├── .Rbuildignore ├── .devcontainer ├── .dockerignore ├── Dockerfile └── devcontainer.json ├── .github ├── .gitignore ├── dependabot.yml └── workflows │ ├── R-CMD-check.yaml │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── AllClasses.R ├── SpaNorm.R ├── checkers.R ├── fastSizeFactors.R ├── filterGenes.r ├── fitSpaNormNB.R ├── mainSpaNorm.R ├── mainSpaNormPCA.R ├── mainSpaNormSVG.R ├── plotCovariates.R └── plotSpatial.R ├── README.md ├── _pkgdown.yml ├── data └── HumanDLPFC.rda ├── inst ├── CITATION └── REFERENCES.bib ├── man ├── HumanDLPFC.Rd ├── SpaNorm.Rd ├── SpaNormFit.Rd ├── SpaNormPCA.Rd ├── SpaNormSVG.Rd ├── fastSizeFactors.Rd ├── filterGenes.Rd ├── getSVGResults.Rd ├── plotCovariate.Rd ├── plotSpatial.Rd └── topSVGs.Rd ├── tests ├── testthat.R └── testthat │ ├── test-SpaNormFit.R │ ├── test-checkBatch.R │ ├── test-fastSizeFactors.R │ ├── test-filterGenes.R │ ├── test-fitSpaNormNB.R │ ├── test-mainSpaNorm.R │ └── 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