├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── code-quality-main.yaml │ ├── code-quality-pr.yaml │ ├── python-publish.yml │ └── run-tests.yaml ├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE ├── MultiscaleEMD ├── __init__.py ├── convolutional_sinkhorn.py ├── dataset.py ├── diffusion_emd.py ├── emd.py ├── estimate_utils.py ├── metric_tree.py ├── tree.py └── version.py ├── README.rst ├── comparison ├── compare.py ├── diffusion_emd.py ├── methods.py ├── phemd.py └── tree_dataset_generate.ipynb ├── notebooks ├── DiffusionEMD-Line-Example.ipynb ├── DiffusionEMD-Swissroll-Example.ipynb ├── Trellis-Embedding-Comparison.ipynb ├── comparison_analysis-Copy1.ipynb └── comparison_analysis.ipynb ├── requirements.txt ├── setup.cfg ├── setup.py └── tests └── test_tree.py /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/ISSUE_TEMPLATE/feature_request.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/workflows/code-quality-main.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/workflows/code-quality-main.yaml -------------------------------------------------------------------------------- /.github/workflows/code-quality-pr.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/workflows/code-quality-pr.yaml -------------------------------------------------------------------------------- /.github/workflows/python-publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/workflows/python-publish.yml -------------------------------------------------------------------------------- /.github/workflows/run-tests.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.github/workflows/run-tests.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.gitignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/LICENSE -------------------------------------------------------------------------------- /MultiscaleEMD/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/__init__.py -------------------------------------------------------------------------------- /MultiscaleEMD/convolutional_sinkhorn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/convolutional_sinkhorn.py -------------------------------------------------------------------------------- /MultiscaleEMD/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/dataset.py -------------------------------------------------------------------------------- /MultiscaleEMD/diffusion_emd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/diffusion_emd.py -------------------------------------------------------------------------------- /MultiscaleEMD/emd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/emd.py -------------------------------------------------------------------------------- /MultiscaleEMD/estimate_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/estimate_utils.py -------------------------------------------------------------------------------- /MultiscaleEMD/metric_tree.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/metric_tree.py -------------------------------------------------------------------------------- /MultiscaleEMD/tree.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/MultiscaleEMD/tree.py -------------------------------------------------------------------------------- /MultiscaleEMD/version.py: -------------------------------------------------------------------------------- 1 | __version__ = "1.1.1" 2 | -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/README.rst -------------------------------------------------------------------------------- /comparison/compare.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/comparison/compare.py -------------------------------------------------------------------------------- /comparison/diffusion_emd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/comparison/diffusion_emd.py -------------------------------------------------------------------------------- /comparison/methods.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/comparison/methods.py -------------------------------------------------------------------------------- /comparison/phemd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/comparison/phemd.py -------------------------------------------------------------------------------- /comparison/tree_dataset_generate.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/comparison/tree_dataset_generate.ipynb -------------------------------------------------------------------------------- /notebooks/DiffusionEMD-Line-Example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/notebooks/DiffusionEMD-Line-Example.ipynb -------------------------------------------------------------------------------- /notebooks/DiffusionEMD-Swissroll-Example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/notebooks/DiffusionEMD-Swissroll-Example.ipynb -------------------------------------------------------------------------------- /notebooks/Trellis-Embedding-Comparison.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/notebooks/Trellis-Embedding-Comparison.ipynb -------------------------------------------------------------------------------- /notebooks/comparison_analysis-Copy1.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/notebooks/comparison_analysis-Copy1.ipynb -------------------------------------------------------------------------------- /notebooks/comparison_analysis.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/notebooks/comparison_analysis.ipynb -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/setup.py -------------------------------------------------------------------------------- /tests/test_tree.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/atong01/MultiscaleEMD/HEAD/tests/test_tree.py --------------------------------------------------------------------------------