├── .gitignore ├── LICENSE ├── README.md ├── phackR ├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R │ ├── combinedStrategies_regression.R │ ├── combinedStrategies_ttest.R │ ├── compositeScores.R │ ├── exploitCovariates.R │ ├── exploitCutoffs.R │ ├── favorableImputation.R │ ├── helpers.R │ ├── incorrectRounding.R │ ├── optionalStopping.R │ ├── outlierExclusion.R │ ├── plotsShiny.R │ ├── runShinyPHack.R │ ├── selectiveReportingDV.R │ ├── selectiveReportingIV.R │ ├── statAnalysis.R │ ├── subgroupAnalysis.R │ └── variableTransformation.R ├── doc │ ├── phackR_vignette.R │ ├── phackR_vignette.Rmd │ └── phackR_vignette.html ├── inst │ ├── shiny-phack │ │ └── ShinyPHack │ │ │ ├── data │ │ │ └── startplots.rds │ │ │ ├── mddoc │ │ │ ├── 01_CompScores.md │ │ │ ├── 02_ExploitCovariates.md │ │ │ ├── 03_ExploitCutoffs.md │ │ │ ├── 04_FavorableImputation.md │ │ │ ├── 05_IncorrectRounding.md │ │ │ ├── 06_OptionalStopping.md │ │ │ ├── 07_OutlierExclusion.md │ │ │ ├── 09_SelectiveReportingDV.md │ │ │ ├── 10_SelectiveReportingIV.md │ │ │ ├── 11_StatAnalysis.md │ │ │ ├── 12_SubgroupAnalysis.md │ │ │ ├── 13_VariableTransformation.md │ │ │ └── landingPage.md │ │ │ ├── server.R │ │ │ └── ui.R │ └── sim_startplots_Shiny.R ├── man │ ├── dot-compCohensD.Rd │ ├── dot-compR2t.Rd │ ├── dot-compscoreHack.Rd │ ├── dot-covhack.Rd │ ├── dot-cutoffHack.Rd │ ├── dot-easyimpute.Rd │ ├── dot-estimate_mode.Rd │ ├── dot-extractoutlier.Rd │ ├── dot-impHack.Rd │ ├── dot-multDVhack.Rd │ ├── dot-multIVhack_reg.Rd │ ├── dot-multIVhack_ttest.Rd │ ├── dot-optstop.Rd │ ├── dot-out.boxplot.Rd │ ├── dot-out.cook.Rd │ ├── dot-out.covratio.Rd │ ├── dot-out.dfbeta.Rd │ ├── dot-out.dffits.Rd │ ├── dot-out.leverage.Rd │ ├── dot-out.mahalanobis.Rd │ ├── dot-out.percentrule.Rd │ ├── dot-out.residual.Rd │ ├── dot-out.sdrule.Rd │ ├── dot-out.stemleaf.Rd │ ├── dot-outHack.Rd │ ├── dot-roundhack.Rd │ ├── dot-selectpvalue.Rd │ ├── dot-sim.compscore.Rd │ ├── dot-sim.covariates.Rd │ ├── dot-sim.data.Rd │ ├── dot-sim.multDV.Rd │ ├── dot-sim.multIV.Rd │ ├── dot-sim.multcor.Rd │ ├── dot-sim.subgroup.Rd │ ├── dot-statAnalysisHack.Rd │ ├── dot-subgroupHack.Rd │ ├── dot-varTransHack.Rd │ ├── esplots.Rd │ ├── pplots.Rd │ ├── runShinyPHack.Rd │ ├── sim.compscoreHack.Rd │ ├── sim.covhack.Rd │ ├── sim.cutoffHack.Rd │ ├── sim.impHack.Rd │ ├── sim.multDVhack.Rd │ ├── sim.multIVhack.Rd │ ├── sim.optstop.Rd │ ├── sim.outHack.Rd │ ├── sim.roundhack.Rd │ ├── sim.statAnalysisHack.Rd │ ├── sim.subgroupHack.Rd │ └── sim.varTransHack.Rd ├── phackR.Rproj ├── tests │ ├── testthat.R │ └── testthat │ │ └── test-simfunctions.R └── vignettes │ ├── .gitignore │ └── phackR_vignette.Rmd ├── phacking_compendium.Rproj └── simulations ├── 00_simulation_helpers.R ├── combinedStrategies_simulation.R ├── compscoreHack_simulation.R ├── covhack_simulation.R ├── cutoffHack_simulation.R ├── exploreNormality.R ├── impHack_simulation.R ├── multDVhack_simulation.R ├── multIVHack_simulation.R ├── optstop_simulation.R ├── outHack_simulation.R ├── plot_BFdist.R ├── plot_ESDist.R ├── plot_FPcombined.R ├── plot_pCurve.R ├── plot_redefineSig.R ├── plots_FPrate.R ├── roundHack_simulation.R ├── statAnalysisHack_simulation.R ├── subgroupHack_simulation.R └── varTransHack_simulation.R /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/astefan1/phacking_compendium/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/astefan1/phacking_compendium/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/astefan1/phacking_compendium/HEAD/README.md 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