├── .github └── workflows │ └── stale.yml ├── .gitignore ├── .gitmodules ├── AUTHORS ├── LICENSE ├── README.md ├── azure-pipelines.yml ├── bin ├── goldrush ├── goldrush-ulimit └── meson.build ├── goldrush_path ├── Common │ ├── .deps │ │ └── libcommon_a-Options.Po │ ├── IOUtil.h │ ├── Makefile.am │ ├── Options.cpp │ └── Options.h ├── MIBFConstructSupport.hpp ├── MIBloomFilter.hpp ├── Options.cpp ├── Options.h ├── calc_phred_average.cpp ├── calc_phred_average.hpp ├── goldrush_path.cpp ├── meson.build ├── multiLensfrHashIterator.hpp ├── ntcard.hpp ├── opt.cpp ├── opt.hpp ├── read_hashing.cpp ├── read_hashing.hpp ├── spaced_seeds.cpp └── spaced_seeds.hpp ├── img ├── GR-Edit.png ├── GR-Link.png ├── GR-Path.png └── GoldRush-logo.png ├── meson.build ├── requirements.txt ├── scripts └── format └── tests └── goldrush_test_demo.sh /.github/workflows/stale.yml: -------------------------------------------------------------------------------- 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