├── .gitignore ├── README.md ├── baselines ├── Copilot │ ├── README.md │ ├── api.py │ ├── output │ │ ├── APPS │ │ │ ├── completion_0.pkl │ │ │ ├── completion_1.pkl │ │ │ ├── completion_2.pkl │ │ │ ├── completion_3.pkl │ │ │ ├── completion_4.pkl │ │ │ ├── prediction_from_file_rank0_multi0.log │ │ │ ├── prediction_from_file_rank0_single3.log │ │ │ └── prediction_from_file_rank0_single5.log │ │ ├── HumanEval │ │ │ ├── completion_0.pkl │ │ │ ├── completion_1.pkl │ │ │ ├── completion_2.pkl │ │ │ ├── completion_3.pkl │ │ │ ├── completion_4.pkl │ │ │ ├── prediction_from_file_rank0_multi0.log │ │ │ ├── prediction_from_file_rank0_single3.log │ │ │ └── prediction_from_file_rank0_single5.log │ │ └── MBPP │ │ │ ├── completion_0.pkl │ │ │ ├── completion_1.pkl │ │ │ ├── completion_2.pkl │ │ │ ├── completion_3.pkl │ │ │ ├── completion_4.pkl │ │ │ ├── prediction_from_file_rank0_multi0.log │ │ │ ├── prediction_from_file_rank0_single3.log │ │ │ └── prediction_from_file_rank0_single5.log │ ├── query_apps.py │ ├── query_humaneval.py │ └── query_mbpp.py ├── Finetune CodeT5 │ ├── README.md │ └── output │ │ ├── APPS │ │ ├── prediction-5_beam.pkl │ │ └── prediction_from_file.log │ │ ├── HumanEval │ │ ├── prediction-5_beam300_full.pkl │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ └── prediction_from_file_rank0_single5.log │ │ └── MBPP │ │ ├── prediction-5_beam300_full.pkl │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ └── prediction_from_file_rank0_single5.log ├── GPT-3.5 │ ├── OpenAI.py │ └── output │ │ ├── APPS │ │ ├── openai_gpt35_apps_testcase_n5_seed42_0613_executable.json │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ ├── prediction_from_file_rank0_single5.log │ │ ├── prediction_from_file_rank1_multi0.log │ │ ├── prediction_from_file_rank1_single3.log │ │ ├── prediction_from_file_rank1_single5.log │ │ ├── prediction_from_file_rank2_multi0.log │ │ ├── prediction_from_file_rank2_single3.log │ │ ├── prediction_from_file_rank2_single5.log │ │ ├── prediction_from_file_rank3_multi0.log │ │ ├── prediction_from_file_rank3_single3.log │ │ ├── prediction_from_file_rank3_single5.log │ │ ├── prediction_from_file_rank4_multi0.log │ │ ├── prediction_from_file_rank4_single3.log │ │ └── prediction_from_file_rank4_single5.log │ │ ├── HumanEval │ │ ├── openai_gpt35_humaneval_testcase_n5_seed42_1106_full.json │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ ├── prediction_from_file_rank0_single5.log │ │ ├── prediction_from_file_rank1_multi0.log │ │ ├── prediction_from_file_rank1_single3.log │ │ ├── prediction_from_file_rank1_single5.log │ │ ├── prediction_from_file_rank2_multi0.log │ │ ├── prediction_from_file_rank2_single3.log │ │ ├── prediction_from_file_rank2_single5.log │ │ ├── prediction_from_file_rank3_multi0.log │ │ ├── prediction_from_file_rank3_single3.log │ │ ├── prediction_from_file_rank3_single5.log │ │ ├── prediction_from_file_rank4_multi0.log │ │ ├── prediction_from_file_rank4_single3.log │ │ └── prediction_from_file_rank4_single5.log │ │ └── MBPP │ │ ├── openai_gpt35_mbpp_testcase_n5_seed42_1106_full.json │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ ├── prediction_from_file_rank0_single5.log │ │ ├── prediction_from_file_rank1_multi0.log │ │ ├── prediction_from_file_rank1_single3.log │ │ ├── prediction_from_file_rank1_single5.log │ │ ├── prediction_from_file_rank2_multi0.log │ │ ├── prediction_from_file_rank2_single3.log │ │ ├── prediction_from_file_rank2_single5.log │ │ ├── prediction_from_file_rank3_multi0.log │ │ ├── prediction_from_file_rank3_single3.log │ │ ├── prediction_from_file_rank3_single5.log │ │ ├── prediction_from_file_rank4_multi0.log │ │ ├── prediction_from_file_rank4_single3.log │ │ └── prediction_from_file_rank4_single5.log ├── InCoder │ ├── InCoder-6B.py │ └── output │ │ ├── APPS │ │ ├── incoder-6B_apps_testcase_beam_executable.json │ │ └── prediction_from_file.log │ │ ├── HumanEval │ │ ├── incoder-6B_humaneval_testcase_beam_full.json │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ └── prediction_from_file_rank0_single5.log │ │ └── MBPP │ │ ├── incoder-6B_mbpp_testcase_beam_full.json │ │ ├── prediction_from_file_rank0_multi0.log │ │ ├── prediction_from_file_rank0_single3.log │ │ └── prediction_from_file_rank0_single5.log ├── Pynguin │ ├── 1_arrange_datasets.ipynb │ ├── 2_pynguin_apps.sh │ ├── 2_pynguin_humaneval.sh │ ├── 2_pynguin_mbpp.sh │ ├── README.md │ ├── coverage_note.txt │ ├── evaluate_results_pynguin.ipynb │ └── output │ │ ├── HumanEval │ │ ├── coverage_humaneval_3.json │ │ ├── coverage_humaneval_5.json │ │ ├── coverage_humaneval_perfect.json │ │ ├── mutation_humaneval.sh │ │ ├── mutation_humaneval_3.txt │ │ ├── mutation_humaneval_5.txt │ │ └── mutation_humaneval_perfect.txt │ │ └── MBPP │ │ ├── coverage_mbpp_3.json │ │ ├── coverage_mbpp_5.json │ │ ├── coverage_mbpp_perfect.json │ │ ├── mutation_mbpp.sh │ │ ├── mutation_mbpp_3.txt │ │ ├── mutation_mbpp_5.txt │ │ └── mutation_mbpp_perfect.txt └── StarCoder │ ├── StarCoder.py │ └── output │ ├── APPS │ ├── prediction_from_file.log │ └── starcoder_apps_testcase_beam_executable.json │ ├── HumanEval │ ├── prediction_from_file_rank0_multi0.log │ ├── prediction_from_file_rank0_single3.log │ ├── prediction_from_file_rank0_single5.log │ └── starcoder_humaneval_testcase_beam_full.json │ └── MBPP │ ├── prediction_from_file_rank0_multi0.log │ ├── prediction_from_file_rank0_single3.log │ ├── prediction_from_file_rank0_single5.log │ └── starcoder_mbpp_testcase_beam_full.json ├── datasets ├── HumanEval │ └── humaneval_test.csv └── MBPP │ └── mbpp_test.csv ├── evaluation.py ├── finetuning.py ├── handlers ├── __init__.py ├── code_processing.py ├── literals.json ├── python_terminal_command.py 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