├── .editorconfig ├── .github └── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── config.yml │ ├── documentation_improvement.md │ ├── feature_suggestion.md │ └── other.md ├── .gitignore ├── .readthedocs.yml ├── .travis.yml ├── AUTHORS.rst ├── CONTRIBUTING.rst ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── deepsurvk ├── __init__.py ├── applications │ └── recommender.py ├── cli.py ├── datasets │ ├── __init__.py │ └── data │ │ ├── README.md │ │ ├── metabric.h5 │ │ ├── rgbsg.h5 │ │ ├── simulated_gaussian.h5 │ │ ├── simulated_linear.h5 │ │ ├── simulated_treatment.h5 │ │ ├── support.h5 │ │ └── whas.h5 ├── deepsurvk.py ├── network │ ├── deepsurvk.py │ ├── optimization.py │ └── parameters.py ├── utils │ └── concordance.py ├── version.py └── visualization │ ├── dsk_metrics.py │ └── survival.py ├── docs ├── Makefile ├── api.rst ├── artwork │ └── logo.png ├── authors.rst ├── conf.py ├── contributing.rst ├── deepsurvk.datasets.rst ├── history.rst ├── index.rst ├── installation.rst ├── make.bat ├── readme.rst └── usage.rst ├── environment.yml ├── examples ├── 00_understanding_deepsurv.ipynb ├── 00_understanding_deepsurv.py ├── 01_deepsurvk_quickstart.ipynb ├── 01_deepsurvk_quickstart.py ├── 02_treatment_recommendation.ipynb ├── 02_treatment_recommendation.py ├── 03_parameter_optimization.ipynb └── 03_parameter_optimization.py ├── requirements ├── base_requirements.txt ├── dev_requirements.txt └── doc_requirements.txt ├── setup.cfg ├── setup.py ├── tests ├── __init__.py └── test_deepsurvk.py └── tox.ini /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arturomoncadatorres/deepsurvk/HEAD/.editorconfig -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- 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/tests/__init__.py: -------------------------------------------------------------------------------- 1 | """Unit test package for deepsurvk.""" 2 | -------------------------------------------------------------------------------- /tests/test_deepsurvk.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arturomoncadatorres/deepsurvk/HEAD/tests/test_deepsurvk.py -------------------------------------------------------------------------------- /tox.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/arturomoncadatorres/deepsurvk/HEAD/tox.ini --------------------------------------------------------------------------------