├── .dockerignore ├── .env.example ├── .flaskenv ├── .github ├── ISSUE_TEMPLATE.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ └── main.yml ├── .gitignore ├── .vscode └── settings.json ├── Dockerfile ├── GET_STARTED.md ├── LICENSE ├── Makefile ├── README.md ├── __init__.py ├── config.yml ├── config_docker.yml ├── docker-compose.yml ├── docker ├── 0_check_config.sh ├── 1_postgres_create_tables.sql ├── 2_postgres_load_data.sql ├── 3_postgres_add_indexes.sql ├── 4_postgres_add_constraints.sql └── MimicPSQL.Dockerfile ├── examples ├── config_cw_local.sql └── pipeline.ipynb ├── fhirpipe ├── __init__.py ├── analyze │ ├── __init__.py │ ├── analysis.py │ ├── analyzer.py │ ├── attribute.py │ ├── cleaning_script.py │ ├── concept_map.py │ ├── mapping.py │ ├── merging_script.py │ ├── sql_column.py │ └── sql_join.py ├── api │ ├── API.md │ ├── __init__.py │ ├── api.py │ ├── prod.py │ └── routes.py ├── cli │ ├── __init__.py │ ├── cli_run.py │ └── parse_args.py ├── errors.py ├── extract │ ├── __init__.py │ ├── extractor.py │ └── graphql.py ├── load │ ├── __init__.py │ ├── fhirstore.py │ └── loader.py ├── references │ ├── __init__.py │ └── reference_binder.py ├── run.py └── transform │ ├── __init__.py │ ├── dataframe.py │ ├── fhir.py │ └── transformer.py ├── nginx.conf ├── requirements-dev.txt ├── requirements.txt ├── scripts ├── wait_for_api.sh └── wait_for_db.sh ├── setup.cfg ├── setup.py ├── start.sh ├── test ├── __init__.py ├── fixtures │ ├── mimic_mapping.json │ ├── patient_mapping.json │ └── small_mimic_mapping.json ├── integration │ ├── __init__.py │ ├── config-test.yml │ ├── conftest.py │ ├── docker-compose.test.yml │ ├── docker-test-config │ │ ├── init.sql │ │ └── mockdata │ │ │ ├── admissions.csv │ │ │ ├── caregivers.csv │ │ │ ├── diagnoses_icd.csv │ │ │ ├── icustays.csv │ │ │ ├── patients.csv │ │ │ └── prescriptions.csv │ └── test_integration.py └── unit │ ├── analyze │ ├── test_analyzer.py │ ├── test_cleaning_script.py │ ├── test_concept_map.py │ ├── test_mapping.py │ └── test_merging_script.py │ ├── conftest.py │ ├── extract │ ├── __init__.py │ ├── test_extractor.py │ └── test_graphql.py │ ├── load │ ├── __init__.py │ └── test_fhirstore.py │ ├── references │ ├── __init__.py │ └── test_reference_binder.py │ └── transform │ ├── __init__.py │ ├── test_dataframe.py │ └── test_fhir.py └── uwsgi.ini /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.dockerignore -------------------------------------------------------------------------------- /.env.example: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.env.example -------------------------------------------------------------------------------- /.flaskenv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.flaskenv -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.github/ISSUE_TEMPLATE.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/workflows/main.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.github/workflows/main.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.gitignore -------------------------------------------------------------------------------- /.vscode/settings.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/.vscode/settings.json -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/Dockerfile -------------------------------------------------------------------------------- /GET_STARTED.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/GET_STARTED.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/config.yml -------------------------------------------------------------------------------- /config_docker.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/config_docker.yml -------------------------------------------------------------------------------- /docker-compose.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker-compose.yml -------------------------------------------------------------------------------- /docker/0_check_config.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker/0_check_config.sh -------------------------------------------------------------------------------- /docker/1_postgres_create_tables.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker/1_postgres_create_tables.sql -------------------------------------------------------------------------------- /docker/2_postgres_load_data.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker/2_postgres_load_data.sql -------------------------------------------------------------------------------- /docker/3_postgres_add_indexes.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker/3_postgres_add_indexes.sql -------------------------------------------------------------------------------- /docker/4_postgres_add_constraints.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker/4_postgres_add_constraints.sql -------------------------------------------------------------------------------- /docker/MimicPSQL.Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/docker/MimicPSQL.Dockerfile -------------------------------------------------------------------------------- /examples/config_cw_local.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/examples/config_cw_local.sql -------------------------------------------------------------------------------- /examples/pipeline.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/examples/pipeline.ipynb -------------------------------------------------------------------------------- /fhirpipe/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/__init__.py -------------------------------------------------------------------------------- /fhirpipe/analyze/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/__init__.py -------------------------------------------------------------------------------- /fhirpipe/analyze/analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/analysis.py -------------------------------------------------------------------------------- /fhirpipe/analyze/analyzer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/analyzer.py -------------------------------------------------------------------------------- /fhirpipe/analyze/attribute.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/attribute.py -------------------------------------------------------------------------------- /fhirpipe/analyze/cleaning_script.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/cleaning_script.py -------------------------------------------------------------------------------- /fhirpipe/analyze/concept_map.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/concept_map.py -------------------------------------------------------------------------------- /fhirpipe/analyze/mapping.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/mapping.py -------------------------------------------------------------------------------- /fhirpipe/analyze/merging_script.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/merging_script.py -------------------------------------------------------------------------------- /fhirpipe/analyze/sql_column.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/sql_column.py -------------------------------------------------------------------------------- /fhirpipe/analyze/sql_join.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/analyze/sql_join.py -------------------------------------------------------------------------------- /fhirpipe/api/API.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/api/API.md -------------------------------------------------------------------------------- /fhirpipe/api/__init__.py: -------------------------------------------------------------------------------- 1 | from .api import create_app # noqa 2 | -------------------------------------------------------------------------------- /fhirpipe/api/api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/api/api.py -------------------------------------------------------------------------------- /fhirpipe/api/prod.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/api/prod.py -------------------------------------------------------------------------------- /fhirpipe/api/routes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/api/routes.py -------------------------------------------------------------------------------- /fhirpipe/cli/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/cli/__init__.py -------------------------------------------------------------------------------- /fhirpipe/cli/cli_run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/cli/cli_run.py -------------------------------------------------------------------------------- /fhirpipe/cli/parse_args.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/cli/parse_args.py -------------------------------------------------------------------------------- /fhirpipe/errors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/errors.py -------------------------------------------------------------------------------- /fhirpipe/extract/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/extract/__init__.py -------------------------------------------------------------------------------- /fhirpipe/extract/extractor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/extract/extractor.py -------------------------------------------------------------------------------- /fhirpipe/extract/graphql.