├── Artwork ├── README.md └── #MILLIONS MISSING.jpg ├── README.md ├── cfs_me_testimony_2020.py ├── CFS_ME_Testimony_2020.ipynb └── LICENSE /Artwork/README.md: -------------------------------------------------------------------------------- 1 | CFS/ME Artowrk 2 | -------------------------------------------------------------------------------- /Artwork/#MILLIONS MISSING.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asigalov61/CFS-ME-Testimony-2020/main/Artwork/#MILLIONS MISSING.jpg -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | 2 | 3 | # CFS/ME Testimony 2020 4 | 5 | ## GPT2-774M model, fine-tuned on all public information and papers (up to 2021) related to Chronic Fatigue Syndrome/Myalgic Encephalomyelitis 6 | 7 | [![Open In Colab][colab-badge]][colab-notebook] 8 | 9 | [colab-notebook]: 10 | [colab-badge]: 11 | 12 | *** 13 | 14 | ### Please help spread awareness and please contribute to CFS/ME research if you can 15 | 16 | ### https://millionsmissing.meaction.net/ 17 | 18 | ### https://www.me-international.org/ 19 | 20 | ### https://me-pedia.org/wiki/Welcome_to_MEpedia 21 | 22 | ### Thank you 23 | 24 | *** 25 | 26 | ### Tegridy Code 2021 27 | -------------------------------------------------------------------------------- /cfs_me_testimony_2020.py: -------------------------------------------------------------------------------- 1 | # -*- coding: utf-8 -*- 2 | """CFS/ME_Testimony_2020 3 | 4 | Automatically generated by Colaboratory. 5 | 6 | Original file is located at 7 | https://colab.research.google.com/drive/1CgOb4VJqaGG2t-fR8qZqTesIw-G2EEwF 8 | 9 | # CFS/ME Testimony (2020 Edition) 10 | 11 | *** 12 | 13 | ## GPT2-774M model, fine-tuned on all public information and papers (up to 2021) related to Chronic Fatigue Syndrome/Myalgic Encephalomyelitis 14 | 15 | *** 16 | 17 | ### Project Los Angeles 18 | 19 | ### Tegridy Code 2021 20 | 21 | # Setup 22 | """ 23 | 24 | #@title Check GPU 25 | !nvidia-smi 26 | 27 | # Commented out IPython magic to ensure Python compatibility. 28 | #@title Setup environment 29 | # %tensorflow_version 1.x 30 | !pip install -q gpt-2-simple 31 | import gpt_2_simple as gpt2 32 | from datetime import datetime 33 | from google.colab import files 34 | 35 | # Commented out IPython magic to ensure Python compatibility. 36 | #@title Download and untar fine-tuned GPT2-774M model 37 | # %cd /content/ 38 | !wget --no-check-certificate -O CFSMETestimony2020.tar "https://onedrive.live.com/download?cid=8A0D502FC99C608F&resid=8A0D502FC99C608F%2118467&authkey=AL4M5qofOfArnoA" 39 | !tar -xvf /content/CFSMETestimony2020.tar 40 | 41 | #@title Load the model 42 | sess = gpt2.start_tf_sess() 43 | gpt2.load_gpt2(sess, run_name='CFSMETestimony') 44 | 45 | """# Generation""" 46 | 47 | #@title Talk to the model 48 | 49 | input_prompt = "What is the best possible treatment for CFS/ME? Thank you." #@param {type:"string"} 50 | desired_length_of_output_in_tokens = 1024 #@param {type:"slider", min:8, max:1024, step:8} 51 | creativity_temperature = 0.8 #@param {type:"slider", min:0.05, max:1, step:0.05} 52 | 53 | gpt2.generate(sess, 54 | run_name='CFSMETestimony', 55 | top_k=64, 56 | length=desired_length_of_output_in_tokens, 57 | temperature=creativity_temperature, 58 | prefix=input_prompt, 59 | nsamples=5, 60 | batch_size=5 61 | ) 62 | 63 | """# LICENSE 64 | 65 | MIT License 66 | 67 | Copyright (c) 2021 Project Los Angeles 68 | 69 | Permission is hereby granted, free of charge, to any person obtaining a copy 70 | of this software and associated documentation files (the "Software"), to deal 71 | in the Software without restriction, including without limitation the rights 72 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 73 | copies of the Software, and to permit persons to whom the Software is 74 | furnished to do so, subject to the following conditions: 75 | 76 | The above copyright notice and this permission notice shall be included in all 77 | copies or substantial portions of the Software. 78 | 79 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 80 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 81 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 82 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 83 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 84 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 85 | SOFTWARE. 