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├── Cmakes │ ├── Findhtslib.cmake │ └── LibFindMacros.cmake ├── Makefile ├── argtable3.c ├── argtable3.h ├── cmake_install.cmake ├── defs.h ├── factorizeforGDR.c ├── finalstageforGDR.c ├── findReps.c ├── kmp.c ├── main.c ├── mainRepeats.c ├── mainsearchforGDR.c ├── mreps.c ├── printOutput.c ├── queue.h └── searchforHeadGDR.c ├── Dockerfile ├── LICENSE ├── Python ├── multiparse.py ├── outliers.py ├── screen.py ├── simulation.py └── visualise.py ├── README.md ├── docs ├── ACKNOWLEDGEMENTS.md ├── EXAMPLE.md ├── INSTALL.md ├── OUTLIERS.md ├── POSTPROC.md ├── PROCESSING.md ├── SCREENING.md ├── SIMULATION.md ├── VISUALISATION.md ├── example_vis.png └── info_score.png ├── environment.yml ├── examples ├── files │ ├── SRP168964_accessions.txt │ └── SRP168964_manifest_template.txt └── install_script.sh └── licenses ├── ARCH_LICENSE.md ├── ARGTABLE_LICENSE.md └── MREPS_LICENSE.md /C/CMakeFiles/3.15.5/CMakeCCompiler.cmake: 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