├── .gitignore ├── ExampleData └── .gitkeep ├── ExampleFunctionCalls ├── example_Classification_crossValidateMulti.m ├── example_Classification_crossValidateMulti_opt.m ├── example_Classification_crossValidatePairs.m ├── example_Classification_crossValidatePairs_opt.m ├── example_Classification_predict.m ├── example_Classification_trainMulti.m ├── example_Classification_trainMulti_opt.m ├── example_Classification_trainPairs.m ├── example_Classification_trainPairs_opt.m ├── example_Preprocessing_averageTrials.m ├── example_Preprocessing_noiseNormalization.m ├── example_Preprocessing_shuffleData.m ├── example_RDM_Computation_computeCMRDM.m ├── example_RDM_Computation_computeEuclideanRDM.m ├── example_RDM_Computation_computePearsonRDM.m ├── example_RDM_Computation_shiftPairwiseAccuracy.m ├── example_Reliability_computeSampleSizeReliability.m ├── example_Reliability_computeSpaceTimeReliability.m ├── example_Visualization_plotDendrogram.m ├── example_Visualization_plotMDS.m ├── example_Visualization_plotMST.m └── example_Visualization_plotMatrix.m ├── IllustrativeAnalyses ├── illustrative_0_downloadExampleData.m ├── illustrative_1_impactOfPreprocessing.m ├── illustrative_2_singleChannelAnalyses.m ├── illustrative_3_timeResolvedAnalyses.m ├── illustrative_4_trainTestOptimizeSVM.m ├── illustrative_5_compareRDMs.m └── illustrative_6_figureCustomizations.m ├── LICENSE.md ├── MatClassRSA v2 User Manual.pdf ├── README.md └── src ├── +Classification ├── crossValidateMulti.m ├── crossValidateMulti_opt.m ├── crossValidatePairs.m ├── crossValidatePairs_opt.m ├── predict.m ├── trainMulti.m ├── trainMulti_opt.m ├── trainPairs.m └── trainPairs_opt.m ├── +Preprocessing ├── averageTrials.m ├── noiseNormalization.m └── shuffleData.m ├── +RDM_Computation ├── computeCMRDM.m ├── computeEuclideanRDM.m ├── computePearsonRDM.m └── shiftPairwiseAccuracyRDM.m ├── +Reliability ├── computeSampleSizeReliability.m └── computeSpaceTimeReliability.m ├── +Utils ├── SVMhandleties.m ├── centerAndScaleData.m ├── checkInputDataShape.m ├── classTuple2Nchoose2Ind.m ├── colors.mat ├── computeAccuracy.m ├── computeReliability.m ├── convert2double.m ├── convertSimToDist.m ├── cov1para.m ├── cube2trRows.m ├── cvData.m ├── decValues2PairwiseAcc.m ├── fitModel.m ├── getNChoose2Ind.m ├── getPCs.m ├── getTickCoord.m ├── initInputParser.m ├── initPairwiseCellMat.m ├── is2Dor3DMatrix.m ├── locsEGI124.mat ├── modelPredict.m ├── nestedCvGridSearch.m ├── normalizeMatrix.m ├── permTestPVal.m ├── permuteTrainDevData.m ├── processRDM.m ├── processTrainDevTestSplit.m ├── rankDistances.m ├── scaleDataInRange.m ├── scaleDataShiftDivide.m ├── setUserSpecifiedRng.m ├── subsetTrainTestMatrices.m ├── symmetrizeMatrix.m ├── topoplotStandalone.m ├── trRows2cube.m ├── trainDevGridSearch.m ├── trainDevTestPart.m └── verifySVMParameters.m ├── +Visualization ├── plotDendrogram.m ├── plotMDS.m ├── plotMST.m └── plotMatrix.m └── libsvm-3.24 ├── COPYRIGHT ├── FAQ.html ├── Makefile ├── Makefile.win ├── README ├── heart_scale ├── java ├── Makefile ├── libsvm.jar ├── libsvm │ ├── svm.java │ ├── svm.m4 │ ├── svm_model.java │ ├── svm_node.java │ ├── svm_parameter.java │ ├── svm_print_interface.java │ └── svm_problem.java ├── svm_predict.java ├── svm_scale.java ├── svm_toy.java ├── svm_train.java └── test_applet.html ├── matlab ├── Makefile ├── README ├── libsvmread.c ├── libsvmwrite.c ├── make.m ├── svm_model_matlab.c ├── svm_model_matlab.h ├── svmpredict.c └── svmtrain.c ├── python ├── Makefile ├── README ├── commonutil.py ├── svm.py └── svmutil.py ├── svm-predict.c ├── svm-scale.c ├── svm-toy ├── qt │ ├── Makefile │ └── svm-toy.cpp └── windows │ └── svm-toy.cpp ├── svm-train.c ├── svm.cpp ├── svm.def ├── svm.h ├── tools ├── README ├── checkdata.py ├── easy.py ├── grid.py └── subset.py └── windows ├── libsvm.dll ├── libsvmread.mexw64 ├── libsvmwrite.mexw64 ├── svm-predict.exe ├── svm-scale.exe ├── svm-toy.exe ├── svm-train.exe ├── svmpredict.mexw64 └── svmtrain.mexw64 /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/.gitignore -------------------------------------------------------------------------------- /ExampleData/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_crossValidateMulti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_crossValidateMulti.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_crossValidateMulti_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_crossValidateMulti_opt.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_crossValidatePairs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_crossValidatePairs.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_crossValidatePairs_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_crossValidatePairs_opt.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_predict.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_predict.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_trainMulti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_trainMulti.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_trainMulti_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_trainMulti_opt.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_trainPairs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_trainPairs.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Classification_trainPairs_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Classification_trainPairs_opt.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Preprocessing_averageTrials.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Preprocessing_averageTrials.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Preprocessing_noiseNormalization.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Preprocessing_noiseNormalization.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Preprocessing_shuffleData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Preprocessing_shuffleData.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_RDM_Computation_computeCMRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_RDM_Computation_computeCMRDM.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_RDM_Computation_computeEuclideanRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_RDM_Computation_computeEuclideanRDM.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_RDM_Computation_computePearsonRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_RDM_Computation_computePearsonRDM.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_RDM_Computation_shiftPairwiseAccuracy.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_RDM_Computation_shiftPairwiseAccuracy.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Reliability_computeSampleSizeReliability.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Reliability_computeSampleSizeReliability.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Reliability_computeSpaceTimeReliability.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Reliability_computeSpaceTimeReliability.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Visualization_plotDendrogram.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Visualization_plotDendrogram.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Visualization_plotMDS.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Visualization_plotMDS.