├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── IC.R ├── TMB.R ├── confint.R ├── dists.R ├── impsamp.R ├── mle.R ├── mle2-class.R ├── mle2-methods.R ├── predict.R ├── profile.R ├── slice.R └── update.R ├── README.md ├── TODO ├── inst ├── NEWS.Rd ├── doc │ ├── .build.timestamp │ ├── mle2.pdf │ └── quasi.pdf ├── tinytest │ └── test-basic.R └── vignetteData │ └── orob1.rda ├── man ├── BIC-methods.Rd ├── ICtab.Rd ├── as.data.frame.profile.mle2.Rd ├── call.to.char.Rd ├── dnorm_n.Rd ├── get.mnames.Rd ├── mle-class.Rd ├── mle2.Rd ├── mle2.options.Rd ├── namedrop.Rd ├── parnames.Rd ├── pop_pred_samp.Rd ├── predict-methods.Rd ├── profile-methods.Rd ├── profile.mle-class.Rd ├── relist.Rd ├── sbinom.Rd ├── slice.Rd ├── slice.mle-class.Rd ├── strwrapx.Rd └── summary.mle-class.Rd ├── tests ├── BIC.R ├── BIC.Rout.save ├── ICtab.R ├── ICtab.Rout.save ├── Makefile ├── RUnit-tests.R ├── binomtest1.R ├── binomtest1.Rout.save ├── boundstest.R ├── controleval.R ├── controleval.Rout.save ├── eval.R ├── eval.Rout.save ├── formulatest.R ├── formulatest.Rout.save ├── glmcomp.R ├── glmcomp.Rout.save ├── gradient_vecpar_profile.R ├── gradient_vecpar_profile.Rout.save ├── grtest1.R ├── grtest1.Rout.save ├── impsamp.R ├── makesavefiles ├── methods.R ├── methods.Rout.save ├── mkout ├── mortanal.R ├── mortanal.Rout.save ├── optimize.R ├── optimize.Rout.save ├── optimizers.R ├── optimizers.Rout.save ├── optimx.R ├── optimx.Rout.save ├── order.R ├── order.Rout.save ├── parscale.R ├── parscale.Rout.save ├── predict.R ├── predict.Rout.save ├── prof_newmin.R ├── prof_spec.R ├── profbound.R ├── profbound.Rout.save ├── richards.R ├── richards.Rout.save ├── startvals.R ├── startvals.Rout.save ├── startvals2.R ├── startvals2.Rout.save ├── test-relist1.R ├── test-relist1.Rout.save ├── testbounds.R ├── testbounds.Rout.save ├── testderiv.R ├── testderiv.Rout.save ├── testenv.R ├── testenv.Rout.save ├── testparpred.R ├── testparpred.Rout.save ├── 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