├── .gitignore ├── CMS Credit ├── LICENSE.md ├── Paris_2013EMS_CMS.pdf ├── README.md ├── User-Guide-v2.pdf └── cms-master ├── arch ├── gfortran_compiler └── mpi_compiler ├── expt ├── README.md ├── expt_example │ └── example_output │ │ ├── traj_file_example.jpg │ │ └── traj_file_example.nc ├── input_example │ ├── buoyancy_example │ ├── ibm.list │ ├── nest_1.nml │ ├── poly_example.xyz │ ├── releaseFile │ ├── runconf.list │ ├── strata_example │ └── vert_matrix_example └── input_getdata_example │ └── nest_1.nml ├── postproc ├── draw_traj_ascii.m ├── draw_traj_netcdf.m ├── draw_velocities.m └── make_mtx.m └── src ├── Makefile ├── cms.f90 ├── dealloc.f90 ├── def_constants.f90 ├── def_globalvariables.f90 ├── def_nests.f90 ├── def_particle.f90 ├── findnest.f90 ├── fldinterp.f90 ├── getdata.f90 ├── getfilename.f90 ├── getnestinfo.f90 ├── getphysicaldata.f90 ├── input.f90 ├── lonlat2ij.f90 ├── loop.f90 ├── mod_buoyancy_larva.f90 ├── mod_calendar.f90 ├── mod_diffpart.f90 ├── mod_directory.c ├── 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