├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── example_input.csv ├── example_output.csv ├── hmmhc ├── __init__.py ├── cmdline.py ├── hmmhc.py ├── models │ ├── hmm-h2iab-iedb2018-binders.xml │ └── precent-rank-model-h2iab.npz ├── test │ ├── __init__.py │ ├── test_cmdline.py │ └── test_hmmhc.py └── version.py ├── requirements.txt └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/README.md -------------------------------------------------------------------------------- /example_input.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/example_input.csv -------------------------------------------------------------------------------- /example_output.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/example_output.csv -------------------------------------------------------------------------------- /hmmhc/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/__init__.py -------------------------------------------------------------------------------- /hmmhc/cmdline.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/cmdline.py -------------------------------------------------------------------------------- /hmmhc/hmmhc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/hmmhc.py -------------------------------------------------------------------------------- /hmmhc/models/hmm-h2iab-iedb2018-binders.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/models/hmm-h2iab-iedb2018-binders.xml -------------------------------------------------------------------------------- /hmmhc/models/precent-rank-model-h2iab.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/models/precent-rank-model-h2iab.npz -------------------------------------------------------------------------------- /hmmhc/test/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /hmmhc/test/test_cmdline.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/test/test_cmdline.py -------------------------------------------------------------------------------- /hmmhc/test/test_hmmhc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/hmmhc/test/test_hmmhc.py -------------------------------------------------------------------------------- /hmmhc/version.py: -------------------------------------------------------------------------------- 1 | __version__ = '0.1.0' 2 | -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/artyomovlab/hmmhc/HEAD/setup.py --------------------------------------------------------------------------------