├── LICENSE.txt ├── README.md ├── bowtie2convert.cpp ├── bowtieconvert.cpp ├── cgal.h ├── fastalib.h ├── makefile ├── pAlign.cpp ├── runCombined ├── runSwalo ├── runSwalo_bowtie ├── swalo-0.9.5.cpp ├── swalo.cpp ├── swalo_file.cpp ├── swsse2.h └── swstriped.h /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/README.md -------------------------------------------------------------------------------- /bowtie2convert.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/bowtie2convert.cpp -------------------------------------------------------------------------------- /bowtieconvert.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/bowtieconvert.cpp -------------------------------------------------------------------------------- /cgal.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/cgal.h -------------------------------------------------------------------------------- /fastalib.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/fastalib.h -------------------------------------------------------------------------------- /makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/makefile -------------------------------------------------------------------------------- /pAlign.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/pAlign.cpp -------------------------------------------------------------------------------- /runCombined: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/runCombined -------------------------------------------------------------------------------- /runSwalo: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/runSwalo -------------------------------------------------------------------------------- /runSwalo_bowtie: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/runSwalo_bowtie -------------------------------------------------------------------------------- /swalo-0.9.5.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/swalo-0.9.5.cpp -------------------------------------------------------------------------------- /swalo.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/swalo.cpp -------------------------------------------------------------------------------- /swalo_file.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/swalo_file.cpp -------------------------------------------------------------------------------- /swsse2.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/swsse2.h -------------------------------------------------------------------------------- /swstriped.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atifrahman/SWALO/HEAD/swstriped.h --------------------------------------------------------------------------------