├── Compare_barcodes_manual.pdf ├── Conventional_barcoding_manual.pdf ├── Dataset_accessibility_and_descriptions.docx ├── ONTBarcoder_manual.pdf ├── ONTbarcoder.py ├── ONTbarcoder2.py ├── ONTbarcoder_multiprocessing.py ├── README.md ├── Realtime_barcoding_manual.pdf ├── replace_efpq.py └── samples ├── Comparisonsexamples ├── DatasetA_references.fa └── Filtered_barcodes_1percamb_upto5err.fa ├── MixedDipteraSubsample_demfile ├── Sample_Main_barcode_results ├── 11to15errors.zip ├── 6to10errors.zip ├── Allbarcodes.fa ├── Filtered.zip ├── Fixed_barcodes_16to20err.fa ├── Fixed_barcodes_1to5err.fa ├── Fixed_barcodes_6to10err.fa ├── Over16errors.zip ├── QC_Compliant_barcodes_noamb_noerr.fa └── Remaining.zip ├── Sample_Outputtable.csv ├── Sample_runsummary.xlsx ├── Sample_statsfile.csv └── consensus_inputforcorrection.fa /Compare_barcodes_manual.pdf: -------------------------------------------------------------------------------- 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