├── .bashrc ├── .gitignore ├── LICENSE ├── README.md ├── gen_mqpar.py ├── generated_scripts ├── ps103f.sh └── ps103f_varTMT.sh ├── modifications.xml └── templates ├── SILAC.xml ├── SILAC_varTMT.xml ├── TMT_11plex.xml ├── labelfree.xml └── yeast_labelfree.xml /.bashrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/.bashrc -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/README.md -------------------------------------------------------------------------------- /gen_mqpar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/gen_mqpar.py -------------------------------------------------------------------------------- /generated_scripts/ps103f.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/generated_scripts/ps103f.sh -------------------------------------------------------------------------------- /generated_scripts/ps103f_varTMT.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/generated_scripts/ps103f_varTMT.sh -------------------------------------------------------------------------------- /modifications.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/modifications.xml -------------------------------------------------------------------------------- /templates/SILAC.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/templates/SILAC.xml -------------------------------------------------------------------------------- /templates/SILAC_varTMT.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/templates/SILAC_varTMT.xml -------------------------------------------------------------------------------- /templates/TMT_11plex.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/templates/TMT_11plex.xml -------------------------------------------------------------------------------- /templates/labelfree.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/templates/labelfree.xml -------------------------------------------------------------------------------- /templates/yeast_labelfree.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atc3/maxquant_linux_guide/HEAD/templates/yeast_labelfree.xml --------------------------------------------------------------------------------