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Visualization_plotMST.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Visualization_plotMST.m -------------------------------------------------------------------------------- /ExampleFunctionCalls/example_Visualization_plotMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/ExampleFunctionCalls/example_Visualization_plotMatrix.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_0_downloadExampleData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_0_downloadExampleData.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_1_impactOfPreprocessing.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_1_impactOfPreprocessing.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_2_singleChannelAnalyses.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_2_singleChannelAnalyses.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_3_timeResolvedAnalyses.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_3_timeResolvedAnalyses.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_4_trainTestOptimizeSVM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_4_trainTestOptimizeSVM.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_5_compareRDMs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_5_compareRDMs.m -------------------------------------------------------------------------------- /IllustrativeAnalyses/illustrative_6_figureCustomizations.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/IllustrativeAnalyses/illustrative_6_figureCustomizations.m -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/LICENSE.md -------------------------------------------------------------------------------- /MatClassRSA v2 User Manual.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/MatClassRSA v2 User Manual.pdf -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/README.md -------------------------------------------------------------------------------- /src/+Classification/crossValidateMulti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/crossValidateMulti.m -------------------------------------------------------------------------------- /src/+Classification/crossValidateMulti_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/crossValidateMulti_opt.m -------------------------------------------------------------------------------- /src/+Classification/crossValidatePairs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/crossValidatePairs.m -------------------------------------------------------------------------------- /src/+Classification/crossValidatePairs_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/crossValidatePairs_opt.m -------------------------------------------------------------------------------- /src/+Classification/predict.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/predict.m -------------------------------------------------------------------------------- /src/+Classification/trainMulti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/trainMulti.m -------------------------------------------------------------------------------- /src/+Classification/trainMulti_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/trainMulti_opt.m -------------------------------------------------------------------------------- /src/+Classification/trainPairs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/trainPairs.m -------------------------------------------------------------------------------- /src/+Classification/trainPairs_opt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Classification/trainPairs_opt.m -------------------------------------------------------------------------------- /src/+Preprocessing/averageTrials.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Preprocessing/averageTrials.m -------------------------------------------------------------------------------- /src/+Preprocessing/noiseNormalization.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Preprocessing/noiseNormalization.m -------------------------------------------------------------------------------- /src/+Preprocessing/shuffleData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Preprocessing/shuffleData.m -------------------------------------------------------------------------------- /src/+RDM_Computation/computeCMRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+RDM_Computation/computeCMRDM.m -------------------------------------------------------------------------------- /src/+RDM_Computation/computeEuclideanRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+RDM_Computation/computeEuclideanRDM.m -------------------------------------------------------------------------------- /src/+RDM_Computation/computePearsonRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+RDM_Computation/computePearsonRDM.m -------------------------------------------------------------------------------- /src/+RDM_Computation/shiftPairwiseAccuracyRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+RDM_Computation/shiftPairwiseAccuracyRDM.m -------------------------------------------------------------------------------- /src/+Reliability/computeSampleSizeReliability.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Reliability/computeSampleSizeReliability.m -------------------------------------------------------------------------------- /src/+Reliability/computeSpaceTimeReliability.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Reliability/computeSpaceTimeReliability.m -------------------------------------------------------------------------------- /src/+Utils/SVMhandleties.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/SVMhandleties.m -------------------------------------------------------------------------------- /src/+Utils/centerAndScaleData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/centerAndScaleData.m -------------------------------------------------------------------------------- /src/+Utils/checkInputDataShape.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/checkInputDataShape.m -------------------------------------------------------------------------------- /src/+Utils/classTuple2Nchoose2Ind.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/classTuple2Nchoose2Ind.m -------------------------------------------------------------------------------- /src/+Utils/colors.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/colors.mat -------------------------------------------------------------------------------- /src/+Utils/computeAccuracy.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/computeAccuracy.m -------------------------------------------------------------------------------- /src/+Utils/computeReliability.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/computeReliability.m -------------------------------------------------------------------------------- /src/+Utils/convert2double.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/convert2double.m -------------------------------------------------------------------------------- /src/+Utils/convertSimToDist.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/convertSimToDist.m -------------------------------------------------------------------------------- /src/+Utils/cov1para.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/cov1para.m -------------------------------------------------------------------------------- /src/+Utils/cube2trRows.