├── .pre-commit-config.yaml ├── README.md ├── decipher ├── __init__.py ├── plot │ ├── __init__.py │ ├── basis_decomposition.py │ ├── decipher.py │ ├── trajectory_inference.py │ └── utils.py ├── tools │ ├── __init__.py │ ├── _basis_decomposition │ │ ├── __init__.py │ │ ├── inference.py │ │ ├── model.py │ │ └── run.py │ ├── _decipher │ │ ├── __init__.py │ │ ├── data.py │ │ ├── decipher.py │ │ └── module.py │ ├── basis_decomposition.py │ ├── decipher.py │ ├── trajectory_inference.py │ └── utils.py └── utils.py ├── examples └── 1-tutorial.ipynb ├── figures └── logo_decipher.png └── pyproject.toml /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/azizilab/decipher/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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