├── .github ├── FUNDING.yml └── workflows │ ├── deploy.yml │ ├── deploy_test.yml │ ├── generate_documentation.yml │ ├── numpy_version.py │ └── pull_request_test.yml ├── .gitignore ├── CMakeLists.txt ├── LICENSE ├── MANIFEST.in ├── README.kr.rst ├── README.rst ├── benchmark.py ├── document ├── document_header.html └── pdoc_localization.sh ├── examples ├── coherence.py ├── corpus_and_inference.py ├── corpus_and_labeling.py ├── ctm_network.py ├── dmr_multi_label.py ├── dmr_plot.py ├── dtm.py ├── extract_ngram.py ├── gdmr_both_categorical_and_numerical.py ├── gdmr_plot.py ├── hdp_basic.py ├── hdp_visualization.py ├── hlda_basic.py ├── lda_basic.py ├── lda_visualization.py ├── raw_corpus_and_labeling.py └── word_prior.py ├── licenses_bundled ├── EigenRand └── MapboxVariant ├── requirements.txt ├── setup.py ├── src ├── Coherence │ ├── CoherenceModel.hpp │ ├── Common.h │ ├── ConfirmMeasurer.hpp │ ├── ProbEstimator.hpp │ └── Segmentor.hpp ├── Labeling │ ├── FoRelevance.cpp │ ├── FoRelevance.h │ ├── Labeler.h │ └── Phraser.hpp ├── TopicModel │ ├── CT.h │ ├── CTModel.cpp │ ├── CTModel.hpp │ ├── DMR.h │ ├── DMRModel.cpp │ ├── DMRModel.hpp │ ├── DT.h │ ├── DTM.h │ ├── DTModel.cpp │ ├── DTModel.hpp │ ├── GDMR.h │ ├── GDMRModel.cpp │ ├── GDMRModel.hpp │ ├── HDP.h │ ├── HDPModel.cpp │ ├── HDPModel.hpp │ ├── HLDA.h │ ├── HLDAModel.cpp │ ├── HLDAModel.hpp │ ├── HPA.h │ ├── HPAModel.cpp │ ├── HPAModel.hpp │ ├── LDA.h │ ├── LDACVB0Model.hpp │ ├── LDAModel.cpp │ ├── LDAModel.hpp │ ├── LLDA.h │ ├── LLDAModel.cpp │ ├── LLDAModel.hpp │ ├── MGLDA.h │ ├── MGLDAModel.cpp │ ├── MGLDAModel.hpp │ ├── PA.h │ ├── PAModel.cpp │ ├── PAModel.hpp │ ├── PLDA.h │ ├── PLDAModel.cpp │ ├── PLDAModel.hpp │ ├── PT.h │ ├── PTModel.cpp │ ├── PTModel.hpp │ ├── SLDA.h │ ├── SLDAModel.cpp │ ├── SLDAModel.hpp │ └── TopicModel.hpp ├── Utils │ ├── AliasMethod.hpp │ ├── Dictionary.cpp │ ├── Dictionary.h │ ├── EigenAddonOps.hpp │ ├── LBFGS.h │ ├── LBFGS │ │ ├── LineSearchBacktracking.h │ │ ├── LineSearchBracketing.h │ │ └── Param.h │ ├── LUT.hpp │ ├── Mmap.cpp │ ├── Mmap.h │ ├── MultiNormalDistribution.hpp │ ├── PolyaGamma.hpp │ ├── PolyaGammaHybrid.hpp │ ├── SharedString.cpp │ ├── SharedString.h │ ├── ThreadPool.hpp │ ├── Trie.hpp │ ├── TruncMultiNormal.hpp │ ├── Utils.hpp │ ├── avx_gamma.h │ ├── avx_mathfun.h │ ├── exception.h │ ├── math.h │ ├── neon_gamma.h │ ├── rtnorm.hpp │ ├── sample.hpp │ ├── serializer.cpp │ ├── serializer.hpp │ ├── slp.hpp │ ├── sse_gamma.h │ ├── sse_mathfun.h │ ├── text.hpp │ └── tvector.hpp └── python │ ├── dispatcher │ └── py_rt.cpp │ └── handler │ ├── PyUtils.h │ ├── coherence.h │ ├── docs.h │ ├── label.h │ ├── label_docs.h │ ├── module.h │ ├── py_CT.cpp │ ├── py_DMR.cpp │ ├── py_DT.cpp │ ├── py_GDMR.cpp │ ├── py_HDP.cpp │ ├── py_HLDA.cpp │ ├── py_HPA.cpp │ ├── py_LDA.cpp │ ├── py_LLDA.cpp │ ├── py_MGLDA.cpp │ ├── py_PA.cpp │ ├── py_PLDA.cpp │ ├── py_PT.cpp │ ├── py_SLDA.cpp │ ├── py_coherence.cpp │ ├── py_label.cpp │ ├── py_main.cpp │ ├── py_utils.cpp │ └── utils.h ├── test ├── sample.txt ├── sample_raw.txt ├── sample_tp.txt ├── sample_with_md.txt └── unit_test.py └── tomotopy ├── __init__.py ├── _call_utils.py ├── _show_progress.py ├── _summary.py ├── _version.py ├── auto_labeling_code.rst ├── auto_labeling_code_with_porter.rst ├── coherence.py ├── documentation.kr.rst ├── documentation.rst ├── label.py ├── utils.py └── viewer ├── __init__.py ├── __main__.py ├── template.html └── viewer_server.py /.github/FUNDING.yml: -------------------------------------------------------------------------------- 1 | # These are supported funding model platforms 2 | 3 | github: [bab2min] 4 | -------------------------------------------------------------------------------- /.github/workflows/deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bab2min/tomotopy/HEAD/.github/workflows/deploy.yml -------------------------------------------------------------------------------- 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