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/cube2trRows.m -------------------------------------------------------------------------------- /src/+Utils/cvData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/cvData.m -------------------------------------------------------------------------------- /src/+Utils/decValues2PairwiseAcc.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/decValues2PairwiseAcc.m -------------------------------------------------------------------------------- /src/+Utils/fitModel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/fitModel.m -------------------------------------------------------------------------------- /src/+Utils/getNChoose2Ind.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/getNChoose2Ind.m -------------------------------------------------------------------------------- /src/+Utils/getPCs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/getPCs.m -------------------------------------------------------------------------------- /src/+Utils/getTickCoord.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/getTickCoord.m -------------------------------------------------------------------------------- /src/+Utils/initInputParser.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/initInputParser.m -------------------------------------------------------------------------------- /src/+Utils/initPairwiseCellMat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/initPairwiseCellMat.m -------------------------------------------------------------------------------- /src/+Utils/is2Dor3DMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/is2Dor3DMatrix.m -------------------------------------------------------------------------------- /src/+Utils/locsEGI124.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/locsEGI124.mat -------------------------------------------------------------------------------- /src/+Utils/modelPredict.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/modelPredict.m -------------------------------------------------------------------------------- /src/+Utils/nestedCvGridSearch.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/nestedCvGridSearch.m -------------------------------------------------------------------------------- /src/+Utils/normalizeMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/normalizeMatrix.m -------------------------------------------------------------------------------- /src/+Utils/permTestPVal.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/permTestPVal.m -------------------------------------------------------------------------------- /src/+Utils/permuteTrainDevData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/permuteTrainDevData.m -------------------------------------------------------------------------------- /src/+Utils/processRDM.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/processRDM.m -------------------------------------------------------------------------------- /src/+Utils/processTrainDevTestSplit.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/processTrainDevTestSplit.m -------------------------------------------------------------------------------- /src/+Utils/rankDistances.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/rankDistances.m -------------------------------------------------------------------------------- /src/+Utils/scaleDataInRange.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/scaleDataInRange.m -------------------------------------------------------------------------------- /src/+Utils/scaleDataShiftDivide.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/scaleDataShiftDivide.m -------------------------------------------------------------------------------- /src/+Utils/setUserSpecifiedRng.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/setUserSpecifiedRng.m -------------------------------------------------------------------------------- /src/+Utils/subsetTrainTestMatrices.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/subsetTrainTestMatrices.m -------------------------------------------------------------------------------- /src/+Utils/symmetrizeMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/symmetrizeMatrix.m -------------------------------------------------------------------------------- /src/+Utils/topoplotStandalone.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/topoplotStandalone.m -------------------------------------------------------------------------------- /src/+Utils/trRows2cube.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/trRows2cube.m -------------------------------------------------------------------------------- /src/+Utils/trainDevGridSearch.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/trainDevGridSearch.m -------------------------------------------------------------------------------- /src/+Utils/trainDevTestPart.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/trainDevTestPart.m -------------------------------------------------------------------------------- /src/+Utils/verifySVMParameters.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Utils/verifySVMParameters.m -------------------------------------------------------------------------------- /src/+Visualization/plotDendrogram.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Visualization/plotDendrogram.m -------------------------------------------------------------------------------- /src/+Visualization/plotMDS.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Visualization/plotMDS.m -------------------------------------------------------------------------------- /src/+Visualization/plotMST.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Visualization/plotMST.m -------------------------------------------------------------------------------- /src/+Visualization/plotMatrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/+Visualization/plotMatrix.m -------------------------------------------------------------------------------- /src/libsvm-3.24/COPYRIGHT: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/COPYRIGHT -------------------------------------------------------------------------------- /src/libsvm-3.24/FAQ.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/FAQ.html -------------------------------------------------------------------------------- /src/libsvm-3.24/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/Makefile -------------------------------------------------------------------------------- /src/libsvm-3.24/Makefile.win: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/Makefile.win -------------------------------------------------------------------------------- /src/libsvm-3.24/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/README -------------------------------------------------------------------------------- /src/libsvm-3.24/heart_scale: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/heart_scale -------------------------------------------------------------------------------- /src/libsvm-3.24/java/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/Makefile -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm.jar: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm.jar -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm.m4: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm.m4 -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm_model.