├── .github └── workflows │ └── python-publish.yml ├── .gitignore ├── LICENSE ├── README.md ├── misc ├── Huang_et_al_Cosyne_abstract.pdf ├── Huang_et_al_Cosyne_poster.pdf └── showcase.png ├── pyproject.toml ├── requirements.txt ├── rfest ├── EvidenceOpt │ ├── __init__.py │ ├── _ald.py │ ├── _ard.py │ ├── _asd.py │ ├── _base.py │ ├── _fasd.py │ ├── _ridge.py │ └── _sard.py ├── GLM │ ├── __init__.py │ ├── _base.py │ ├── _glm.py │ ├── _lnln.py │ ├── _lnp.py │ ├── _splinelg.py │ ├── _splinelnln.py │ └── _splinelnp.py ├── MF │ ├── README.md │ ├── __init__.py │ ├── _initialize.py │ ├── _kmeans.py │ ├── _nmf.py │ └── _seminmf.py ├── __init__.py ├── check.py ├── generate_test_data.py ├── loss.py ├── metrics.py ├── nonlinearities.py ├── priors.py ├── simulate.py ├── splines.py ├── utils.py └── version.py ├── setup.cfg └── tests ├── test_ald.py ├── test_asd.py ├── test_glm.py ├── test_lnln.py ├── test_lnp.py ├── test_splinelg.py ├── test_splinelnln.py └── test_splinelnp.py /.github/workflows/python-publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/.github/workflows/python-publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/README.md -------------------------------------------------------------------------------- /misc/Huang_et_al_Cosyne_abstract.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/misc/Huang_et_al_Cosyne_abstract.pdf -------------------------------------------------------------------------------- /misc/Huang_et_al_Cosyne_poster.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/misc/Huang_et_al_Cosyne_poster.pdf -------------------------------------------------------------------------------- /misc/showcase.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/misc/showcase.png -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/requirements.txt -------------------------------------------------------------------------------- /rfest/EvidenceOpt/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/__init__.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_ald.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_ald.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_ard.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_ard.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_asd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_asd.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_base.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_fasd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_fasd.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_ridge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_ridge.py -------------------------------------------------------------------------------- /rfest/EvidenceOpt/_sard.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/EvidenceOpt/_sard.py -------------------------------------------------------------------------------- /rfest/GLM/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/__init__.py -------------------------------------------------------------------------------- /rfest/GLM/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_base.py -------------------------------------------------------------------------------- /rfest/GLM/_glm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_glm.py -------------------------------------------------------------------------------- /rfest/GLM/_lnln.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_lnln.py -------------------------------------------------------------------------------- /rfest/GLM/_lnp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_lnp.py -------------------------------------------------------------------------------- /rfest/GLM/_splinelg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_splinelg.py -------------------------------------------------------------------------------- /rfest/GLM/_splinelnln.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_splinelnln.py -------------------------------------------------------------------------------- /rfest/GLM/_splinelnp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/GLM/_splinelnp.py -------------------------------------------------------------------------------- /rfest/MF/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/MF/README.md -------------------------------------------------------------------------------- /rfest/MF/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/MF/__init__.py -------------------------------------------------------------------------------- /rfest/MF/_initialize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/MF/_initialize.py -------------------------------------------------------------------------------- /rfest/MF/_kmeans.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/MF/_kmeans.py -------------------------------------------------------------------------------- /rfest/MF/_nmf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/MF/_nmf.py -------------------------------------------------------------------------------- /rfest/MF/_seminmf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/MF/_seminmf.py -------------------------------------------------------------------------------- /rfest/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/__init__.py -------------------------------------------------------------------------------- /rfest/check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/check.py -------------------------------------------------------------------------------- /rfest/generate_test_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/generate_test_data.py -------------------------------------------------------------------------------- /rfest/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/loss.py -------------------------------------------------------------------------------- /rfest/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/metrics.py -------------------------------------------------------------------------------- /rfest/nonlinearities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/nonlinearities.py -------------------------------------------------------------------------------- /rfest/priors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/priors.py -------------------------------------------------------------------------------- /rfest/simulate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/simulate.py -------------------------------------------------------------------------------- /rfest/splines.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/splines.py -------------------------------------------------------------------------------- /rfest/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/rfest/utils.py -------------------------------------------------------------------------------- /rfest/version.py: -------------------------------------------------------------------------------- 1 | __version__ = '2.1.2' 2 | -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/setup.cfg -------------------------------------------------------------------------------- /tests/test_ald.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_ald.py -------------------------------------------------------------------------------- /tests/test_asd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_asd.py -------------------------------------------------------------------------------- /tests/test_glm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_glm.py -------------------------------------------------------------------------------- /tests/test_lnln.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_lnln.py -------------------------------------------------------------------------------- /tests/test_lnp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_lnp.py -------------------------------------------------------------------------------- /tests/test_splinelg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_splinelg.py -------------------------------------------------------------------------------- /tests/test_splinelnln.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_splinelnln.py -------------------------------------------------------------------------------- /tests/test_splinelnp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berenslab/RFEst/HEAD/tests/test_splinelnp.py --------------------------------------------------------------------------------