86 | """ -------------------------------------------------------------------------------- /CFS_ME_Testimony_2020.ipynb: -------------------------------------------------------------------------------- 1 | { 2 | "nbformat": 4, 3 | "nbformat_minor": 0, 4 | "metadata": { 5 | "colab": { 6 | "name": "CFS/ME_Testimony_2020", 7 | "private_outputs": true, 8 | "provenance": [], 9 | "collapsed_sections": [], 10 | "machine_shape": "hm" 11 | }, 12 | "kernelspec": { 13 | "name": "python3", 14 | "display_name": "Python 3" 15 | }, 16 | "accelerator": "GPU" 17 | }, 18 | "cells": [ 19 | { 20 | "cell_type": "markdown", 21 | "metadata": { 22 | "id": "H7LoMj4GA4n_" 23 | }, 24 | "source": [ 25 | "# CFS/ME Testimony (2020 Edition)\n", 26 | "\n", 27 | "***\n", 28 | "\n", 29 | "## GPT2-774M model, fine-tuned on all public information and papers (up to 2021) related to Chronic Fatigue Syndrome/Myalgic Encephalomyelitis\n", 30 | "\n", 31 | "***\n", 32 | "\n", 33 | "### Project Los Angeles\n", 34 | "\n", 35 | "### Tegridy Code 2021\n" 36 | ] 37 | }, 38 | { 39 | "cell_type": "markdown", 40 | "metadata": { 41 | "id": "DPLwl0DtWmDw" 42 | }, 43 | "source": [ 44 | "# Setup" 45 | ] 46 | }, 47 | { 48 | "cell_type": "code", 49 | "metadata": { 50 | "id": "bH7rV3s4Rq0F", 51 | "cellView": "form" 52 | }, 53 | "source": [ 54 | "#@title Check GPU\n", 55 | "!nvidia-smi" 56 | ], 57 | "execution_count": null, 58 | "outputs": [] 59 | }, 60 | { 61 | "cell_type": "code", 62 | "metadata": { 63 | "id": "KBkpRgBCBS2_", 64 | "cellView": "form" 65 | }, 66 | "source": [ 67 | "#@title Setup environment\n", 68 | "%tensorflow_version 1.x\n", 69 | "!pip install -q gpt-2-simple\n", 70 | "import gpt_2_simple as gpt2\n", 71 | "from datetime import datetime\n", 72 | "from google.colab import files" 73 | ], 74 | "execution_count": null, 75 | "outputs": [] 76 | }, 77 | { 78 | "cell_type": "code", 79 | "metadata": { 80 | "id": "jnU17K7uSMOm", 81 | "cellView": "form" 82 | }, 83 | "source": [ 84 | "#@title Download and untar fine-tuned GPT2-774M model\n", 85 | "%cd /content/\n", 86 | "!wget --no-check-certificate -O CFSMETestimony2020.tar \"https://onedrive.live.com/download?cid=8A0D502FC99C608F&resid=8A0D502FC99C608F%2118467&authkey=AL4M5qofOfArnoA\"\n", 87 | "!tar -xvf /content/CFSMETestimony2020.tar" 88 | ], 89 | "execution_count": null, 90 | "outputs": [] 91 | }, 92 | { 93 | "cell_type": "code", 94 | "metadata": { 95 | "id": "-fxL77nvAMAX", 96 | "cellView": "form" 97 | }, 98 | "source": [ 99 | "#@title Load the model\n", 100 | "sess = gpt2.start_tf_sess()\n", 101 | "gpt2.load_gpt2(sess, run_name='CFSMETestimony')" 102 | ], 103 | "execution_count": null, 104 | "outputs": [] 105 | }, 106 | { 107 | "cell_type": "markdown", 108 | "metadata": { 109 | "id": "-NUNKpFOWohw" 110 | }, 111 | "source": [ 112 | "# Generation" 113 | ] 114 | }, 115 | { 116 | "cell_type": "code", 117 | "metadata": { 118 | "id": "8DKMc0fiej4N", 119 | "cellView": "form" 120 | }, 121 | "source": [ 122 | "#@title Talk to the model\n", 123 | "\n", 124 | "input_prompt = \"What is the best possible treatment for CFS/ME? Thank you.\" #@param {type:\"string\"}\n", 125 | "desired_length_of_output_in_tokens = 1024 #@param {type:\"slider\", min:8, max:1024, step:8}\n", 126 | "creativity_temperature = 0.8 #@param {type:\"slider\", min:0.05, max:1, step:0.05}\n", 127 | "\n", 128 | "gpt2.generate(sess,\n", 129 | " run_name='CFSMETestimony',\n", 130 | " top_k=64,\n", 131 | " length=desired_length_of_output_in_tokens,\n", 132 | " temperature=creativity_temperature,\n", 133 | " prefix=input_prompt,\n", 134 | " nsamples=5,\n", 135 | " batch_size=5\n", 136 | " )" 137 | ], 138 | "execution_count": null, 139 | "outputs": [] 140 | }, 141 | { 142 | "cell_type": "markdown", 143 | "metadata": { 144 | "id": "vfyhvNJ2WyeE" 145 | }, 146 | "source": [ 147 | "# LICENSE" 148 | ] 149 | }, 150 | { 151 | "cell_type": "markdown", 152 | "metadata": { 153 | "id": "wmTXWNUygS5E" 154 | }, 155 | "source": [ 156 | "MIT License\n", 157 | "\n", 158 | "Copyright (c) 2021 Project Los Angeles\n", 159 | "\n", 160 | "Permission is hereby granted, free of charge, to any person obtaining a copy\n", 161 | "of this software and associated documentation files (the \"Software\"), to deal\n", 162 | "in the Software without restriction, including without limitation the rights\n", 163 | "to use, copy, modify, merge, publish, distribute, sublicense, and/or sell\n", 164 | "copies of the Software, and to permit persons to whom the Software is\n", 165 | "furnished to do so, subject to the following conditions:\n", 166 | "\n", 167 | "The above copyright notice and this permission notice shall be included in all\n", 168 | "copies or substantial portions of the Software.\n", 169 | "\n", 170 | "THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n", 171 | "IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n", 172 | "FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\n", 173 | "AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n", 174 | "LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\n", 175 | "OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE\n", 176 | "SOFTWARE." 177 | ] 178 | } 179 | ] 180 | } -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | Apache License 2 | Version 2.0, January 2004 3 | http://www.apache.org/licenses/ 4 | 5 | TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 6 | 7 | 1. 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