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm_model.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm_node.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm_node.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm_parameter.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm_parameter.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm_print_interface.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm_print_interface.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/libsvm/svm_problem.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/libsvm/svm_problem.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/svm_predict.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/svm_predict.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/svm_scale.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/svm_scale.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/svm_toy.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/svm_toy.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/svm_train.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/svm_train.java -------------------------------------------------------------------------------- /src/libsvm-3.24/java/test_applet.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/java/test_applet.html -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/Makefile -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/README -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/libsvmread.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/libsvmread.c -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/libsvmwrite.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/libsvmwrite.c -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/make.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/make.m -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/svm_model_matlab.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/svm_model_matlab.c -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/svm_model_matlab.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/svm_model_matlab.h -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/svmpredict.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/svmpredict.c -------------------------------------------------------------------------------- /src/libsvm-3.24/matlab/svmtrain.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/matlab/svmtrain.c -------------------------------------------------------------------------------- /src/libsvm-3.24/python/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/python/Makefile -------------------------------------------------------------------------------- /src/libsvm-3.24/python/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/python/README -------------------------------------------------------------------------------- /src/libsvm-3.24/python/commonutil.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/python/commonutil.py -------------------------------------------------------------------------------- /src/libsvm-3.24/python/svm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/python/svm.py -------------------------------------------------------------------------------- /src/libsvm-3.24/python/svmutil.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/python/svmutil.py -------------------------------------------------------------------------------- /src/libsvm-3.24/svm-predict.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm-predict.c -------------------------------------------------------------------------------- /src/libsvm-3.24/svm-scale.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm-scale.c -------------------------------------------------------------------------------- /src/libsvm-3.24/svm-toy/qt/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm-toy/qt/Makefile -------------------------------------------------------------------------------- /src/libsvm-3.24/svm-toy/qt/svm-toy.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm-toy/qt/svm-toy.cpp -------------------------------------------------------------------------------- /src/libsvm-3.24/svm-toy/windows/svm-toy.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm-toy/windows/svm-toy.cpp -------------------------------------------------------------------------------- /src/libsvm-3.24/svm-train.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm-train.c -------------------------------------------------------------------------------- /src/libsvm-3.24/svm.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm.cpp -------------------------------------------------------------------------------- /src/libsvm-3.24/svm.def: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm.def -------------------------------------------------------------------------------- /src/libsvm-3.24/svm.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/svm.h -------------------------------------------------------------------------------- /src/libsvm-3.24/tools/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/tools/README -------------------------------------------------------------------------------- /src/libsvm-3.24/tools/checkdata.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/tools/checkdata.py -------------------------------------------------------------------------------- /src/libsvm-3.24/tools/easy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/tools/easy.py -------------------------------------------------------------------------------- /src/libsvm-3.24/tools/grid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/tools/grid.py -------------------------------------------------------------------------------- /src/libsvm-3.24/tools/subset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/tools/subset.py -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/libsvm.dll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/libsvm.dll -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/libsvmread.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/libsvmread.mexw64 -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/libsvmwrite.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/libsvmwrite.mexw64 -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/svm-predict.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/svm-predict.exe -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/svm-scale.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/svm-scale.exe -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/svm-toy.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/svm-toy.exe -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/svm-train.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/svm-train.exe -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/svmpredict.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/svmpredict.mexw64 -------------------------------------------------------------------------------- /src/libsvm-3.24/windows/svmtrain.mexw64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/berneezy3/MatClassRSA/HEAD/src/libsvm-3.24/windows/svmtrain.mexw64 --------------------------------------------------------------------------------