├── .gitignore ├── Day_1 ├── data │ ├── bad_habits_data.csv │ └── example_data_entry.xlsx ├── docs │ ├── 01_Lecture_Opening_Lines.pdf │ ├── 02_Lecture_Introduction_to_R.pdf │ ├── 03_Lecture_Projects.pdf │ ├── 04_Lecture_Spreadsheets_and_default_settings.pdf │ ├── Assignment_1.Rmd │ └── Assignment_styles.docx ├── example_project │ ├── README.md │ ├── data │ │ ├── 2019-06-28_clean_lettuce_data.csv │ │ ├── README.mdown │ │ ├── data_dictionary_AC.txt │ │ └── raw_data │ │ │ ├── example_data_entry.xlsx │ │ │ └── rawdata_flavonoids.csv │ ├── docs │ │ ├── 01_lab_presentation.html │ │ ├── 2019-08-01_end_of_project_session_info.txt │ │ └── lettuce_report.docx │ ├── example_project.Rproj │ ├── example_report.Rmd │ ├── example_report.docx │ ├── plots │ │ ├── 2019-06-17_final_plot.png │ │ ├── 2019-06-17_overview1_flavonoids.png │ │ ├── 2019-06-18_biomass_overview.png │ │ └── 2019-06-18_overview2_flavonoids.png │ ├── sample_lab_presentation.Rmd │ └── scripts │ │ ├── 01_data_clean.R │ │ ├── 02_exploratory_analysis.R │ │ └── 03_final_analysis.R └── scripts │ ├── 01_baseR_introduction.R │ ├── 02_navigating_R_packages.R │ ├── 03_practice_worksheet.R │ ├── 04_too_much_choice.R │ ├── 05_bad_habits.R │ ├── 06_good_habits.R │ ├── 07_practice_worksheet_solutions.R │ └── 08_basic_mathematical_operations.R ├── Day_2 ├── data │ ├── Day_2.Rdata │ ├── EconomistData.csv │ ├── clean_rna.RData │ ├── messy_data.csv │ ├── meta_tidy_house_reg.csv │ ├── nice_diamonds.csv │ ├── reprex.csv │ ├── rna_data.csv │ ├── rna_data.xlsx │ └── rna_data_dictionary.csv ├── docs │ ├── 01_Lecture_SOS.pdf │ ├── 02_Lecture_Tidyverse_code_intro.pdf │ ├── 03_Lecture_Data_transformation.pdf │ ├── 04_Lecture_Plotting.pdf │ ├── Assignment_2.Rmd │ ├── Assignment_styles.docx │ ├── Cheatsheet-syntax_comparison.pdf │ └── Cheatsheet-tidyverse_for_beginners.pdf ├── plots │ ├── 2019-12-13_basic_plot_meta.png │ ├── basic_plot_default.png │ ├── basic_plot_dpi.png │ ├── leu1_plot.pdf │ ├── leu1_plot.png │ └── my_last_plot_default.png └── scripts │ ├── 01_correct_the_errors.R │ ├── 02_rstudio_ide_tricks.R │ ├── 03_tibbles.R │ ├── 04_readr.R │ ├── 05_tidyr.R │ ├── 06_dplyr.R │ ├── 07_practice_transforming_data.R │ ├── 08_grapics example.R │ ├── 09_ggplot2.R │ ├── 10_practice_plots.R │ ├── 11_plotting_at_the_next_level.R │ ├── practice_plots_solutions.R │ └── practice_transforming_data_solutions.R ├── Day_3 ├── data │ ├── forbes.txt │ └── soil_data.csv ├── docs │ ├── 01_Lecture_function_and_loops.pdf │ ├── 02_Lecture_statistical_objects.pdf │ ├── 03_Lecture_putting_the_pieces_together.pdf │ ├── 04_Lecture_dmps_and_data_packaging.pdf │ ├── Assignment_3.Rmd │ ├── Assignment_styles.docx │ └── intro_to_RMarkdown.Rmd ├── fancy_R-markdown_bits.Rmd ├── fancy_R-markdown_bits.html └── scripts │ ├── 01_functions.R │ ├── 02_loops.R │ ├── 03_linear_models.R │ ├── 04_practice_worsheet.R │ ├── a_reproducible_example.R │ ├── first_reprex.R │ └── practice_worksheet_solutions.R ├── LICENSE ├── Pre-workshop ├── README.md ├── docs │ ├── R-RStudio_installation_steps.pdf │ └── R_update_presentation.pdf ├── plots │ └── successful_test.png ├── scripts │ └── test_script.R └── testing_testing.Rproj ├── R-A_Hitchhikers_Guide_to_Reproducible_Research.Rproj └── README.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/.gitignore -------------------------------------------------------------------------------- /Day_1/data/bad_habits_data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/data/bad_habits_data.csv -------------------------------------------------------------------------------- /Day_1/data/example_data_entry.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/data/example_data_entry.xlsx -------------------------------------------------------------------------------- /Day_1/docs/01_Lecture_Opening_Lines.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/docs/01_Lecture_Opening_Lines.pdf -------------------------------------------------------------------------------- /Day_1/docs/02_Lecture_Introduction_to_R.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/docs/02_Lecture_Introduction_to_R.pdf -------------------------------------------------------------------------------- /Day_1/docs/03_Lecture_Projects.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/docs/03_Lecture_Projects.pdf -------------------------------------------------------------------------------- /Day_1/docs/04_Lecture_Spreadsheets_and_default_settings.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/docs/04_Lecture_Spreadsheets_and_default_settings.pdf -------------------------------------------------------------------------------- /Day_1/docs/Assignment_1.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/docs/Assignment_1.Rmd -------------------------------------------------------------------------------- /Day_1/docs/Assignment_styles.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/docs/Assignment_styles.docx -------------------------------------------------------------------------------- /Day_1/example_project/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/README.md -------------------------------------------------------------------------------- /Day_1/example_project/data/2019-06-28_clean_lettuce_data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/data/2019-06-28_clean_lettuce_data.csv -------------------------------------------------------------------------------- /Day_1/example_project/data/README.mdown: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/data/README.mdown -------------------------------------------------------------------------------- /Day_1/example_project/data/data_dictionary_AC.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/data/data_dictionary_AC.txt -------------------------------------------------------------------------------- /Day_1/example_project/data/raw_data/example_data_entry.