├── Achitecture.png ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── Dockerfile ├── LICENSE ├── README.md ├── cameo ├── Dockerfile ├── build.sh ├── cameo-fastas │ ├── Dockerfile │ ├── build.sh │ ├── create-temp-fasta-files.py │ ├── push.sh │ ├── rerun.sh │ └── temp-fasta.yaml ├── cameo-time-taken │ ├── Dockerfile │ ├── build.sh │ ├── measure_time.py │ ├── push.sh │ └── temp-fasta.yaml ├── cameo_protein_targets.fasta ├── inference-tests │ ├── Dockerfile │ ├── build.sh │ ├── cameo-inference-test.py │ ├── cameo-inference.yaml │ └── push.sh ├── precompute_alignments.py ├── push.sh ├── requirements.txt ├── rerun.sh ├── run-cameo.yaml ├── run-grid.py └── run.sh ├── deploy.sh ├── deploy ├── generate-yaml.sh ├── gpu-yaml.template └── run.sh ├── docker.properties ├── download-openfold-data ├── Dockerfile ├── build.sh ├── data-prep.sh ├── fsx-data-prep-pod.yaml ├── push.sh ├── rerun.sh └── scripts │ ├── download_alphafold_params_s3.sh │ ├── download_bfd_s3.sh │ ├── download_mgnify_s3.sh │ ├── 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