├── .gitignore ├── DSEImageDiag.sh ├── DSEvars.m ├── DVARSCalc.m ├── FDCalc.m ├── LICENSE ├── MovPartextImport.m ├── Nifti_Util ├── load_nii.m ├── load_nii_ext.m ├── load_nii_hdr.m ├── load_nii_img.m ├── load_untouch0_nii_hdr.m ├── load_untouch_header_only.m ├── load_untouch_nii.m ├── load_untouch_nii_hdr.m ├── load_untouch_nii_img.m ├── make_nii.m ├── save_nii.m ├── save_nii_ext.m ├── save_nii_hdr.m ├── save_untouch0_nii_hdr.m ├── save_untouch_header_only.m ├── save_untouch_nii.m ├── save_untouch_nii_hdr.m ├── save_untouch_slice.m └── verify_nii_ext.m ├── Octave ├── CleanNIFTI_octave.m ├── DSEvars_octave.m ├── DVARSCalc_octave.m └── Tests │ └── DVARSCalc_test_octave.m ├── Python ├── DSE.py ├── DSE_Demo.pkl ├── DSEnDVAR_Demo.py ├── DVARS_Demo.pkl ├── Demo │ ├── DSE │ │ └── VarTS │ │ │ ├── DSE_Avar_ts.txt │ │ │ ├── DSE_Dvar_ts.txt │ │ │ ├── DSE_Evar_ts.txt │ │ │ ├── DSE_Percents.txt │ │ │ ├── DSE_Relatives.txt │ │ │ ├── DSE_RootMeanOfSquares.txt │ │ │ ├── DSE_SumOfSquares.txt │ │ │ ├── DSE_Svar_ts.txt │ │ │ └── DSvars.png │ ├── DSE_Demo.pkl │ ├── DVARS_Demo.pkl │ ├── GS_Demo.pkl │ └── MatlabTest │ │ ├── DSE │ │ └── VarTS │ │ │ ├── DSE_Avar_ts.txt │ │ │ ├── DSE_Dvar_ts.txt │ │ │ ├── DSE_Evar_ts.txt │ │ │ ├── DSE_Percents.txt │ │ │ ├── DSE_Relatives.txt │ │ │ ├── DSE_RootMeanOfSquares.txt │ │ │ ├── DSE_SumOfSquares.txt │ │ │ ├── DSE_Svar_ts.txt │ │ │ └── DSvars.png │ │ └── Mattests.m ├── GS_Demo.pkl └── README.md ├── README.md ├── fMRIDiag_115320.png ├── fMRIDiag_WorkBench.m ├── fMRIDiag_plot.m └── mis ├── ButterFilt.m ├── CleanNIFTI.m ├── CleanNIFTI_fsl.m ├── CleanNIFTI_fsl_test.m ├── DVARS_IQR.m ├── FitMeLine.m ├── GSRme.m ├── MassAC.m ├── Plot_fft.m ├── RegDVARS.m └── fsl_bptf.m /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/.gitignore -------------------------------------------------------------------------------- /DSEImageDiag.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/DSEImageDiag.sh -------------------------------------------------------------------------------- /DSEvars.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/DSEvars.m -------------------------------------------------------------------------------- /DVARSCalc.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/DVARSCalc.m -------------------------------------------------------------------------------- /FDCalc.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/FDCalc.m -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/LICENSE -------------------------------------------------------------------------------- /MovPartextImport.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/MovPartextImport.m -------------------------------------------------------------------------------- /Nifti_Util/load_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_nii.m -------------------------------------------------------------------------------- /Nifti_Util/load_nii_ext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_nii_ext.m -------------------------------------------------------------------------------- /Nifti_Util/load_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_nii_hdr.m -------------------------------------------------------------------------------- /Nifti_Util/load_nii_img.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_nii_img.m -------------------------------------------------------------------------------- /Nifti_Util/load_untouch0_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_untouch0_nii_hdr.m -------------------------------------------------------------------------------- /Nifti_Util/load_untouch_header_only.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_untouch_header_only.m -------------------------------------------------------------------------------- /Nifti_Util/load_untouch_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_untouch_nii.m -------------------------------------------------------------------------------- /Nifti_Util/load_untouch_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_untouch_nii_hdr.m -------------------------------------------------------------------------------- /Nifti_Util/load_untouch_nii_img.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/load_untouch_nii_img.m -------------------------------------------------------------------------------- /Nifti_Util/make_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/make_nii.m -------------------------------------------------------------------------------- /Nifti_Util/save_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_nii.m -------------------------------------------------------------------------------- /Nifti_Util/save_nii_ext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_nii_ext.m -------------------------------------------------------------------------------- /Nifti_Util/save_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_nii_hdr.m -------------------------------------------------------------------------------- /Nifti_Util/save_untouch0_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_untouch0_nii_hdr.m -------------------------------------------------------------------------------- /Nifti_Util/save_untouch_header_only.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_untouch_header_only.m -------------------------------------------------------------------------------- /Nifti_Util/save_untouch_nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_untouch_nii.m -------------------------------------------------------------------------------- /Nifti_Util/save_untouch_nii_hdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_untouch_nii_hdr.m -------------------------------------------------------------------------------- /Nifti_Util/save_untouch_slice.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/save_untouch_slice.m -------------------------------------------------------------------------------- /Nifti_Util/verify_nii_ext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Nifti_Util/verify_nii_ext.m -------------------------------------------------------------------------------- /Octave/CleanNIFTI_octave.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Octave/CleanNIFTI_octave.m -------------------------------------------------------------------------------- /Octave/DSEvars_octave.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Octave/DSEvars_octave.m -------------------------------------------------------------------------------- /Octave/DVARSCalc_octave.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Octave/DVARSCalc_octave.m -------------------------------------------------------------------------------- /Octave/Tests/DVARSCalc_test_octave.