├── .gitignore ├── Makefile ├── Makefile.defs ├── Makefile.defs.osx-macports ├── README.md ├── bin └── .gitkeep ├── cflags ├── cflags.guess ├── cflags.guess.osx-macports ├── doc └── kpp_UserManual.pdf ├── drv ├── exact.c ├── exact.f ├── general.c ├── general.f ├── general.f90 ├── general.m ├── general_adj.f90 ├── general_complete.f90 ├── general_ddm_ic.f ├── general_soa.f90 ├── general_stochastic.c ├── general_stochastic.f90 ├── general_tlm.f90 ├── main.c ├── main.f ├── none.c ├── none.f └── none.f90 ├── examples ├── cell.kpp ├── radau90.kpp ├── readme ├── rk.kpp ├── rktlm.kpp ├── ros.kpp ├── rosadj.kpp ├── rosenbrock90.kpp ├── rostlm.kpp ├── saprc2006.kpp ├── saprc_c.kpp ├── saprc_f77.kpp ├── saprc_f90.kpp ├── saprc_m.kpp ├── sd.kpp ├── sdadj.kpp ├── sdtlm.kpp ├── small_c.kpp ├── small_f77.kpp ├── small_f90.kpp └── small_m.kpp ├── gpl └── gpl.txt ├── int ├── atm_lsodes.def ├── atm_lsodes.f ├── atm_odessa_ddm.def ├── atm_odessa_ddm.f ├── atm_radau5.def ├── atm_radau5.f ├── gillespie.c ├── gillespie.def ├── gillespie.f90 ├── kpp_dvode.def ├── kpp_dvode.f ├── kpp_lsode.def ├── kpp_lsode.f90 ├── kpp_odessa_ddm.def ├── kpp_odessa_ddm.f ├── kpp_radau5.def ├── kpp_radau5.f90 ├── kpp_sdirk4.def ├── kpp_sdirk4.f ├── kpp_sdirk4.f90 ├── kpp_seulex.def ├── kpp_seulex.f ├── kpp_seulex.f90 ├── none.c ├── none.def ├── none.f ├── none.f90 ├── none.m ├── oldies │ ├── exqssa.c │ ├── exqssa.def │ ├── exqssa.f │ ├── kpp_rodas.def │ ├── kpp_rodas.f │ ├── kpp_ros4.def │ ├── kpp_ros4.f │ ├── qssa.def │ ├── qssa.f │ ├── qssa1.f │ ├── qssafix.def │ ├── qssafix.f │ ├── rodas3.c │ ├── rodas3.def │ ├── rodas3.f │ ├── rodas3_ddm.def │ ├── rodas3_ddm.f │ ├── ros1.def │ ├── ros1.f │ ├── ros1_ddm.def │ ├── ros1_ddm.f │ ├── ros2.c │ ├── ros2.def │ ├── ros2.f │ ├── ros2.f90 │ ├── ros2_cts_adj.f │ ├── ros2_ddm.def │ ├── ros2_ddm.f │ ├── ros3.c │ ├── ros3.def │ ├── ros3.f │ ├── ros3_ddm.def │ ├── ros3_ddm.f │ ├── ros4.def │ ├── ros4.f │ ├── ros4_ddm.def │ ├── ros4_ddm.f │ ├── twostepj.def │ └── twostepj.f ├── readme ├── rosenbrock.c ├── rosenbrock.def ├── rosenbrock.f ├── rosenbrock.f90 ├── rosenbrock_adj.def ├── rosenbrock_adj.f90 ├── rosenbrock_tlm.def ├── rosenbrock_tlm.f90 ├── runge_kutta.c ├── runge_kutta.def ├── runge_kutta.f90 ├── runge_kutta_adj.def ├── runge_kutta_adj.f90 ├── runge_kutta_tlm.def ├── runge_kutta_tlm.f90 ├── sdirk.c ├── sdirk.def ├── sdirk.f ├── sdirk.f90 ├── sdirk_adj.def ├── sdirk_adj.f90 ├── sdirk_tlm.def ├── sdirk_tlm.f90 ├── tau_leap.def ├── tau_leap.f90 └── user_contributed │ ├── readme │ ├── ros2_manual.def │ └── ros2_manual.f90 ├── models ├── CMAQ │ ├── GC_SPC.EXT │ ├── cmaq_s99.def │ ├── cmaq_s99.eqn │ ├── cmaq_s99.spc │ ├── mech.def │ ├── texas.def │ ├── texas.eqn │ ├── texas.spc │ └── texas.tar ├── MCM_additions.rxn ├── MCM_extract.def ├── MCM_extract.def.dead ├── MCM_extract.def.log ├── MCM_inorganic.rxn ├── MCM_inorganic.spc ├── MCM_organic.def ├── MCM_organic.def.log ├── RACM2.def ├── RACM2.eqn ├── RACM2.spc ├── RateFunctions.inc ├── atoms ├── cb05_sensitivity.eqn ├── cb05_sensitivity.spc ├── cb05cl_ae5_aq.eqn ├── cb05cl_ae5_aq.spc ├── cbm4.def ├── cbm4.def.log ├── cbm4.eqn ├── cbm4.spc ├── cell_cycle.def ├── cell_cycle_mRNA.def ├── cmaq.def ├── cmaq.def.org ├── cmaq_s99.def ├── cmaq_s99.eqn ├── cmaq_s99.spc ├── cmaq_s99old.def ├── cmaq_s99old.eqn ├── cmaq_s99old.spc ├── geos_chem.def ├── geos_chem.eqn ├── geos_chem.spc ├── geosacyl_chem.def ├── geosacyl_chem.eqn ├── geosacyl_chem.spc ├── geosg_chem.def ├── geosg_chem.eqn ├── geosg_chem.spc ├── mz4.def ├── mz4.eqn ├── mz4.spc ├── mz4Functions.inc ├── saprc07_ae5_aq.eqn ├── saprc07_ae5_aq.spc ├── saprc99.def ├── saprc99.eqn ├── saprc99.spc ├── saprc99_ae5_aq.eqn ├── saprc99_ae5_aq.spc ├── saprcnov.def ├── saprcnov.eqn ├── saprcnov.spc ├── small_strato.def ├── small_strato.eqn ├── small_strato.spc ├── smog.def ├── smog.eqn ├── smog.spc ├── stochastic_dimer.def ├── strato.def ├── strato.eqn ├── strato.spc ├── tropo.def ├── tropo.eqn ├── tropo.spc ├── wet.def ├── wet.eqn └── wet.spc ├── readme ├── readme.osx-macports ├── setcase ├── site-lisp └── kpp.el ├── src ├── Makefile ├── code.c ├── code.h ├── code_c.c ├── code_f77.c ├── code_f90.c ├── code_matlab.c ├── copyright ├── debug.c ├── gdata.h ├── gdef.h ├── gen.c ├── kpp.c ├── scan.h ├── scan.l ├── scan.y ├── scanner.c └── scanutil.c └── util ├── Makefile.c ├── Makefile.f ├── Makefile.f90 ├── Mex_Fun.c ├── Mex_Fun.f ├── Mex_Fun.f90 ├── Mex_Hessian.c ├── Mex_Hessian.f ├── Mex_Hessian.f90 ├── Mex_Jac_SP.c ├── Mex_Jac_SP.f ├── Mex_Jac_SP.f90 ├── Template_Fun_Chem.m ├── Template_Jac_Chem.m ├── UpdateSun.c ├── UpdateSun.f ├── UpdateSun.f90 ├── UpdateSun.m ├── UserRateLaws.c ├── UserRateLaws.f ├── UserRateLaws.f90 ├── UserRateLaws.m ├── UserRateLaws_FcnHeader.f ├── blas.c ├── blas.f ├── blas.f90 ├── dFun_dRcoeff.c ├── dFun_dRcoeff.f ├── dFun_dRcoeff.f90 ├── dFun_dRcoeff.m ├── dJac_dRcoeff.c ├── dJac_dRcoeff.f ├── dJac_dRcoeff.f90 ├── dJac_dRcoeff.m ├── mex.c ├── mex.f ├── ncar.c ├── ncar.h ├── 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