├── .travis.yml ├── DESCRIPTION ├── NAMESPACE ├── R ├── AAAClasses.R ├── adapt.R ├── aoa.R ├── arithm.R ├── background.R ├── bioclim.R ├── calibration.R ├── coordinates.R ├── density.R ├── dismo.R ├── ensemble.R ├── evaluates.R ├── features.R ├── getData.R ├── gui.R ├── impute.R ├── installAll.R ├── maxNet.R ├── maxent.R ├── maxlike.R ├── methods.R ├── modelFrame.R ├── modelInfo.R ├── names.R ├── niche.R ├── nicheSimilarity.R ├── pa.R ├── pca.R ├── plot.R ├── predict.R ├── replicate.R ├── responseCurve.R ├── roc.R ├── sdm.R ├── sdmData.R ├── sdmFormula.R ├── sdmMethods.R ├── sdmSetting.R ├── show.R ├── subset.R ├── threshold.R ├── utilities.R ├── varImp.R ├── write.R └── zzz.R ├── README.md ├── appveyor.yml ├── inst ├── CITATION ├── external │ ├── data.sdd │ ├── elevation.asc │ ├── model.sdm │ ├── multi_pa_df.csv │ ├── pa_df.csv │ ├── pa_df_with_xy.csv │ ├── pa_spatial_points.dbf │ ├── pa_spatial_points.shp │ ├── pa_spatial_points.shx │ ├── po_spatial_points.dbf │ ├── po_spatial_points.shp │ ├── po_spatial_points.shx │ ├── po_xy.shp │ ├── precipitation.asc │ ├── predictors.tif │ ├── sp1.cpg │ ├── sp1.dbf │ ├── sp1.prj │ ├── sp1.shp │ ├── sp1.shx │ ├── sp2.cpg │ ├── sp2.dbf │ ├── sp2.prj │ ├── sp2.shp │ ├── sp2.shx │ ├── species.dbf │ ├── species.prj │ ├── species.shp │ ├── species.shx │ ├── temperature.asc │ └── vegetation.asc ├── methods │ └── sdm │ │ ├── bioclim.R │ │ ├── bioclimDismo.R │ │ ├── brt.R │ │ ├── cart.R │ │ ├── domain.R │ │ ├── fda.R │ │ ├── gam.R │ │ ├── glm.R │ │ ├── glmnet.R │ │ ├── glmp.R │ │ ├── mahalDismo.R │ │ ├── mars.R │ │ ├── maxNet.R │ │ ├── maxent.R │ │ ├── maxlike.R │ │ ├── mda.R │ │ ├── mlp.R │ │ ├── ranger.R │ │ ├── rbf.R │ │ ├── rf.R │ │ ├── rpart.R │ │ └── svm.R ├── quick_sdm.Rmd ├── shinyApps │ ├── css.rds │ └── sdmgui │ │ ├── server.R │ │ ├── ui.R │ │ └── www │ │ ├── bootstrap.min.css │ │ └── sdm_design.png └── test │ ├── pca.R │ └── sdmgui.R ├── man ├── adapt.Rd ├── add.Rd ├── aoa.Rd ├── arithm.Rd ├── 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