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/data/raw_data/example_data_entry.xlsx -------------------------------------------------------------------------------- /Day_1/example_project/data/raw_data/rawdata_flavonoids.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/data/raw_data/rawdata_flavonoids.csv -------------------------------------------------------------------------------- /Day_1/example_project/docs/01_lab_presentation.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/docs/01_lab_presentation.html -------------------------------------------------------------------------------- /Day_1/example_project/docs/2019-08-01_end_of_project_session_info.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/docs/2019-08-01_end_of_project_session_info.txt -------------------------------------------------------------------------------- /Day_1/example_project/docs/lettuce_report.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/docs/lettuce_report.docx -------------------------------------------------------------------------------- /Day_1/example_project/example_project.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/example_project.Rproj -------------------------------------------------------------------------------- /Day_1/example_project/example_report.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/example_report.Rmd -------------------------------------------------------------------------------- /Day_1/example_project/example_report.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/example_report.docx -------------------------------------------------------------------------------- /Day_1/example_project/plots/2019-06-17_final_plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/plots/2019-06-17_final_plot.png -------------------------------------------------------------------------------- /Day_1/example_project/plots/2019-06-17_overview1_flavonoids.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/plots/2019-06-17_overview1_flavonoids.png -------------------------------------------------------------------------------- /Day_1/example_project/plots/2019-06-18_biomass_overview.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/plots/2019-06-18_biomass_overview.png -------------------------------------------------------------------------------- /Day_1/example_project/plots/2019-06-18_overview2_flavonoids.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/plots/2019-06-18_overview2_flavonoids.png -------------------------------------------------------------------------------- /Day_1/example_project/sample_lab_presentation.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/sample_lab_presentation.Rmd -------------------------------------------------------------------------------- /Day_1/example_project/scripts/01_data_clean.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/scripts/01_data_clean.R -------------------------------------------------------------------------------- /Day_1/example_project/scripts/02_exploratory_analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/scripts/02_exploratory_analysis.R -------------------------------------------------------------------------------- /Day_1/example_project/scripts/03_final_analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/example_project/scripts/03_final_analysis.R -------------------------------------------------------------------------------- /Day_1/scripts/01_baseR_introduction.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/01_baseR_introduction.R -------------------------------------------------------------------------------- /Day_1/scripts/02_navigating_R_packages.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/02_navigating_R_packages.R -------------------------------------------------------------------------------- /Day_1/scripts/03_practice_worksheet.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/03_practice_worksheet.R -------------------------------------------------------------------------------- /Day_1/scripts/04_too_much_choice.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/04_too_much_choice.R -------------------------------------------------------------------------------- /Day_1/scripts/05_bad_habits.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/05_bad_habits.R -------------------------------------------------------------------------------- /Day_1/scripts/06_good_habits.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/06_good_habits.R -------------------------------------------------------------------------------- /Day_1/scripts/07_practice_worksheet_solutions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/07_practice_worksheet_solutions.R -------------------------------------------------------------------------------- /Day_1/scripts/08_basic_mathematical_operations.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_1/scripts/08_basic_mathematical_operations.R -------------------------------------------------------------------------------- /Day_2/data/Day_2.Rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/Day_2.Rdata -------------------------------------------------------------------------------- /Day_2/data/EconomistData.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/EconomistData.csv -------------------------------------------------------------------------------- /Day_2/data/clean_rna.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/clean_rna.RData -------------------------------------------------------------------------------- /Day_2/data/messy_data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/messy_data.csv -------------------------------------------------------------------------------- /Day_2/data/meta_tidy_house_reg.