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Octave/Tests/DVARSCalc_test_octave.m -------------------------------------------------------------------------------- /Python/DSE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/DSE.py -------------------------------------------------------------------------------- /Python/DSE_Demo.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/DSE_Demo.pkl -------------------------------------------------------------------------------- /Python/DSEnDVAR_Demo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/DSEnDVAR_Demo.py -------------------------------------------------------------------------------- /Python/DVARS_Demo.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/DVARS_Demo.pkl -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_Avar_ts.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_Avar_ts.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_Dvar_ts.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_Dvar_ts.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_Evar_ts.txt: -------------------------------------------------------------------------------- 1 | 6.34352 2 | 5.58454 3 | -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_Percents.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_Percents.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_Relatives.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_Relatives.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_RootMeanOfSquares.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_RootMeanOfSquares.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_SumOfSquares.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_SumOfSquares.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSE_Svar_ts.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSE_Svar_ts.txt -------------------------------------------------------------------------------- /Python/Demo/DSE/VarTS/DSvars.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE/VarTS/DSvars.png -------------------------------------------------------------------------------- /Python/Demo/DSE_Demo.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DSE_Demo.pkl -------------------------------------------------------------------------------- /Python/Demo/DVARS_Demo.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/DVARS_Demo.pkl -------------------------------------------------------------------------------- /Python/Demo/GS_Demo.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/GS_Demo.pkl -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_Avar_ts.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_Avar_ts.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_Dvar_ts.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_Dvar_ts.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_Evar_ts.txt: -------------------------------------------------------------------------------- 1 | 6.34352 2 | 5.58454 3 | -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_Percents.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_Percents.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_Relatives.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_Relatives.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_RootMeanOfSquares.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_RootMeanOfSquares.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_SumOfSquares.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_SumOfSquares.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSE_Svar_ts.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSE_Svar_ts.txt -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/DSE/VarTS/DSvars.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/DSE/VarTS/DSvars.png -------------------------------------------------------------------------------- /Python/Demo/MatlabTest/Mattests.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/Demo/MatlabTest/Mattests.m -------------------------------------------------------------------------------- /Python/GS_Demo.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/GS_Demo.pkl -------------------------------------------------------------------------------- /Python/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/Python/README.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/README.md -------------------------------------------------------------------------------- /fMRIDiag_115320.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/fMRIDiag_115320.png -------------------------------------------------------------------------------- /fMRIDiag_WorkBench.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/fMRIDiag_WorkBench.m -------------------------------------------------------------------------------- /fMRIDiag_plot.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/fMRIDiag_plot.m -------------------------------------------------------------------------------- /mis/ButterFilt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/ButterFilt.m -------------------------------------------------------------------------------- /mis/CleanNIFTI.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/CleanNIFTI.m -------------------------------------------------------------------------------- /mis/CleanNIFTI_fsl.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/CleanNIFTI_fsl.m -------------------------------------------------------------------------------- /mis/CleanNIFTI_fsl_test.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/CleanNIFTI_fsl_test.m -------------------------------------------------------------------------------- /mis/DVARS_IQR.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/DVARS_IQR.m -------------------------------------------------------------------------------- /mis/FitMeLine.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/FitMeLine.m -------------------------------------------------------------------------------- /mis/GSRme.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/GSRme.m -------------------------------------------------------------------------------- /mis/MassAC.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/MassAC.m -------------------------------------------------------------------------------- /mis/Plot_fft.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/Plot_fft.m -------------------------------------------------------------------------------- /mis/RegDVARS.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/RegDVARS.m -------------------------------------------------------------------------------- /mis/fsl_bptf.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/asoroosh/DVARS/HEAD/mis/fsl_bptf.m --------------------------------------------------------------------------------