ └── prototype.md ├── tokenizer │ ├── context.py │ └── tokenizer.md └── utilities │ ├── brat.md │ └── context.py ├── pyproject.toml ├── scripts ├── adicap.py ├── cim10.py ├── conjugate_verbs.py ├── context.py └── serve.py ├── setup.py └── tests ├── conftest.py ├── connectors ├── test_labeltool.py └── test_omop.py ├── data ├── test_conll.py ├── test_converters.py ├── test_json.py ├── test_pandas.py ├── test_parquet.py ├── test_polars.py ├── test_spark.py ├── test_standoff.py └── test_stream.py ├── extract_docs_code.py ├── helpers.py ├── matchers ├── test_phrase.py ├── test_regex.py └── test_simstring.py ├── pipelines ├── core │ ├── test_contextual_matcher.py │ ├── test_endlines.py │ ├── test_matcher.py │ ├── test_normalisation.py │ ├── test_sentences.py │ └── test_terminology.py ├── llm │ ├── mock_llm_service.py │ ├── test_llm_markup_extractor.py │ └── test_llm_span_qualifier.py ├── misc │ ├── test_consultation_date.py │ ├── test_consultation_date_town.py │ ├── test_dates.py │ ├── test_explode.py │ ├── test_quantities.py │ ├── test_reason.py │ ├── test_sections.py │ ├── test_split.py │ └── test_tables.py ├── ner │ ├── disorders │ │ ├── AIDS.py │ │ ├── CKD.py │ │ ├── COPD.py │ │ ├── alcohol.py │ │ ├── cerebrovascular_accident.py │ │ ├── congestive_heart_failure.py │ │ ├── connective_tissue_disease.py │ │ ├── dementia.py │ │ ├── diabetes.py │ │ ├── hemiplegia.py │ │ ├── leukemia.py │ │ ├── liver_disease.py │ │ ├── lymphoma.py │ │ ├── myocardial_infarction.py │ │ ├── peptic_ulcer_disease.py │ │ ├── peripheral_vascular_disease.py │ │ ├── solid_tumor.py │ │ ├── test_all.py │ │ └── tobacco.py │ ├── test_adicap.py │ ├── test_adicap_decoder.py │ ├── test_cim10.py │ ├── test_covid.py │ ├── test_drugs.py │ ├── test_score.py │ ├── test_suicide_attempt.py │ ├── test_tnm.py │ ├── test_umls.py │ └── test_value_extension.py ├── qualifiers │ ├── conftest.py │ ├── test_family.py │ ├── test_history.py │ ├── test_hypothesis.py │ ├── test_negation.py │ └── test_reported_speech.py ├── test_pipelines.py └── trainable │ ├── test_extractive_qa.py │ ├── test_ner.py │ ├── test_span_linker.py │ ├── test_span_qualifier.py │ └── test_transformer.py ├── processing ├── mp_simple_pipe.py ├── test_backends.py └── test_processing.py ├── readme.md ├── resources ├── brat_data │ └── subfolder │ │ ├── doc-1.ann │ │ ├── doc-1.txt │ │ ├── doc-2.txt │ │ └── doc-3.txt ├── docs.jsonl └── docs.parquet ├── test_docs.py ├── test_entrypoints.py ├── test_language.py ├── test_pipeline.py ├── test_reducers.py ├── test_scorers.py ├── test_span_args.py ├── training ├── dataset.jsonl ├── dataset │ ├── annotation.conf │ ├── sample-1.ann │ ├── sample-1.txt │ ├── sample-2.ann │ └── sample-2.txt ├── dataset_2 │ ├── dev │ │ ├── doc-0.ann │ │ ├── doc-0.txt │ │ ├── doc-1.ann │ │ ├── doc-1.txt │ │ ├── doc-2.ann │ │ ├── doc-2.txt │ │ ├── doc-3.ann │ │ ├── doc-3.txt │ │ ├── doc-4.ann │ │ └── doc-4.txt │ └── train │ │ ├── doc-0.ann │ │ ├── doc-0.txt │ │ ├── doc-1.ann │ │ ├── doc-1.txt │ │ ├── doc-10.ann │ │ ├── doc-10.txt │ │ ├── doc-11.ann │ │ ├── doc-11.txt │ │ ├── doc-12.ann │ │ ├── doc-12.txt │ │ ├── doc-13.ann │ │ ├── doc-13.txt │ │ ├── doc-14.ann │ │ ├── doc-14.txt │ │ ├── doc-15.ann │ │ ├── doc-15.txt │ │ ├── doc-16.ann │ │ ├── doc-16.txt │ │ ├── doc-17.ann │ │ ├── doc-17.txt │ │ ├── doc-18.ann │ │ ├── doc-18.txt │ │ ├── doc-19.ann │ │ ├── doc-19.txt │ │ ├── doc-2.ann │ │ ├── doc-2.txt │ │ ├── doc-20.ann │ │ ├── doc-20.txt │ │ ├── doc-21.ann │ │ ├── doc-21.txt │ │ ├── doc-22.ann │ │ ├── doc-22.txt │ │ ├── doc-23.ann │ │ ├── doc-23.txt │ │ ├── doc-24.ann │ │ ├── doc-24.txt │ │ ├── doc-3.ann │ │ ├── doc-3.txt │ │ ├── doc-4.ann │ │ ├── doc-4.txt │ │ ├── doc-5.ann │ │ ├── doc-5.txt │ │ ├── doc-6.ann │ │ ├── doc-6.txt │ │ ├── doc-7.ann │ │ ├── doc-7.txt │ │ ├── doc-8.ann │ │ ├── doc-8.txt │ │ ├── doc-9.ann │ │ └── doc-9.txt ├── dep_parser_config.yml ├── ner_qlf_diff_bert_config.yml ├── ner_qlf_same_bert_config.yml ├── qlf_config.yml ├── rhapsodie_sample.conllu ├── test_optimizer.py └── test_train.py ├── tuning ├── config.cfg ├── config.yml ├── test_end_to_end.py ├── test_tuning.py └── test_update_config.py └── utils ├── test_batching.py ├── test_bindings.py ├── test_collections.py ├── test_examples.py ├── test_filter.py ├── test_fuzzy_aligment.py ├── test_package.py ├── test_span_getters.py ├── test_spark_dtypes.py └── test_typing.py 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