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/meta_tidy_house_reg.csv -------------------------------------------------------------------------------- /Day_2/data/nice_diamonds.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/nice_diamonds.csv -------------------------------------------------------------------------------- /Day_2/data/reprex.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/reprex.csv -------------------------------------------------------------------------------- /Day_2/data/rna_data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/rna_data.csv -------------------------------------------------------------------------------- /Day_2/data/rna_data.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/rna_data.xlsx -------------------------------------------------------------------------------- /Day_2/data/rna_data_dictionary.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/data/rna_data_dictionary.csv -------------------------------------------------------------------------------- /Day_2/docs/01_Lecture_SOS.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/01_Lecture_SOS.pdf -------------------------------------------------------------------------------- /Day_2/docs/02_Lecture_Tidyverse_code_intro.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/02_Lecture_Tidyverse_code_intro.pdf -------------------------------------------------------------------------------- /Day_2/docs/03_Lecture_Data_transformation.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/03_Lecture_Data_transformation.pdf -------------------------------------------------------------------------------- /Day_2/docs/04_Lecture_Plotting.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/04_Lecture_Plotting.pdf -------------------------------------------------------------------------------- /Day_2/docs/Assignment_2.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/Assignment_2.Rmd -------------------------------------------------------------------------------- /Day_2/docs/Assignment_styles.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/Assignment_styles.docx -------------------------------------------------------------------------------- /Day_2/docs/Cheatsheet-syntax_comparison.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/Cheatsheet-syntax_comparison.pdf -------------------------------------------------------------------------------- /Day_2/docs/Cheatsheet-tidyverse_for_beginners.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/docs/Cheatsheet-tidyverse_for_beginners.pdf -------------------------------------------------------------------------------- /Day_2/plots/2019-12-13_basic_plot_meta.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/plots/2019-12-13_basic_plot_meta.png -------------------------------------------------------------------------------- /Day_2/plots/basic_plot_default.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/plots/basic_plot_default.png -------------------------------------------------------------------------------- /Day_2/plots/basic_plot_dpi.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/plots/basic_plot_dpi.png -------------------------------------------------------------------------------- /Day_2/plots/leu1_plot.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/plots/leu1_plot.pdf -------------------------------------------------------------------------------- /Day_2/plots/leu1_plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/plots/leu1_plot.png -------------------------------------------------------------------------------- /Day_2/plots/my_last_plot_default.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/plots/my_last_plot_default.png -------------------------------------------------------------------------------- /Day_2/scripts/01_correct_the_errors.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/01_correct_the_errors.R -------------------------------------------------------------------------------- /Day_2/scripts/02_rstudio_ide_tricks.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/02_rstudio_ide_tricks.R -------------------------------------------------------------------------------- /Day_2/scripts/03_tibbles.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/03_tibbles.R -------------------------------------------------------------------------------- /Day_2/scripts/04_readr.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/04_readr.R -------------------------------------------------------------------------------- /Day_2/scripts/05_tidyr.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/05_tidyr.R -------------------------------------------------------------------------------- /Day_2/scripts/06_dplyr.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/06_dplyr.R -------------------------------------------------------------------------------- /Day_2/scripts/07_practice_transforming_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/07_practice_transforming_data.R -------------------------------------------------------------------------------- /Day_2/scripts/08_grapics example.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/08_grapics example.R -------------------------------------------------------------------------------- /Day_2/scripts/09_ggplot2.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/09_ggplot2.R -------------------------------------------------------------------------------- /Day_2/scripts/10_practice_plots.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/10_practice_plots.R -------------------------------------------------------------------------------- /Day_2/scripts/11_plotting_at_the_next_level.