├── .eslintignore ├── .eslintrc.js ├── .gitattributes ├── .gitignore ├── LICENSE ├── README.md ├── app ├── background.js └── preload.js ├── assets └── icons │ ├── icon.icns │ ├── icon.ico │ └── icon.png ├── css └── style.css ├── csv ├── legacy_graph.json ├── structure_graph.json └── structure_map.pkl ├── docs └── belljar_guide.pdf ├── forge.config.js ├── js ├── adjust.js ├── align.js ├── collate.js ├── count.js ├── detect.js ├── intensity.js ├── loading.js ├── log.js ├── max.js └── sharpen.js ├── legacy_atlas.nrrd ├── main.js ├── package.json ├── pages ├── adjust.html ├── align.html ├── collate.html ├── count.html ├── credits.html ├── depend.html ├── detect.html ├── index.html ├── intensity.html ├── loading.html ├── log.html ├── max.html ├── menu.html └── sharpen.html ├── py ├── adapt.py ├── adjust.py ├── belljarGUI.py ├── collate.py ├── convert_legacy.py ├── count.py ├── csv │ ├── legacy_graph.json │ └── structure_graph.json ├── deep_registration.py ├── demons.py ├── find_neurons.py 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