├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ └── test-coverage.yaml ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── create_APCsummary.R ├── create_modelSummary.R ├── data.R ├── plot_APCheatmap.R ├── plot_APChexamap.R ├── plot_APChexamap_helpers.R ├── plot_density.R ├── plot_densityMatrix.R ├── plot_density_helpers.R ├── plot_jointMarginalAPCeffects.R ├── plot_linearEffects.R ├── plot_partialAPCeffects.R ├── plot_smoothEffects.R ├── plot_variable.R └── small_helpers.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── appveyor.yml ├── codecov.yml ├── data-raw ├── Reiseanalyse_sample.rds ├── save_dataObjects.R └── usa_drugDeaths_1999_2019.txt ├── data ├── drug_deaths.rda └── travel.rda ├── man ├── calc_density.Rd ├── capitalize_firstLetter.Rd ├── compute_marginalAPCeffects.Rd ├── compute_xCoordinate.Rd ├── compute_yCoordinate.Rd ├── create_APCsummary.Rd ├── create_groupVariable.Rd ├── create_highlightDiagonalData.Rd ├── create_modelSummary.Rd ├── create_oneAPCsummaryTable.Rd ├── drug_deaths.Rd ├── ensure_segmentsInPlotRange.Rd ├── extract_summary_linearEffects.Rd ├── figures │ └── hex-sticker │ │ ├── _readme.txt │ │ ├── hex-sticker.svg │ │ └── individual_images │ │ ├── icon_gearWheel.svg │ │ ├── main_plot.R │ │ └── main_plot.pdf ├── get_plotGAMobject.Rd ├── gg_addReferenceLines.Rd ├── gg_highlightDiagonals.Rd ├── plot_1Dsmooth.Rd ├── plot_APCheatmap.Rd ├── plot_APChexamap.Rd ├── plot_density.Rd ├── plot_densityMatrix.Rd ├── plot_density_categorical.Rd ├── plot_density_metric.Rd ├── plot_jointMarginalAPCeffects.Rd ├── plot_linearEffects.Rd ├── plot_marginalAPCeffects.Rd ├── plot_partialAPCeffects.Rd ├── plot_variable.Rd └── travel.Rd ├── paper ├── figures │ ├── 1_densityMatrix.png │ ├── 2_modelEffects.png │ ├── 3_joinedHexamaps.png │ ├── 3_modelHexamap.png │ ├── 3_observedHexamap.png │ └── code_figures.R ├── paper.bib └── paper.md ├── tests ├── testthat.R └── testthat │ ├── test-modelSummaries.R │ ├── test-plots_APCeffects.R │ ├── test-plots_APCsurface.R │ ├── test-plots_covarEffects.R │ ├── test-plots_descriptive.R │ └── test-small_helpers.R └── vignettes ├── .gitignore └── main_functionality.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bauer-alex/APCtools/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bauer-alex/APCtools/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- 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