├── ARACNe-AP └── ARACNe-AP.sh ├── CellPhoneDB ├── CellPhoneDB.sh └── Results merge filter plot.R ├── DoubletFinder.R ├── MetaData ├── annotation.csv └── subcluster_anno.csv ├── Monocle2.8.R ├── Plot ├── Barplot.R ├── Pheatmap.R └── Vlnplot.R ├── README.md ├── Seurat ├── Seurat2.3.4 CCA.R └── Seurat2.3.4 subset.R ├── Survival and correlation analysis.R └── TCR filt condition and Startrac.R /ARACNe-AP/ARACNe-AP.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/ARACNe-AP/ARACNe-AP.sh -------------------------------------------------------------------------------- /CellPhoneDB/CellPhoneDB.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/CellPhoneDB/CellPhoneDB.sh -------------------------------------------------------------------------------- /CellPhoneDB/Results merge filter plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/CellPhoneDB/Results merge filter plot.R -------------------------------------------------------------------------------- /DoubletFinder.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/DoubletFinder.R -------------------------------------------------------------------------------- /MetaData/annotation.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/MetaData/annotation.csv -------------------------------------------------------------------------------- /MetaData/subcluster_anno.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/MetaData/subcluster_anno.csv -------------------------------------------------------------------------------- /Monocle2.8.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Monocle2.8.R -------------------------------------------------------------------------------- /Plot/Barplot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Plot/Barplot.R -------------------------------------------------------------------------------- /Plot/Pheatmap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Plot/Pheatmap.R -------------------------------------------------------------------------------- /Plot/Vlnplot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Plot/Vlnplot.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/README.md -------------------------------------------------------------------------------- /Seurat/Seurat2.3.4 CCA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Seurat/Seurat2.3.4 CCA.R -------------------------------------------------------------------------------- /Seurat/Seurat2.3.4 subset.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Seurat/Seurat2.3.4 subset.R -------------------------------------------------------------------------------- /Survival and correlation analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/Survival and correlation analysis.R -------------------------------------------------------------------------------- /TCR filt condition and Startrac.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/bei-lab/scRNA-of-NPC/HEAD/TCR filt condition and Startrac.R --------------------------------------------------------------------------------