├── .gitignore ├── .readthedocs.yaml ├── .travis.yml ├── LICENSE.md ├── Makefile ├── README.md ├── codemeta.json ├── docs ├── Makefile ├── api.rst ├── changelog.rst ├── conf.py ├── index.rst ├── install.rst ├── pyret-tutorial-figures │ ├── firing-rate.png │ ├── pred-vs-true-no-fit.png │ ├── pred-vs-true-rates.png │ ├── pred-vs-true-with-binterp-and-sigmoid.png │ ├── pred-vs-true-with-binterp.png │ └── recovered-sta.png ├── quickstart.rst ├── releases │ ├── v0.2.rst │ ├── v0.3.rst │ ├── v0.4.rst │ ├── v0.5.rst │ └── v0.6.rst ├── tutorial-data.h5 └── tutorial-data.npz ├── matplotlibrc ├── paper ├── paper.bib └── paper.md ├── pyret ├── __init__.py ├── filtertools.py ├── metadata.py ├── nonlinearities.py ├── spiketools.py ├── stimulustools.py ├── utils.py └── visualizations.py ├── requirements-dev.txt ├── requirements.txt ├── setup.cfg ├── setup.py └── tests ├── create_test_images.py ├── matplotlibrc ├── test-images └── baseline │ ├── ellipse.png │ ├── full-filter.png │ ├── plotcells.png │ ├── psth.png │ ├── raster-and-psth.png │ ├── raster.png │ ├── rates-movie-frame.png │ ├── spatial-filter.png │ ├── spatial-from-full-filter.png │ ├── sta-movie-frame.png │ ├── temporal-filter.png │ └── temporal-from-full-filter.png ├── test_filtertools.py ├── test_nonlinearities.py ├── test_spiketools.py ├── test_stimulustools.py ├── test_utils.py ├── test_visualizations.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/baccuslab/pyret/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/baccuslab/pyret/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- 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