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/11_plotting_at_the_next_level.R -------------------------------------------------------------------------------- /Day_2/scripts/practice_plots_solutions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/practice_plots_solutions.R -------------------------------------------------------------------------------- /Day_2/scripts/practice_transforming_data_solutions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_2/scripts/practice_transforming_data_solutions.R -------------------------------------------------------------------------------- /Day_3/data/forbes.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/data/forbes.txt -------------------------------------------------------------------------------- /Day_3/data/soil_data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/data/soil_data.csv -------------------------------------------------------------------------------- /Day_3/docs/01_Lecture_function_and_loops.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/01_Lecture_function_and_loops.pdf -------------------------------------------------------------------------------- /Day_3/docs/02_Lecture_statistical_objects.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/02_Lecture_statistical_objects.pdf -------------------------------------------------------------------------------- /Day_3/docs/03_Lecture_putting_the_pieces_together.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/03_Lecture_putting_the_pieces_together.pdf -------------------------------------------------------------------------------- /Day_3/docs/04_Lecture_dmps_and_data_packaging.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/04_Lecture_dmps_and_data_packaging.pdf -------------------------------------------------------------------------------- /Day_3/docs/Assignment_3.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/Assignment_3.Rmd -------------------------------------------------------------------------------- /Day_3/docs/Assignment_styles.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/Assignment_styles.docx -------------------------------------------------------------------------------- /Day_3/docs/intro_to_RMarkdown.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/docs/intro_to_RMarkdown.Rmd -------------------------------------------------------------------------------- /Day_3/fancy_R-markdown_bits.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/fancy_R-markdown_bits.Rmd -------------------------------------------------------------------------------- /Day_3/fancy_R-markdown_bits.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/fancy_R-markdown_bits.html -------------------------------------------------------------------------------- /Day_3/scripts/01_functions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/01_functions.R -------------------------------------------------------------------------------- /Day_3/scripts/02_loops.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/02_loops.R -------------------------------------------------------------------------------- /Day_3/scripts/03_linear_models.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/03_linear_models.R -------------------------------------------------------------------------------- /Day_3/scripts/04_practice_worsheet.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/04_practice_worsheet.R -------------------------------------------------------------------------------- /Day_3/scripts/a_reproducible_example.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/a_reproducible_example.R -------------------------------------------------------------------------------- /Day_3/scripts/first_reprex.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/first_reprex.R -------------------------------------------------------------------------------- /Day_3/scripts/practice_worksheet_solutions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Day_3/scripts/practice_worksheet_solutions.R -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/LICENSE -------------------------------------------------------------------------------- /Pre-workshop/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Pre-workshop/README.md -------------------------------------------------------------------------------- /Pre-workshop/docs/R-RStudio_installation_steps.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Pre-workshop/docs/R-RStudio_installation_steps.pdf -------------------------------------------------------------------------------- /Pre-workshop/docs/R_update_presentation.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Pre-workshop/docs/R_update_presentation.pdf -------------------------------------------------------------------------------- /Pre-workshop/plots/successful_test.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Pre-workshop/plots/successful_test.png -------------------------------------------------------------------------------- /Pre-workshop/scripts/test_script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Pre-workshop/scripts/test_script.R -------------------------------------------------------------------------------- /Pre-workshop/testing_testing.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/Pre-workshop/testing_testing.Rproj -------------------------------------------------------------------------------- /R-A_Hitchhikers_Guide_to_Reproducible_Research.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/R-A_Hitchhikers_Guide_to_Reproducible_Research.Rproj -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bapalmer/R-A_Hitchhikers_Guide_to_Reproducible_Research/HEAD/README.md --------------------------------------------------------------------------------