├── .gitignore ├── .gitmodules ├── .idea ├── dictionaries │ └── rhl.xml └── vcs.xml ├── .travis.yml ├── CMakeLists.txt ├── README.md ├── ctl.spec ├── ctl ├── abstract_simplex │ ├── abstract_simplex.hpp │ └── simplex_boundary.hpp ├── cell_complex │ ├── cell_complex.hpp │ ├── complex_boundary.hpp │ └── detail │ │ └── data_wrapper.hpp ├── chain │ ├── chain.hpp │ └── chain_add.hpp ├── cover │ └── cover.hpp ├── ctl.hpp ├── cube │ ├── cube.hpp │ ├── cube_boundary.hpp │ └── detail │ │ └── cube.hpp ├── example │ └── example.hpp ├── finite_field │ └── finite_field.hpp ├── graded_chain_complex │ ├── filtration_iterator.hpp │ ├── graded_boundary.hpp │ ├── graded_cell_complex.hpp │ └── less.hpp ├── hash │ ├── MurmurHash3.hpp │ ├── city.hpp │ └── hash.hpp ├── io │ └── io.hpp ├── matrix │ ├── iterator_property_map.hpp │ ├── matrix.hpp │ └── offset_maps.hpp ├── maximal_cliques │ ├── clique_output_iterator.h │ ├── maximal_cliques.hpp │ ├── test_clique_output_iterator.cpp │ └── test_maximal_cliques.cpp ├── metrics │ └── metric.hpp ├── nbhd_graph │ ├── all_pairs.hpp │ ├── epsilon_search.hpp │ └── nbhd_graph.hpp ├── one_skeleton │ ├── complex_to_graph.hpp │ ├── graph_to_metis.hpp │ └── one_skeleton.hpp ├── parallel │ ├── build_blowup_complex │ │ └── build_blowup_complex.hpp │ ├── chain_complex │ │ └── chain_complex.hpp │ ├── filtration │ │ └── filtration.hpp │ ├── homology │ │ ├── homology.hpp │ │ └── persistence.hpp │ ├── partition_covers │ │ ├── .covers.h.swn │ │ ├── .covers.h.swo │ │ ├── cover_data.hpp │ │ ├── cover_stats.hpp │ │ ├── covers.hpp │ │ └── graph_partition.hpp │ └── utility │ │ └── timer.hpp ├── persistence │ ├── barcodes │ │ └── barcodes.hpp │ ├── compute_barcodes.hpp │ ├── compute_betti.hpp │ ├── persistence.hpp │ ├── persistence_data.hpp │ └── unpair_cells.hpp ├── points │ └── points.hpp ├── product_cell │ ├── iterator_product_boundary.hpp │ ├── iterator_product_cell.hpp │ ├── product_boundary.hpp │ ├── product_cell.hpp │ └── product_cell_less.hpp ├── term │ ├── term.hpp │ ├── term_less.hpp │ └── term_tags.hpp ├── utility │ └── timer.hpp ├── vr │ ├── incremental_complex.hpp │ ├── inductive_complex.hpp │ └── vr.hpp └── weight_data │ ├── weight_data.hpp │ └── weight_functor.hpp ├── dependencies ├── CMakeLists.txt ├── CMakeModules │ ├── CXX11.cmake │ ├── FindANN.cmake │ ├── FindGTest.cmake │ ├── FindMETIS.cmake │ └── FindTBB.cmake └── catch │ └── catch.hpp ├── doc ├── AUTHORS ├── Doxyfile.in ├── LICENSE └── ct.bib ├── man ├── build_clique.1 ├── complex_size.1 ├── concurrent_homology.1 ├── cover_homology.1 ├── duplicate.1 ├── euler.1 ├── gpcover.1 ├── metowgh.1 ├── oneskeleton.1 ├── persistence.1 ├── wghtomet.1 └── write_filtration.1 ├── python ├── CMakeLists.txt ├── ctl.cpp ├── wrap_complex.hpp ├── wrap_cube.hpp ├── wrap_ff.hpp ├── wrap_persistence.hpp ├── wrap_prod_complex.hpp ├── wrap_product.hpp ├── wrap_simplex.hpp ├── wrap_term.hpp └── wrap_vr.hpp ├── tests ├── CMakeLists.txt ├── ctl_test.cpp ├── test_abstract_simplex.cpp ├── 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