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/extract/graphql.py -------------------------------------------------------------------------------- /fhirpipe/load/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/load/__init__.py -------------------------------------------------------------------------------- /fhirpipe/load/fhirstore.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/load/fhirstore.py -------------------------------------------------------------------------------- /fhirpipe/load/loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/load/loader.py -------------------------------------------------------------------------------- /fhirpipe/references/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/references/__init__.py -------------------------------------------------------------------------------- /fhirpipe/references/reference_binder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/references/reference_binder.py -------------------------------------------------------------------------------- /fhirpipe/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/run.py -------------------------------------------------------------------------------- /fhirpipe/transform/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/transform/__init__.py -------------------------------------------------------------------------------- /fhirpipe/transform/dataframe.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/transform/dataframe.py -------------------------------------------------------------------------------- /fhirpipe/transform/fhir.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/transform/fhir.py -------------------------------------------------------------------------------- /fhirpipe/transform/transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/fhirpipe/transform/transformer.py -------------------------------------------------------------------------------- /nginx.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/nginx.conf -------------------------------------------------------------------------------- /requirements-dev.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/requirements-dev.txt -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/requirements.txt -------------------------------------------------------------------------------- /scripts/wait_for_api.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/scripts/wait_for_api.sh -------------------------------------------------------------------------------- /scripts/wait_for_db.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/scripts/wait_for_db.sh -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/setup.py -------------------------------------------------------------------------------- /start.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/start.sh -------------------------------------------------------------------------------- /test/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /test/fixtures/mimic_mapping.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/fixtures/mimic_mapping.json -------------------------------------------------------------------------------- /test/fixtures/patient_mapping.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/fixtures/patient_mapping.json -------------------------------------------------------------------------------- /test/fixtures/small_mimic_mapping.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/fixtures/small_mimic_mapping.json -------------------------------------------------------------------------------- /test/integration/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /test/integration/config-test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/config-test.yml -------------------------------------------------------------------------------- /test/integration/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/conftest.py -------------------------------------------------------------------------------- /test/integration/docker-compose.test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-compose.test.yml -------------------------------------------------------------------------------- /test/integration/docker-test-config/init.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/init.sql -------------------------------------------------------------------------------- /test/integration/docker-test-config/mockdata/admissions.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/mockdata/admissions.csv -------------------------------------------------------------------------------- /test/integration/docker-test-config/mockdata/caregivers.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/mockdata/caregivers.csv -------------------------------------------------------------------------------- /test/integration/docker-test-config/mockdata/diagnoses_icd.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/mockdata/diagnoses_icd.csv -------------------------------------------------------------------------------- /test/integration/docker-test-config/mockdata/icustays.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/mockdata/icustays.csv -------------------------------------------------------------------------------- /test/integration/docker-test-config/mockdata/patients.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/mockdata/patients.csv -------------------------------------------------------------------------------- /test/integration/docker-test-config/mockdata/prescriptions.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/docker-test-config/mockdata/prescriptions.csv -------------------------------------------------------------------------------- /test/integration/test_integration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/integration/test_integration.py -------------------------------------------------------------------------------- /test/unit/analyze/test_analyzer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/analyze/test_analyzer.py -------------------------------------------------------------------------------- /test/unit/analyze/test_cleaning_script.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/analyze/test_cleaning_script.py -------------------------------------------------------------------------------- /test/unit/analyze/test_concept_map.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/analyze/test_concept_map.py -------------------------------------------------------------------------------- /test/unit/analyze/test_mapping.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/analyze/test_mapping.py -------------------------------------------------------------------------------- /test/unit/analyze/test_merging_script.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/analyze/test_merging_script.py -------------------------------------------------------------------------------- /test/unit/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/conftest.py -------------------------------------------------------------------------------- /test/unit/extract/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /test/unit/extract/test_extractor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/extract/test_extractor.py -------------------------------------------------------------------------------- /test/unit/extract/test_graphql.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/extract/test_graphql.py -------------------------------------------------------------------------------- /test/unit/load/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /test/unit/load/test_fhirstore.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/load/test_fhirstore.py -------------------------------------------------------------------------------- /test/unit/references/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/references/__init__.py -------------------------------------------------------------------------------- /test/unit/references/test_reference_binder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/references/test_reference_binder.py -------------------------------------------------------------------------------- /test/unit/transform/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/transform/__init__.py -------------------------------------------------------------------------------- /test/unit/transform/test_dataframe.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/transform/test_dataframe.py -------------------------------------------------------------------------------- /test/unit/transform/test_fhir.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/test/unit/transform/test_fhir.py -------------------------------------------------------------------------------- /uwsgi.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arkhn-oss/fhir-pipe/HEAD/uwsgi.ini --------------------------------------------------------------------------------