├── AMI ├── alinux.sh └── ubuntu.sh ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── NOTICE ├── README-en.md ├── README.md ├── doc └── 01.migrate │ ├── README-en.md │ └── README.md ├── example ├── cromwell │ ├── README.md │ ├── conf │ │ ├── sge.conf │ │ └── slurm.conf │ ├── input.json │ └── test.wdl ├── nextflow │ ├── README.md │ ├── custom.conf │ └── genome.nf └── shell │ ├── README.md │ ├── command.sh │ └── run.sh ├── images ├── 1.png ├── 10.png ├── 11.png ├── 2.png ├── 3.png ├── 4.png ├── 5.png ├── 6.png ├── 7.png ├── 8.png └── 9.png └── tools └── gh-md-toc └── gh-md-toc /AMI/alinux.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/awslabs/aws-parallelcluster-pipeline-gatk-quick-start/HEAD/AMI/alinux.sh -------------------------------------------------------------------------------- /AMI/ubuntu.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/awslabs/aws-parallelcluster-pipeline-gatk-quick-start/HEAD/AMI/ubuntu.sh -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/awslabs/aws-parallelcluster-pipeline-gatk-quick-start/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/awslabs/aws-parallelcluster-pipeline-gatk-quick-start/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/awslabs/aws-parallelcluster-pipeline-gatk-quick-start/HEAD/LICENSE -------------------------------------------------------------------------------- /NOTICE: -------------------------------------------------------------------------------- 1 | Copyright 2019 Amazon.com, Inc. or its affiliates. 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