├── .gitignore ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── examples ├── data │ ├── STRFs_ChirpsBlocks_IC_2012-01-31_50dB_chan01_unit01.h5 │ ├── STRFs_ChirpsBlocks_IC_2012-04-26_Pos_02_30dB_chan01_unit02.h5 │ └── wav │ │ ├── FMBanks_Blocks_10_b2878795b5dfa2da14f1f9c5e9770fe3.wav │ │ ├── FMBanks_Blocks_1_7b3ebc145d4ece03ced9be83272be4b6.wav │ │ ├── FMBanks_Blocks_2_5ca210625d27bfdbd07291e52d3b2f14.wav │ │ ├── FMBanks_Blocks_3_82584dbb4cd15c8f82b0d26d0aeba9bc.wav │ │ ├── FMBanks_Blocks_4_8d64b4353e58d1e70694efad834a9cb9.wav │ │ ├── FMBanks_Blocks_5_97267a3cc48ac6fda051976404d334a5.wav │ │ ├── FMBanks_Blocks_6_6a78a86e30b9410f75acbf2ab3c82a1a.wav │ │ ├── FMBanks_Blocks_7_e0faa289643b305fd89139503a7a9fb3.wav │ │ ├── FMBanks_Blocks_8_9f71c88a756bc873c9392e94658b813c.wav │ │ └── FMBanks_Blocks_9_795f5eeac6dfbabfa6995f85cc9c862e.wav ├── example_Data_dense_sparse.py ├── example_IC_recordings.py ├── example_context_model.py ├── example_fit_binary_models.py ├── example_gratings.py └── example_recordings_post_spike_filter.py ├── license.txt ├── lnpy ├── __init__.py ├── base.py ├── fast_tools.cpp ├── fast_tools.pyx ├── io │ ├── __init__.py │ └── hdf.py ├── job.py ├── learn │ ├── __init__.py │ ├── base.py │ ├── glm.py │ ├── grid_search.py │ ├── pyhelper.cpp │ ├── pyhelper.pxd │ ├── pyhelper.pyx │ ├── setup.py │ ├── sgd.py │ ├── src │ │ ├── blas │ │ │ ├── blas.h │ │ │ ├── blasp.h │ │ │ ├── daxpy.c │ │ │ ├── ddot.c │ │ │ ├── dnrm2.c │ │ │ └── dscal.c │ │ └── code │ │ │ ├── COPYRIGHT │ │ │ ├── helper.cpp │ │ │ ├── helper.h │ │ │ ├── sgd.cpp │ │ │ ├── sgd.h │ │ │ ├── tron.cpp │ │ │ ├── tron.h │ │ │ ├── wrap_tron.cpp │ │ │ └── wrap_tron.h │ └── svm.py ├── linear │ ├── __init__.py │ ├── ald.py │ ├── ard.py │ ├── asd.py │ ├── base.py │ ├── matlab_code │ │ ├── Description for testScript.html │ │ ├── README.md │ │ ├── compPostMeanVar.m │ │ ├── fastCrossCov.m │ │ ├── formDataStruct.m │ │ ├── genStim.m │ │ ├── genkTrue.m │ │ ├── gradLogEv.m │ │ ├── gradLogEv_ALDs.m │ │ ├── gradPrior_ALDf.m │ │ ├── gradPrior_ALDf_diag.m │ │ ├── gradPrior_ALDs.m │ │ ├── gradPrior_ALDsf.m │ │ ├── runALD.m │ │ ├── runALDf.m │ │ ├── runALDf_diag.m │ │ ├── runALDf_paramM.m │ │ ├── runALDs.m │ │ ├── runALDsf.m │ │ ├── runRidge.m │ │ ├── testScript.m │ │ └── tools │ │ │ ├── DerivCheck.m │ │ │ ├── DerivCheck_Elts.m │ │ │ ├── FFT2axis.m │ │ │ ├── FFT2matrix.m │ │ │ ├── FFT3axis.m │ │ │ ├── FFT3matrix.m │ │ │ ├── FFTaxis.m │ │ │ ├── FFTmatrix.m │ │ │ ├── HessCheck.m │ │ │ ├── HessCheck_Elts.m │ │ │ ├── NgridInit_freq_diag.m │ │ │ ├── NgridInit_pixel.m │ │ │ ├── compGriddedLE.m │ │ │ ├── finitediff.m │ │ │ ├── isdiag.m │ │ │ ├── logdet.m │ │ │ ├── logdetns.m │ │ │ ├── make1Fstim_1D.m │ │ │ ├── make1Fstim_2D.m │ │ │ ├── makeGabor.m │ │ │ ├── makeStimRows.m │ │ │ ├── normalizecols.m │ │ │ └── toeplitz2D.m │ ├── prior.py │ ├── ridge.py │ └── sta.py ├── lnb │ ├── __init__.py │ ├── base.py │ └── cbrf.py ├── lnp │ ├── __init__.py │ ├── base.py │ ├── glm.py │ ├── mid.py │ ├── setup.py │ └── sta.py ├── metrics.py ├── multilinear │ ├── __init__.py │ ├── context │ │ ├── __init__.py │ │ ├── als_dense.py │ │ ├── blas │ │ │ ├── blas.h │ │ │ ├── blasp.h │ │ │ ├── daxpy.c │ │ │ ├── ddot.c │ │ │ ├── dnrm2.c │ │ │ └── dscal.c │ │ ├── context.py │ │ ├── context_fast.c │ │ ├── context_fast.pyx │ │ ├── setup.py │ │ └── vb_dense.py │ ├── setup.py │ └── util.py ├── plotting.py ├── setup.py ├── simulate.py ├── transform │ ├── __init__.py │ ├── base.py │ ├── gabor.py │ ├── gammatone.py │ ├── modspec.py │ ├── setup.py │ ├── spectrogram.py │ ├── src │ │ └── gammatone │ │ │ └── README │ ├── wrap_gtfb.c │ ├── wrap_gtfb.pxd │ └── wrap_gtfb.pyx └── util.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arnefmeyer/lnpy/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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