├── LICENSE.txt ├── README.txt ├── tutorial3 ├── README.txt ├── step0 │ ├── .vmdrc │ └── step0.cpp ├── step1 │ ├── TpsSimulationPluginLibLMC.cpp │ ├── TpsSimulationPluginLibLMC.h │ └── step1.cpp ├── step2 │ ├── .vmdrc │ ├── TpsSimulationPluginLibLMC.cpp │ ├── TpsSimulationPluginLibLMC.h │ └── step2.cpp ├── step3 │ ├── .vmdrc │ ├── TpsSimulationPluginLibLMC.cpp │ ├── TpsSimulationPluginLibLMC.h │ └── step3.cpp ├── step4 │ ├── .vmdrc │ ├── TpsSimulationPluginLibLMC.cpp │ ├── TpsSimulationPluginLibLMC.h │ └── step4.cpp └── step5 │ ├── .vmdrc │ ├── committer.txt │ └── step5.cpp └── tutorial4 ├── README.txt ├── step0 ├── .vmdrc ├── isingnuc.cpp └── step0.cpp ├── step1 ├── .vmdrc ├── mbar-umbrella-sampling.py └── step1.cpp ├── step2 ├── .vmdrc ├── mbar-umbrella-sampling.py └── step2.cpp └── step3 ├── .vmdrc ├── mbar-umbrella-sampling.py └── step3.cpp /LICENSE.txt: -------------------------------------------------------------------------------- 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