├── LICENSE ├── README.md ├── easyTCGA ├── 1行代码提取6种TCGA表达矩阵和临床信息.md ├── 1行代码提取表达矩阵2.0版本.md ├── 1行代码整理泛癌数据.md ├── easyTCGA1行代码下载基因表达数据.md ├── easyTCGA可视化函数.md └── 任意基因在泛癌的表达量展示.md ├── tcga ├── 000tcga合集链接.md ├── 1万个基因批量wilcox检验.md ├── 1行代码计算肿瘤突变负荷.md ├── DEseq2差异分析及vst探索.md ├── TCGA官网下载文件数量和tcgabiolinks下载的不一致.md ├── countstpmfpkmvstcpm表达量差异.md ├── ggplot2可视化CNV_gistic_score.md ├── ggplot绘制突变全景图.md ├── gistic2安装使用.md ├── tcga+gtex联合数据.md ├── tcgabiolinks00数据下载.md ├── tcgabiolinks01表达矩阵提取.md ├── tcgabiolinks02差异分析.md ├── tcgabiolinks03富集分析和生存分析.md ├── tcgabiolinks04手动整理表达矩阵.md ├── tcgabiolinks05下载和整理MAF.md ├── tcgabiolinks06不同癌种数据合并（上）.md ├── tcgabiolinks07snp和临床信息制作.md ├── tcgabiolinks08：甲基化.md ├── tcgabiolinks10：可视化.md ├── tcgabiolinks11不同癌种数据合并（下）.md ├── tcga又㕛叒叕更新了！.md ├── tcga批量差异分析可视化.md ├── 批量生存分析.md ├── 批量生存分析for循环.md └── 最适合初学者的tcga下载教程.md ├── 单细胞 ├── 单细胞入门之Seurat标准流程.md ├── 单细胞入门之多样本整合.md └── 单细胞入门之细胞类型鉴定.md ├── 常见分析 ├── 0001combat去批次.md ├── 0002免疫浸润一致性聚类.md ├── 0003ImmLnc和ImmReLnc识别免疫相关lncRNA.md ├── 0004wgcna识别免疫相关lncRNA.md ├── GSEA富集分析可视化.md ├── GSVA和ssGSEA.md ├── Goplot富集分析可视化.md ├── GseaVis富集分析可视化.md ├── IOBR.md ├── MOVICS.md ├── SIC图表学习01.md ├── WGCNA分类变量处理.md ├── WGCNA注意事项.md ├── enrichplot富集分析可视化.md ├── limma差异分析谁比谁很重要吗.md ├── simplifyEnrichment简化富集分析结果.md ├── tinyarray.md ├── 单基因富集分析.md ├── 单基因富集分析之火山图和热图.md ├── 富集分析常见类型.md ├── 常见镜像设置.md ├── 手动计算logFC.md ├── 生信初学者资源推荐.md └── 药物敏感性分析.md └── 甲基化 ├── champ_IDAT.md ├── champ_betaMatrix.md ├── champ_coread.md └── minfi.md /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ayueme/R_bioinformatics/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ayueme/R_bioinformatics/HEAD/README.md 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